jgi.p|Nanoce1779_2|581295, mRNA_2720 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581295
Unique Name	mRNA_2720
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3406
Alignment location	scaffold_5:1024219..1027624 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581381
Track	FilteredModels2
ProteinId	581295

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:1024219..1027624 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581295	gene_2720	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581295	mRNA_2720-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2720	CDS_2720	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:1024219..1027624-
coding sequence from alignment at scaffold_5:1024219..1027624-

mRNA sequence

>mRNA_2720 ID=mRNA_2720|Name=jgi.p|Nanoce1779_2|581295|organism=Nannochloropsis oceanica|type=mRNA|length=3406bp
AGATAGGCAAGTCCTTCGCGCTTGAAGCGCCACTTGGTGAAACAATACCT
GGCTTGCGCCGTTGGTGGCCCATCTTCGAAAAAGCATGCCGCCTGCGATT
ACAACCAGCACCTCTCCAATGACCACCGCCACTCCAGCGACCAGCACCAC
CGCCACTTTGCTATCCAATCTCACTCCTCAGGTGTGGGGAAACTTGGTGG
TGGAGGCAGACCTGCATTTATCCTTGTTAAACCACGAGGGGCGGCTGCTG
CGGGACATCTACAAAAAAGTGGACTCCTCCGAGGAGGCCATAGCTAAGGC
TTTTGATATCCTTGACCGCCAAGGGATGGGCTGCTTGGACTTTGACCAGT
TTGTTGAAGGATTGAATCGGTGCCTTTATGCCTTCGGTGGCACCGCCCTC
CCAAAGAATTTATCTTCCCTCGAAACCCTGTGGGCAGAGGCGTCGACCGG
ATCCCAGGAGCTCACGCGCCGCGTCTCCCGGGAAGCATTTGGCCTCGTCC
TTAGGAGATTGAAGATGGAAATACTATTATCTATGATTCAAGACGCGTTT
GACCCAGTTACCTCTCGCAGTACTGTCGCACCTGGAGGGTATGGTGCCAT
TAACGGCGATATCGGCGCTAACAACACTGATAAATTGCGGCAACTGAACA
TGTCCAAGCTGGACCGGGCGGACAAGGACATGATGCTAAAGGTGTTTAAT
TTTACTAAACGCTCCATGTACAAGTGGGACGTGTCGGAGGATCGACAAAG
AGATTTTTTTTTGACGAATCGCACTTCCGACATAATTTTGAAGTGGATCA
TGGTAAGCGCTTTGACAATCTGGGAAGTACCACAGTCATTTCGTAAAATG
CACAGGGTGTCCAAGTATCCTGGGTTGATATGCAGCGTACCACTTCTTCC
TGCCGCACTTTCTATGTTTTCTTCAGACCGCCGTCTTCAATAGCTCCTCC
CTCTCTAAGCTGCTTGCTCACGTACTCTTGATCACTTCTCTCACCTTCTT
TCGACGCATTCTCCCACCCATCCACTCAAACTTCCCTGTCCCTGCTTCCC
TTAATCAGGTCGAATGCCACGACTATACAAATATTTTCCGACTCGCCGTC
AAATACTGCATCCACAACCTTCACCTCGAAGACATCCTAAAGCTCGAGAC
ACAGAAACCCAAGGTGGCCTACCAAGGCGGTAATCATTTTGTCATCATTC
CCACCTTACGCCTATCCCGCGATACCGACAAAGCCCTCCAAACCTGGCGT
GCCGAACATCATGATGACGTTGGGGTGCGGTTGGACAAGCGTGGTCGGCG
CATGACTCCATTCCCCATCATGCTAGAAGAGGCGACTGCAAGTGTGTACT
CCGCCGGCCCCCCCGAGAACGACAGCACAGTTATAACCATTCGAACATCC
TGGCGAACTGTAAATAATAAAACAGGAACCCAAATGACCATGCGCAAGAC
GGCGACCTCCTCCTCCTCCTCTTCAGTTTCAGCCCGGGCTCCGTTGGCGC
GGCAGCCCTCCAGGTCTGGGGAAAGGCAGGCCAGTGAAAAGACCAAGTCT
CGATCAAACGTAATCGCCGTTTCTCCAGACGTTGGCGTTGGTGGCGTTGA
GTGTACACGCAGTGCCAATGGCGATATTCGACCCCACGCGGAGGAGTGCA
CGATGACCTCCGATCAGATTGCGCCCACATGTCTCCAAGTGCCATCTGTC
GCAGGCTCAGCTGCCGAAGAAATACACCGGGTGCTGCGTACGAGTGGGAT
GAGTGCTGGGAGAATAGGTGAAGAAGAAGGGCAGGAAAGCCTTCCGGATG
CCATCGTTGCCGACGAAGATTCCTTGCAGCGGGAAGACTGGGCCCTTTTC
CCTGGTCCGACGGCGCGAGACTTTGACGACATGTCTGTCACCATAGCCTC
GGATCAAGAAGATAATGCATTCGACATGCAAATGATGCACGAGGTGGCTG
AAAGTATCTATCACACCAACAGTACGGCCCTAGATAACACGGCCCAGTGG
CTTTTTCATTCCATTTTTGACCACACTGTGGATCGACTCGCGCCCATCGT
GGAGGCCTATCAGATACGAGTTTCTTATTTCCAAGATATGCTGCACGAGA
GAGGGGCAAATTTCGGCAAGGACAAGACCAAGGCCGTAATGGATACGAAG
CTCGATTTGCTCTGGTTACAGCGACGAGTAGCACTGCTCAAGCCAATCCT
CCGGCAGCTGATGCGGACTGTGCCACCGGAGCTTCAGTTGTACTATCAAG
ACGTTGATGACCACCTGGAGCGATGTTTGGAAGGCCTGTCCGGCCTCTGC
AACACAGCACAAAGCATCGTTGACGAAGCCCACCACCATCGCGAAGAGCG
TATCAATGAAATCCTTCTTTTCATTACGATTATCACAAGCATTTTTACGC
CGGCCTCTTTCCTAGCCAGCGTGTTTGGCATGAACTTTCAAAAGCCCGAG
GGTGGCCCTGGAATACCCGAGCTCAAGTGGCAGCATGGGTACATTTGGTT
TTGGCTGTGGAGTTTTCTCTTATCCGGGGGAGTGCTGGCTTGCGTGCGCT
ACAAAGTAGGCGATCGGATACGATGGTGGGGGTGATTGCGAACGGTGCAA
GTATATTTATATCGATCGGATACCATGGTCGGCATGATTGCGAGCGGCGC
AGATCTGCCCATTACCTCTTACGTTTGTGTTTATACTAGGGTTTGAGTGT
ATGTAGATATATTGTGTACAAGAAGTTGGGTGCAGGATGCATACCCTACA
TGGAGAGTATGTGGTAATCATTTCAAGGAACTTGAGAACTCCGCACGATA
TATTTCTTTTTTGGGTTGCCTTGCGGCTGTTGTTGAACTTGGAGGCGCCA
TATACCGCGATCACATGACCGGCAACAGAAGGAGCGGCGTGTTCTGAGCG
GGATGGCGTCATAGTCCCGCGGAAACGCAAGTGGCCTGATGCCGGCAGCT
ACTCCGTCACGCGGGACAAGCTTATTTTGGTGCTCACATGATGTCGATAT
TTTTATAACCACGACGGTAACGTTTTGTAGTTGTCAAAATGACGAGTGCA
GATGCTTACCCTGGGCTTTCTGTGACTTTCTCTCAAGCATCTGTTTACAA
TTAAATTGTCACATACATATTTACATTCGTCATTAACAATACACTTGACA
TGGCTCTTGTGATTCTTTCATGAATTCGATGTTGACCCTGGTCAAGCCTC
TTTACGTATCGAAACATTTGACAGGTCGTTTGTATCCACCGACATGGCTT
TTTAGTTTCTTTCGGGATTGATTGATTGTTTCCTTAACCAGTTCGATGTC
GACCTTGATGACACCTTTCGCTTATAGCAAAAATATTTCGATATTCGAAA
TACTTTATGGATCGTATAAGATGCCAAAGTTTTTAACCTCCCCACACCCC
TCGAGC

protein sequence of jgi.p|Nanoce1779_2|581295

>mRNA_2720-protein ID=mRNA_2720-protein|Name=jgi.p|Nanoce1779_2|581295|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MTPFPIMLEEATASVYSAGPPENDSTVITIRTSWRTVNNKTGTQMTMRKT
ATSSSSSSVSARAPLARQPSRSGERQASEKTKSRSNVIAVSPDVGVGGVE
CTRSANGDIRPHAEECTMTSDQIAPTCLQVPSVAGSAAEEIHRVLRTSGM
SAGRIGEEEGQESLPDAIVADEDSLQREDWALFPGPTARDFDDMSVTIAS
DQEDNAFDMQMMHEVAESIYHTNSTALDNTAQWLFHSIFDHTVDRLAPIV
EAYQIRVSYFQDMLHERGANFGKDKTKAVMDTKLDLLWLQRRVALLKPIL
RQLMRTVPPELQLYYQDVDDHLERCLEGLSGLCNTAQSIVDEAHHHREER
INEILLFITIITSIFTPASFLASVFGMNFQKPEGGPGIPELKWQHGYIWF
WLWSFLLSGGVLACVRYKVGDRIRWWG*

mRNA from alignment at scaffold_5:1024219..1027624-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2720 ID=mRNA_2720|Name=jgi.p|Nanoce1779_2|581295|organism=Nannochloropsis oceanica|type=mRNA|length=3406bp|location=Sequence derived from alignment at scaffold_5:1024219..1027624- (Nannochloropsis oceanica)
AGATAGGCAAGTCCTTCGCGCTTGAAGCGCCACTTGGTGAAACAATACCT
GGCTTGCGCCGTTGGTGGCCCATCTTCGAAAAAGCATGCCGCCTGCGATT
ACAACCAGCACCTCTCCAATGACCACCGCCACTCCAGCGACCAGCACCAC
CGCCACTTTGCTATCCAATCTCACTCCTCAGGTGTGGGGAAACTTGGTGG
TGGAGGCAGACCTGCATTTATCCTTGTTAAACCACGAGGGGCGGCTGCTG
CGGGACATCTACAAAAAAGTGGACTCCTCCGAGGAGGCCATAGCTAAGGC
TTTTGATATCCTTGACCGCCAAGGGATGGGCTGCTTGGACTTTGACCAGT
TTGTTGAAGGATTGAATCGGTGCCTTTATGCCTTCGGTGGCACCGCCCTC
CCAAAGAATTTATCTTCCCTCGAAACCCTGTGGGCAGAGGCGTCGACCGG
ATCCCAGGAGCTCACGCGCCGCGTCTCCCGGGAAGCATTTGGCCTCGTCC
TTAGGAGATTGAAGATGGAAATACTATTATCTATGATTCAAGACGCGTTT
GACCCAGTTACCTCTCGCAGTACTGTCGCACCTGGAGGGTATGGTGCCAT
TAACGGCGATATCGGCGCTAACAACACTGATAAATTGCGGCAACTGAACA
TGTCCAAGCTGGACCGGGCGGACAAGGACATGATGCTAAAGGTGTTTAAT
TTTACTAAACGCTCCATGTACAAGTGGGACGTGTCGGAGGATCGACAAAG
AGATTTTTTTTTGACGAATCGCACTTCCGACATAATTTTGAAGTGGATCA
TGGTAAGCGCTTTGACAATCTGGGAAGTACCACAGTCATTTCGTAAAATG
CACAGGGTGTCCAAGTATCCTGGGTTGATATGCAGCGTACCACTTCTTCC
TGCCGCACTTTCTATGTTTTCTTCAGACCGCCGTCTTCAATAGCTCCTCC
CTCTCTAAGCTGCTTGCTCACGTACTCTTGATCACTTCTCTCACCTTCTT
TCGACGCATTCTCCCACCCATCCACTCAAACTTCCCTGTCCCTGCTTCCC
TTAATCAGGTCGAATGCCACGACTATACAAATATTTTCCGACTCGCCGTC
AAATACTGCATCCACAACCTTCACCTCGAAGACATCCTAAAGCTCGAGAC
ACAGAAACCCAAGGTGGCCTACCAAGGCGGTAATCATTTTGTCATCATTC
CCACCTTACGCCTATCCCGCGATACCGACAAAGCCCTCCAAACCTGGCGT
GCCGAACATCATGATGACGTTGGGGTGCGGTTGGACAAGCGTGGTCGGCG
CATGACTCCATTCCCCATCATGCTAGAAGAGGCGACTGCAAGTGTGTACT
CCGCCGGCCCCCCCGAGAACGACAGCACAGTTATAACCATTCGAACATCC
TGGCGAACTGTAAATAATAAAACAGGAACCCAAATGACCATGCGCAAGAC
GGCGACCTCCTCCTCCTCCTCTTCAGTTTCAGCCCGGGCTCCGTTGGCGC
GGCAGCCCTCCAGGTCTGGGGAAAGGCAGGCCAGTGAAAAGACCAAGTCT
CGATCAAACGTAATCGCCGTTTCTCCAGACGTTGGCGTTGGTGGCGTTGA
GTGTACACGCAGTGCCAATGGCGATATTCGACCCCACGCGGAGGAGTGCA
CGATGACCTCCGATCAGATTGCGCCCACATGTCTCCAAGTGCCATCTGTC
GCAGGCTCAGCTGCCGAAGAAATACACCGGGTGCTGCGTACGAGTGGGAT
GAGTGCTGGGAGAATAGGTGAAGAAGAAGGGCAGGAAAGCCTTCCGGATG
CCATCGTTGCCGACGAAGATTCCTTGCAGCGGGAAGACTGGGCCCTTTTC
CCTGGTCCGACGGCGCGAGACTTTGACGACATGTCTGTCACCATAGCCTC
GGATCAAGAAGATAATGCATTCGACATGCAAATGATGCACGAGGTGGCTG
AAAGTATCTATCACACCAACAGTACGGCCCTAGATAACACGGCCCAGTGG
CTTTTTCATTCCATTTTTGACCACACTGTGGATCGACTCGCGCCCATCGT
GGAGGCCTATCAGATACGAGTTTCTTATTTCCAAGATATGCTGCACGAGA
GAGGGGCAAATTTCGGCAAGGACAAGACCAAGGCCGTAATGGATACGAAG
CTCGATTTGCTCTGGTTACAGCGACGAGTAGCACTGCTCAAGCCAATCCT
CCGGCAGCTGATGCGGACTGTGCCACCGGAGCTTCAGTTGTACTATCAAG
ACGTTGATGACCACCTGGAGCGATGTTTGGAAGGCCTGTCCGGCCTCTGC
AACACAGCACAAAGCATCGTTGACGAAGCCCACCACCATCGCGAAGAGCG
TATCAATGAAATCCTTCTTTTCATTACGATTATCACAAGCATTTTTACGC
CGGCCTCTTTCCTAGCCAGCGTGTTTGGCATGAACTTTCAAAAGCCCGAG
GGTGGCCCTGGAATACCCGAGCTCAAGTGGCAGCATGGGTACATTTGGTT
TTGGCTGTGGAGTTTTCTCTTATCCGGGGGAGTGCTGGCTTGCGTGCGCT
ACAAAGTAGGCGATCGGATACGATGGTGGGGGTGATTGCGAACGGTGCAA
GTATATTTATATCGATCGGATACCATGGTCGGCATGATTGCGAGCGGCGC
AGATCTGCCCATTACCTCTTACGTTTGTGTTTATACTAGGGTTTGAGTGT
ATGTAGATATATTGTGTACAAGAAGTTGGGTGCAGGATGCATACCCTACA
TGGAGAGTATGTGGTAATCATTTCAAGGAACTTGAGAACTCCGCACGATA
TATTTCTTTTTTGGGTTGCCTTGCGGCTGTTGTTGAACTTGGAGGCGCCA
TATACCGCGATCACATGACCGGCAACAGAAGGAGCGGCGTGTTCTGAGCG
GGATGGCGTCATAGTCCCGCGGAAACGCAAGTGGCCTGATGCCGGCAGCT
ACTCCGTCACGCGGGACAAGCTTATTTTGGTGCTCACATGATGTCGATAT
TTTTATAACCACGACGGTAACGTTTTGTAGTTGTCAAAATGACGAGTGCA
GATGCTTACCCTGGGCTTTCTGTGACTTTCTCTCAAGCATCTGTTTACAA
TTAAATTGTCACATACATATTTACATTCGTCATTAACAATACACTTGACA
TGGCTCTTGTGATTCTTTCATGAATTCGATGTTGACCCTGGTCAAGCCTC
TTTACGTATCGAAACATTTGACAGGTCGTTTGTATCCACCGACATGGCTT
TTTAGTTTCTTTCGGGATTGATTGATTGTTTCCTTAACCAGTTCGATGTC
GACCTTGATGACACCTTTCGCTTATAGCAAAAATATTTCGATATTCGAAA
TACTTTATGGATCGTATAAGATGCCAAAGTTTTTAACCTCCCCACACCCC
TCGAGC

Coding sequence (CDS) from alignment at scaffold_5:1024219..1027624-

>mRNA_2720 ID=mRNA_2720|Name=jgi.p|Nanoce1779_2|581295|organism=Nannochloropsis oceanica|type=CDS|length=1284bp|location=Sequence derived from alignment at scaffold_5:1024219..1027624- (Nannochloropsis oceanica)
ATGACTCCATTCCCCATCATGCTAGAAGAGGCGACTGCAAGTGTGTACTC
CGCCGGCCCCCCCGAGAACGACAGCACAGTTATAACCATTCGAACATCCT
GGCGAACTGTAAATAATAAAACAGGAACCCAAATGACCATGCGCAAGACG
GCGACCTCCTCCTCCTCCTCTTCAGTTTCAGCCCGGGCTCCGTTGGCGCG
GCAGCCCTCCAGGTCTGGGGAAAGGCAGGCCAGTGAAAAGACCAAGTCTC
GATCAAACGTAATCGCCGTTTCTCCAGACGTTGGCGTTGGTGGCGTTGAG
TGTACACGCAGTGCCAATGGCGATATTCGACCCCACGCGGAGGAGTGCAC
GATGACCTCCGATCAGATTGCGCCCACATGTCTCCAAGTGCCATCTGTCG
CAGGCTCAGCTGCCGAAGAAATACACCGGGTGCTGCGTACGAGTGGGATG
AGTGCTGGGAGAATAGGTGAAGAAGAAGGGCAGGAAAGCCTTCCGGATGC
CATCGTTGCCGACGAAGATTCCTTGCAGCGGGAAGACTGGGCCCTTTTCC
CTGGTCCGACGGCGCGAGACTTTGACGACATGTCTGTCACCATAGCCTCG
GATCAAGAAGATAATGCATTCGACATGCAAATGATGCACGAGGTGGCTGA
AAGTATCTATCACACCAACAGTACGGCCCTAGATAACACGGCCCAGTGGC
TTTTTCATTCCATTTTTGACCACACTGTGGATCGACTCGCGCCCATCGTG
GAGGCCTATCAGATACGAGTTTCTTATTTCCAAGATATGCTGCACGAGAG
AGGGGCAAATTTCGGCAAGGACAAGACCAAGGCCGTAATGGATACGAAGC
TCGATTTGCTCTGGTTACAGCGACGAGTAGCACTGCTCAAGCCAATCCTC
CGGCAGCTGATGCGGACTGTGCCACCGGAGCTTCAGTTGTACTATCAAGA
CGTTGATGACCACCTGGAGCGATGTTTGGAAGGCCTGTCCGGCCTCTGCA
ACACAGCACAAAGCATCGTTGACGAAGCCCACCACCATCGCGAAGAGCGT
ATCAATGAAATCCTTCTTTTCATTACGATTATCACAAGCATTTTTACGCC
GGCCTCTTTCCTAGCCAGCGTGTTTGGCATGAACTTTCAAAAGCCCGAGG
GTGGCCCTGGAATACCCGAGCTCAAGTGGCAGCATGGGTACATTTGGTTT
TGGCTGTGGAGTTTTCTCTTATCCGGGGGAGTGCTGGCTTGCGTGCGCTA
CAAAGTAGGCGATCGGATACGATGGTGGGGGTGA

Synonyms

Publications