jgi.p|Nanoce1779_2|337195, mRNA_2721 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|337195
Unique NamemRNA_2721
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1226
Alignment locationscaffold_5:1026503..1027728 -

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Properties
Property NameValue
TranscriptId337281
TrackFilteredModels2
ProteinId337195
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1026503..1027728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|337195gene_2721Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|337195mRNA_2721-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2721CDS_2721Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2721 ID=mRNA_2721|Name=jgi.p|Nanoce1779_2|337195|organism=Nannochloropsis oceanica|type=mRNA|length=1226bp
CTTGCCACCCGCCCCTCCATCCTTCTATACCAAGCCGAGGAATACATAGC
ACTTATTTTTGTTCCCATCCAAACTTTTGTCTCACTCTTTCCAACACCGT
ATGTAGATAGGCAAGTCCTTCGCGCTTGAAGCGCCACTTGGTGAAACAAT
ACCTGGCTTGCGCCGTTGGTGGCCCATCTTCGAAAAAGCATGCCGCCTGC
GATTACAACCAGCACCTCTCCAATGACCACCGCCACTCCAGCGACCAGCA
CCACCGCCACTTTGCTATCCAATCTCACTCCTCAGGTGTGGGGAAACTTG
GTGGTGGAGGCAGACCTGCATTTATCCTTGTTAAACCACGAGGGGCGGCT
GCTGCGGGACATCTACAAAAAAGTGGACTCCTCCGAGGAGGCCATAGCTA
AGGCTTTTGATATCCTTGACCGCCAAGGGATGGGCTGCTTGGACTTTGAC
CAGTTTGTTGAAGGATTGAATCGGTGCCTTTATGCCTTCGGTGGCACCGC
CCTCCCAAAGAATTTATCTTCCCTCGAAACCCTGTGGGCAGAGGCGTCGA
CCGGATCCCAGGAGCTCACGCGCCGCGTCTCCCGGGAAGCATTTGGCCTC
GTCCTTAGGAGATTGAAGATGGAAATACTATTATCTATGATTCAAGACGC
GTTTGACCCAGTTACCTCTCGCAGTACTGTCGCACCTGGAGGGTATGGTG
CCATTAACGGCGATATCGGCGCTAACAACACTGATAAATTGCGGCAACTG
AACATGTCCAAGCTGGACCGGGCGGACAAGGACATGATGCTAAAGGTGTT
TAATTTTACTAAACGCTCCATGTACAAGTGGGACGTGTCGGAGGATCGAC
AAAGAGATTTTTTTTTGACGAATCGCACTTCCGACATAATTTTGAAGTGG
ATCATGGTAAGCGCTTTGACAATCTGGGAAGTACCACAGTCATTTCGTAA
AATGCACAGGGTGTCCAAGTATCCTGGGTTGATATGCAGCGTACCACTTC
TTCCTGCCGCACTTTCTATGTTTTCTTCAGACCGCCGTCTTCAATAGCTC
CTCCCTCTCTAAGCTGCTTGCTCACGTACTCTTGATCACTTCTCTCACCT
TCTTTCGACGCATTCTCCCACCCATCCACTCAAACTTCCCTGTCCCTGCT
TCCCTTAATCAGGTCGAATGCCACGACTATACAAATATTTTCCGACTCGC
CGTCAAATACTGCATCCACAACCTTC
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protein sequence of jgi.p|Nanoce1779_2|337195

>mRNA_2721-protein ID=mRNA_2721-protein|Name=jgi.p|Nanoce1779_2|337195|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MPPAITTSTSPMTTATPATSTTATLLSNLTPQVWGNLVVEADLHLSLLNH
EGRLLRDIYKKVDSSEEAIAKAFDILDRQGMGCLDFDQFVEGLNRCLYAF
GGTALPKNLSSLETLWAEASTGSQELTRRVSREAFGLVLRRLKMEILLSM
IQDAFDPVTSRSTVAPGGYGAINGDIGANNTDKLRQLNMSKLDRADKDMM
LKVFNFTKRSMYKWDVSEDRQRDFFLTNRTSDIILKWIMVSALTIWEVPQ
SFRKMHRVSKYPGLICSVPLLPAALSMFSSDRRLQ*
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mRNA from alignment at scaffold_5:1026503..1027728-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2721 ID=mRNA_2721|Name=jgi.p|Nanoce1779_2|337195|organism=Nannochloropsis oceanica|type=mRNA|length=1226bp|location=Sequence derived from alignment at scaffold_5:1026503..1027728- (Nannochloropsis oceanica)
CTTGCCACCCGCCCCTCCATCCTTCTATACCAAGCCGAGGAATACATAGC
ACTTATTTTTGTTCCCATCCAAACTTTTGTCTCACTCTTTCCAACACCGT
ATGTAGATAGGCAAGTCCTTCGCGCTTGAAGCGCCACTTGGTGAAACAAT
ACCTGGCTTGCGCCGTTGGTGGCCCATCTTCGAAAAAGCATGCCGCCTGC
GATTACAACCAGCACCTCTCCAATGACCACCGCCACTCCAGCGACCAGCA
CCACCGCCACTTTGCTATCCAATCTCACTCCTCAGGTGTGGGGAAACTTG
GTGGTGGAGGCAGACCTGCATTTATCCTTGTTAAACCACGAGGGGCGGCT
GCTGCGGGACATCTACAAAAAAGTGGACTCCTCCGAGGAGGCCATAGCTA
AGGCTTTTGATATCCTTGACCGCCAAGGGATGGGCTGCTTGGACTTTGAC
CAGTTTGTTGAAGGATTGAATCGGTGCCTTTATGCCTTCGGTGGCACCGC
CCTCCCAAAGAATTTATCTTCCCTCGAAACCCTGTGGGCAGAGGCGTCGA
CCGGATCCCAGGAGCTCACGCGCCGCGTCTCCCGGGAAGCATTTGGCCTC
GTCCTTAGGAGATTGAAGATGGAAATACTATTATCTATGATTCAAGACGC
GTTTGACCCAGTTACCTCTCGCAGTACTGTCGCACCTGGAGGGTATGGTG
CCATTAACGGCGATATCGGCGCTAACAACACTGATAAATTGCGGCAACTG
AACATGTCCAAGCTGGACCGGGCGGACAAGGACATGATGCTAAAGGTGTT
TAATTTTACTAAACGCTCCATGTACAAGTGGGACGTGTCGGAGGATCGAC
AAAGAGATTTTTTTTTGACGAATCGCACTTCCGACATAATTTTGAAGTGG
ATCATGGTAAGCGCTTTGACAATCTGGGAAGTACCACAGTCATTTCGTAA
AATGCACAGGGTGTCCAAGTATCCTGGGTTGATATGCAGCGTACCACTTC
TTCCTGCCGCACTTTCTATGTTTTCTTCAGACCGCCGTCTTCAATAGCTC
CTCCCTCTCTAAGCTGCTTGCTCACGTACTCTTGATCACTTCTCTCACCT
TCTTTCGACGCATTCTCCCACCCATCCACTCAAACTTCCCTGTCCCTGCT
TCCCTTAATCAGGTCGAATGCCACGACTATACAAATATTTTCCGACTCGC
CGTCAAATACTGCATCCACAACCTTC
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Coding sequence (CDS) from alignment at scaffold_5:1026503..1027728-

>mRNA_2721 ID=mRNA_2721|Name=jgi.p|Nanoce1779_2|337195|organism=Nannochloropsis oceanica|type=CDS|length=858bp|location=Sequence derived from alignment at scaffold_5:1026503..1027728- (Nannochloropsis oceanica)
ATGCCGCCTGCGATTACAACCAGCACCTCTCCAATGACCACCGCCACTCC
AGCGACCAGCACCACCGCCACTTTGCTATCCAATCTCACTCCTCAGGTGT
GGGGAAACTTGGTGGTGGAGGCAGACCTGCATTTATCCTTGTTAAACCAC
GAGGGGCGGCTGCTGCGGGACATCTACAAAAAAGTGGACTCCTCCGAGGA
GGCCATAGCTAAGGCTTTTGATATCCTTGACCGCCAAGGGATGGGCTGCT
TGGACTTTGACCAGTTTGTTGAAGGATTGAATCGGTGCCTTTATGCCTTC
GGTGGCACCGCCCTCCCAAAGAATTTATCTTCCCTCGAAACCCTGTGGGC
AGAGGCGTCGACCGGATCCCAGGAGCTCACGCGCCGCGTCTCCCGGGAAG
CATTTGGCCTCGTCCTTAGGAGATTGAAGATGGAAATACTATTATCTATG
ATTCAAGACGCGTTTGACCCAGTTACCTCTCGCAGTACTGTCGCACCTGG
AGGGTATGGTGCCATTAACGGCGATATCGGCGCTAACAACACTGATAAAT
TGCGGCAACTGAACATGTCCAAGCTGGACCGGGCGGACAAGGACATGATG
CTAAAGGTGTTTAATTTTACTAAACGCTCCATGTACAAGTGGGACGTGTC
GGAGGATCGACAAAGAGATTTTTTTTTGACGAATCGCACTTCCGACATAA
TTTTGAAGTGGATCATGGTAAGCGCTTTGACAATCTGGGAAGTACCACAG
TCATTTCGTAAAATGCACAGGGTGTCCAAGTATCCTGGGTTGATATGCAG
CGTACCACTTCTTCCTGCCGCACTTTCTATGTTTTCTTCAGACCGCCGTC
TTCAATAG
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Synonyms
Publications