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Properties
| Property Name | Value |
|---|
| TranscriptId | 576862 |
| Track | FilteredModels2 |
| ProteinId | 576776 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:674246..677248 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_272 ID=mRNA_272|Name=jgi.p|Nanoce1779_2|576776|organism=Nannochloropsis oceanica|type=mRNA|length=2801bp
AAAGGTCAAAACATATCGGCGGCCGAATTCGAATACTGCTATGGCATCTA
GCAGCGACAGCAGAAGCAGCAGCAGCAGCAGCGGCAGCACCAGCGGCAGC
CTCCGAAAGGGCACTCGCCCCCTGCGGATTGGCATCGCCGGCCCCCCAGG
TGCCGGCAAGTCCACTTTTATTGAGTCCCTGGGCATGTATTTGCTGGATA
GCAAGGGACTGCGCGTAGCCGTCATCGCGGTCGATCCCTCTTCGTCTCGC
AGCGGTGGTTCAATCTTGGGGGACAAGACACGGATGTACGAGCTGTCTAA
GGACCCTCGGGCATTCGTACGTGCCTGCCCGACCAGTGGGGTGCTTGGGG
GGGTGGCACGCTATACGAATGACGTCGTGCTGCTATGCCAGGCGGCTGCT
TTTGATGTTGTATTCATCGAGACGGTGGGGCTGGGACAATCGGAGATCAT
GATCGACCAGACCTCGGATATGCTGTTGCTGCTGGTGCCGCCCGGAGGGG
GGGATGAGCTGCAGGGCGTTAAAAAGGGCATTATGGAGGTGGCCGACGTG
GTGGTGGTCAATAAGGCTGATGGCCACTTACTCACAGCTGCGCAGCACAC
AGCTGCTGAGTATAAACATGCCTTGTGTTTTCAGCGACGGAAATGGGAGC
CGTGGACGCCGACTGTGACAATGTGTTCAGCTTTAAGAAGGGAGAAGATT
GCGAAGGTCTGGGAGGAGGTTAGTCGGTGCAGTGACGTGTTGGACAAGAC
AGGGTTTTTGAGGTTGAAGAGGAGAGATCAAGGAAGGCATTGGATGTGGA
GTAGTTTGGAAGATTTGCTCGTGAGGAAGGTGAGGGGGTCGGGGGCGGTG
GAACGGAAGGCGGTAAGGATGGAGGAGGAGCTGGCGGATGGTACCTTGAC
GCCACGATCGGCGGCCGAGATGTTGTTGGTTGCCTTTTTAGAGGAGCAAC
GGACCACCGAAGTGGCGAGAAAGAAGTAGCGCAGGAAGAGGAGGAGGCAT
AGAAATAAAGATAAAAGGCAGAAAGGTAGACATGTACAGCGACGGATGTG
TTCAACCGAAAGATGAAATGTTACGACGTGCGGGCAGGGATTGTTTTTTT
TTTCGATTTTGGCAATCTGCTGGAAACCGACAACTTGCGGGTCAGCTTAG
GCCTGAAACATGTTTTGTGAGTAAAAAAGTCAGGGGTGGGGAATAGCATG
TGTTGTTCAGTGGTTGCACTCCCTTATTTTTCATGTTCAATTTTCTCTTC
TTTTCTCCATTTTGCTTGCGTTTCATCTTCTCACATGCCATACTCCTTGC
CCTAAGCGGTTCGTGACGTCTCTCACAACGAGAATTGTATATACTTAGTT
TCTTAGTTTTTTCTTTCTCTCTTCCACCTCTCCACACACAAGAGTACTTT
CTGTCCCTTACCACGTTATATCAAATTGTTCAACACGACGCGGTGGCGGT
AGAAGAGAAAGGAAGAGGTTTGGCAGTTCTTTCTCCTTGCTGTAGTTGTC
GCAGCTTCACGAACTTTTCAGCCCTTGATATTCGTTTCCCTTCCTCCTAT
GGCCCGTCAAAATGCCTTTGCCTTTCCGTCCTTCTCTCCTGTTCGCTCGG
TACAGTCCACACGTACGGACGCTTGCTCGTCAATCAATGACCAGAACAAC
TGGAATTGAAAAAAAAATCTTCCCTCCATCCCTCCTTACCTCCCTTTCCT
CCTGCAGCTTAGAGAAGGTCATCGTCACTGTAGCACAGCTCCTCATCATC
TCCCAACCGCTGGGCGTCACCCCAATATTCAGCATTCTTGAAGCTGCCAC
TGTTGTAATCGCCACCTAGTCCAGCGCCCATGGCCATAGAGCGTTTGATC
TTGTAAAAGTCAGCCTCCCCTCCCTCCTCCCCATCATCCCATCTCCTTGC
TACCTGATCTCCGTCACTAGCTACAGCTGCGCCGGACACAAGTGCAGGAA
AGTCGCTCCCCACACAACCACCAGCCACCTCCTCCTCTGTCGCCGAGCCT
GCGTCCGGCCGATCAAAGGGACTCATCCGGGACTTCTTTTTGTCGCGGCC
CTTGCCACCGGTACTGCCCGGTCCGCCCTCCTGTGTAATGATAATCTCCT
GTCCGTCAAGCCCATCGCTGCTGTCGTCGTCGTGGACTTCCGCCACATGC
ATGCCGCCACCGCTATCACCACAGTTGGGAGTGTCGTGGCTGTGACTGTG
AGGGCGGGAGGATGACCCGGGCGTCTTGACCACCGCAGCGTAGGAAGGGC
CGCCAGATTGTGGAAGATCATTGCTACTAGAGGGAGAAGAGGAGAATGAG
AAGTGGGAAGTACCAATCATGGTTTCTTTTGGGTCGAATTCATGGAGTCG
CCGGCGCCAGGCCCGGACCAGGCCATTAAACCGCTTGGTGCTGATACGAG
CGTGGATGTCGGGTGTCTTTGGGTCGGCGCGACGCCGACGTTCCTTTGGC
ACCAGCTGCGTGTACCGGTCATAGCCCAACGTATTTTTGCCGTAGTCCAC
CTGCTTTTGGCGCTGCCGGAGTCGGTGCGGGTCCGTTTCTTCCCCCAGCA
CCGCCACGGTCAGCGCTCCCGTCCCTCCTGCCGCATGCCTATTGCCGCGG
GCTTGGAGGACACTGCTATTTATCTCAGGGGTGGCGCCAACAAGGCAACT
GGGTAGGCGGGGCTTGGGCGCTTGGCCCTCCTCGACTTCGGCACGCACGC
GCTTGCTTGCCAAGCGCGCCGGGAGTTCCGTGTCCATGGGGTGGAGGCTG
ACGTTGGCTTTGGCTGGGGCTATAGGTGGATGCCTTGTCTTTTTATCCTG
T back to topprotein sequence of jgi.p|Nanoce1779_2|576776 >mRNA_272-protein ID=mRNA_272-protein|Name=jgi.p|Nanoce1779_2|576776|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MASSSDSRSSSSSSGSTSGSLRKGTRPLRIGIAGPPGAGKSTFIESLGMY
LLDSKGLRVAVIAVDPSSSRSGGSILGDKTRMYELSKDPRAFVRACPTSG
VLGGVARYTNDVVLLCQAAAFDVVFIETVGLGQSEIMIDQTSDMLLLLVP
PGGGDELQGVKKGIMEVADVVVVNKADGHLLTAAQHTAAEYKHALCFQRR
KWEPWTPTVTMCSALRREKIAKVWEEVSRCSDVLDKTGFLRLKRRDQGRH
WMWSSLEDLLVRKVRGSGAVERKAVRMEEELADGTLTPRSAAEMLLVAFL
EEQRTTEVARKK* back to topmRNA from alignment at scaffold_3:674246..677248- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_272 ID=mRNA_272|Name=jgi.p|Nanoce1779_2|576776|organism=Nannochloropsis oceanica|type=mRNA|length=3003bp|location=Sequence derived from alignment at scaffold_3:674246..677248- (Nannochloropsis oceanica)
AAAGGTCAAAACATATCGGCGGCCGAATTCGAATACTGCTATGGCATCTA
GCAGCGACAGCAGAAGCAGCAGCAGCAGCAGCGGCAGCACCAGCGGCAGC
CTCCGAAAGGGCACTCGCCCCCTGCGGATTGGCATCGCCGGCCCCCCAGG
TGCCGGCAAGTCCACTTTTATTGAGTCCCTGGGCATGTATTTGCTGGATA
GCAAGGGACTGGTGCGTCTACGGATGAGGGGGAAAGACAATAAATCTGGA
TGCAGTAGAGGAGAGTAAAATGTACCACATTCGCCTCACTTCTCTCTCAT
TTCTTCTACCCCTATGACCACGCACAGCGCGTAGCCGTCATCGCGGTCGA
TCCCTCTTCGTCTCGCAGCGGTGGTTCAATCTTGGGGGACAAGACACGGA
TGTACGAGCTGTCTAAGGACCCTCGGGCATTCGTACGTGCCTGCCCGACC
AGTGGGGTGCTTGGGGGGGTGGCACGCTATACGAATGACGTCGTGCTGCT
ATGCCAGGCGGCTGCTTTTGATGTTGTATTCATCGAGACGGTGGGGCTGG
GACAATCGGAGATCATGATCGACCAGACCTCGGATATGCTGTTGCTGCTG
GTGCCGCCCGGAGGGGGGGATGAGCTGCAGGGCGTTAAAAAGGGCATTAT
GGAGGTGGCCGACGTGGTGGTGGTCAATAAGGCTGATGGCCACTTACTCA
CAGCTGCGCAGCACACAGCTGCTGAGTATAAACATGCCTTGTGTTTTCAG
CGACGGAAATGGGAGCCGTGGACGCCGACTGTGACAATGTGTTCAGCTTT
AAGAAGGGAGAAGATTGCGAAGGTCTGGGAGGAGGTTAGTCGGTGCAGTG
ACGTGTTGGACAAGACAGGGTTTTTGAGGTTGAAGAGGAGAGATCAAGGA
AGGCATTGGATGTGGAGTAGTTTGGAAGATTTGCTCGTGAGGAAGGTGAG
GGGGTCGGGGGCGGTGGAACGGAAGGCGGTAAGGATGGAGGAGGAGCTGG
CGGATGGTACCTTGACGCCACGATCGGCGGCCGAGATGTTGTTGGTTGCC
TTTTTAGAGGAGCAACGGACCACCGAAGTGGCGAGAAAGAAGTAGCGCAG
GAAGAGGAGGAGGCATAGAAATAAAGATAAAAGGCAGAAAGGTAGACATG
TACAGCGACGGATGTGTTCAACCGAAAGATGAAATGTTACGACGTGCGGG
CAGGGATTGTTTTTTTTTTCGATTTTGGCAATCTGCTGGAAACCGACAAC
TTGCGGGTCAGCTTAGGCCTGAAACATGTTTTGTGAGTAAAAAAGTCAGG
GGTGGGGAATAGCATGTGTTGTTCAGTGGTTGCACTCCCTTATTTTTCAT
GTTCAATTTTCTCTTCTTTTCTCCATTTTGCTTGCGTTTCATCTTCTCAC
ATGCCATACTCCTTGCCCTAAGCGGTTCGTGACGTCTCTCACAACGAGAA
TTGTATATACTTAGTTTCTTAGTTTTTTCTTTCTCTCTTCCACCTCTCCA
CACACAAGAGTACTTTCTGTCCCTTACCACGTTATATCAAATTGTTCAAC
ACGACGCGGTGGCGGTAGAAGAGAAAGGAAGAGGTTTGGCAGTTCTTTCT
CCTTGCTGTAGTTGTCGCAGCTTCACGAACTTTTCAGCCCTTGATATTCG
TTTCCCTTCCTCCTATGGCCCGTCAAAATGCCTTTGCCTTTCCGTCCTTC
TCTCCTGTTCGCTCGGTACAGTCCACACGTACGGACGCTTGCTCGTCAAT
CAATGACCAGAACAACTGGAATTGAAAAAAAAATCTTCCCTCCATCCCTC
CTTACCTCCCTTTCCTCCTGCAGCTTAGAGAAGGTCATCGTCACTGTAGC
ACAGCTCCTCATCATCTCCCAACCGCTGGGCGTCACCCCAATATTCAGCA
TTCTTGAAGCTGCCACTGTTGTAATCGCCACCTAGTCCAGCGCCCATGGC
CATAGAGCGTTTGATCTTGTAAAAGTCAGCCTCCCCTCCCTCCTCCCCAT
CATCCCATCTCCTTGCTACCTGATCTCCGTCACTAGCTACAGCTGCGCCG
GACACAAGTGCAGGAAAGTCGCTCCCCACACAACCACCAGCCACCTCCTC
CTCTGTCGCCGAGCCTGCGTCCGGCCGATCAAAGGGACTCATCCGGGACT
TCTTTTTGTCGCGGCCCTTGCCACCGGTACTGCCCGGTCCGCCCTCCTGT
GTAATGATAATCTCCTGTCCGTCAAGCCCATCGCTGCTGTCGTCGTCGTG
GACTTCCGCCACATGCATGCCGCCACCGCTATCACCACAGTTGGGAGTGT
CGTGGCTGTGACTGTGAGGGCGGGAGGATGACCCGGGCGTCTTGACCACC
GCAGCGTAGGAAGGGCCGCCAGATTGTGGAAGATCATTGCTACTAGAGGG
AGAAGAGGAGAATGAGAAGTGGGAAGTACCAATCATGGTTTCTTTTGGGT
CGAATTCATGGAGTCGCCGGCGCCAGGCCCGGACCAGGCCATTAAACCGC
TTGGTGCTGATACGAGCGTGGATGTCGGGTGTCTTTGGGTCGGCGCGACG
CCGACGTTCCTTTGGCACCAGCTGCGTGTACCGGTCATAGCCCAACGTAT
TTTTGCCGTAGTCCACCTGCTTTTGGCGCTGCCGGAGTCGGTGCGGGTCC
GTTTCTTCCCCCAGCACCGCCACGGTCAGCGCTCCCGTCCCTCCTGCCGC
ATGCCTATTGCCGCGGGCTTGGAGGACACTGCTATTTATCTCAGGGGTGG
CGCCAACAAGGCAACTGGGTAGGCGGGGCTTGGGCGCTTGGCCCTCCTCG
ACTTCGGCACGCACGCGCTTGCTTGCCAAGCGCTTTTGGGACGGGGGGAC
GGAAGGGAGGGAAGAAGGTGAGGAGGGAGGTAGCAGGTGGAGAGGGTAAA
AAAAAGGCGGGGACTTACCGCCGGGAGTTCCGTGTCCATGGGGTGGAGGC
TGACGTTGGCTTTGGCTGGGGCTATAGGTGGATGCCTTGTCTTTTTATCC
TGT back to topCoding sequence (CDS) from alignment at scaffold_3:674246..677248- >mRNA_272 ID=mRNA_272|Name=jgi.p|Nanoce1779_2|576776|organism=Nannochloropsis oceanica|type=CDS|length=1878bp|location=Sequence derived from alignment at scaffold_3:674246..677248- (Nannochloropsis oceanica)
GCGCGTAGCCGTCATCGCGGTCGATCCCTCTTCGTCTCGCAGCGGTGGTT
CAATCTTGGGGGACAAGACACGGATGTACGAGCTGTCTAAGGACCCTCGG
GCATTCGTACGTGCCTGCCCGACCAGTGGGGTGCTTGGGGGGGTGGCACG
CTATACGAATGACGTCGTGCTGCTATGCCAGGCGGCTGCTTTTGATGTTG
TATTCATCGAGACGGTGGGGCTGGGACAATCGGAGATCATGATCGACCAG
ACCTCGGATATGCTGTTGCTGCTGGTGCCGCCCGGAGGGGGGGATGAGCT
GCAGGGCGTTAAAAAGGGCATTATGGAGGTGGCCGACGTGGTGGTGGTCA
ATAAGGCTGATGGCCACTTACTCACAGCTGCGCAGCACACAGCTGCTGAG
TATAAACATGCCTTGTGTTTTCAGCGACGGAAATGGGAGCCGTGGACGCC
GACTGTGACAATGTGTTCAGCTTTAAGAAGGGAGAAGATTGCGAAGGTCT
GGGAGGAGGTTAGTCGGTGCAGTGACGTGTTGGACAAGACAGGGTTTTTG
AGGTTGAAGAGGAGAGATCAAGGAAGGCATTGGATGTGGAGTAGTTTGGA
AGATTTGCTCGTGAGGAAGGTGAGGGGGTCGGGGGCGGTGGAACGGAAGG
CGGTAAGGATGGAGGAGGAGCTGGCGGATGGTACCTTGACGCCACGATCG
GCGGCCGAGATGTTGTTGGTTGCCTTTTTAGAGGAGCAACGGACCACCGA
AGTGGCGAGAAAGAAGTAGATGGCATCTAGCAGCGACAGCAGAAGCAGCA
GCAGCAGCAGCGGCAGCACCAGCGGCAGCCTCCGAAAGGGCACTCGCCCC
CTGCGGATTGGCATCGCCGGCCCCCCAGGTGCCGGCAAGTCCACTTTTAT
TGAGTCCCTGGGCATGTATTTGCTGGATAGCAAGGGACTGCGCGTAGCCG
TCATCGCGGTCGATCCCTCTTCGTCTCGCAGCGGTGGTTCAATCTTGGGG
GACAAGACACGGATGTACGAGCTGTCTAAGGACCCTCGGGCATTCGTACG
TGCCTGCCCGACCAGTGGGGTGCTTGGGGGGGTGGCACGCTATACGAATG
ACGTCGTGCTGCTATGCCAGGCGGCTGCTTTTGATGTTGTATTCATCGAG
ACGGTGGGGCTGGGACAATCGGAGATCATGATCGACCAGACCTCGGATAT
GCTGTTGCTGCTGGTGCCGCCCGGAGGGGGGGATGAGCTGCAGGGCGTTA
AAAAGGGCATTATGGAGGTGGCCGACGTGGTGGTGGTCAATAAGGCTGAT
GGCCACTTACTCACAGCTGCGCAGCACACAGCTGCTGAGTATAAACATGC
CTTGTGTTTTCAGCGACGGAAATGGGAGCCGTGGACGCCGACTGTGACAA
TGTGTTCAGCTTTAAGAAGGGAGAAGATTGCGAAGGTCTGGGAGGAGGTT
AGTCGGTGCAGTGACGTGTTGGACAAGACAGGGTTTTTGAGGTTGAAGAG
GAGAGATCAAGGAAGGCATTGGATGTGGAGTAGTTTGGAAGATTTGCTCG
TGAGGAAGGTGAGGGGGTCGGGGGCGGTGGAACGGAAGGCGGTAAGGATG
GAGGAGGAGCTGGCGGATGGTACCTTGACGCCACGATCGGCGGCCGAGAT
GTTGTTGGTTGCCTTTTTAGAGGAGCAACGGACCACCGAAGTGGCGAGAA
AGAAGTAGATGGCATCTAGCAGCGACAGCAGAAGCAGCAGCAGCAGCAGC
GGCAGCACCAGCGGCAGCCTCCGAAAGGGCACTCGCCCCCTGCGGATTGG
CATCGCCGGCCCCCCAGGTGCCGGCAAGTCCACTTTTATTGAGTCCCTGG
GCATGTATTTGCTGGATAGCAAGGGACT back to top
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