jgi.p|Nanoce1779_2|581289, mRNA_2719 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581289
Unique NamemRNA_2719
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length729
Alignment locationscaffold_5:1022715..1023624 -

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Properties
Property NameValue
TranscriptId581375
TrackFilteredModels2
ProteinId581289
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1022715..1023624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581289gene_2719Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581289mRNA_2719-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2719CDS_2719Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2719 ID=mRNA_2719|Name=jgi.p|Nanoce1779_2|581289|organism=Nannochloropsis oceanica|type=mRNA|length=729bp
ACAGACCAACACCCCCGTTTTTCTTCTCCTGCCGCAATTCGTCTAGAGTC
TGCTCAAATCAATTTATCATGGCCACACGTCGCCGCCAGTCCTGCTTTTC
CCCCTTGTGCTTGGCCGCCGCCTTATCTATGGTGCTCGCTTCGACGCACG
GCTTTGTCCTGGTTATTGCCCTCAAGACACCCAAGCCCACCTTTGGCGGC
ATTGCTCATGCTGGGATCCTAGTTTCGGATACCCAAGCGTCGCTGAATTT
CTACCTCCGCACCCTCGGCTTCGAGGACGACACCCACATGCGTCCATCCA
CCCTCCCATTTCCCGGGGCCTTCGTCCGCGGCGGTGCTCAACAAATTCAT
CTCATGGAGCTGCCTAACCCAGACCCGACACGTGGGCGTCCCGAGCATGG
GGGGAGGGATAGACACGTCGCTTTTACTGTCGAAAATATCGAGCCGCTGC
TAGAGAGATTGACCGAGGGGGGGGTACCTTACACCATGAGTAAGTCAGGC
AGACGGGCCGTGTTTTGCCGGGATCCGGATGGGAATGCGCTTGAGTTCAT
GGAGGAACGAAGCGTGGGGACGATGAAGGAGGGAGAGAAGGAGGAATTGT
GAGGGCAAAGGGAGGGAAGGAAGGGGGGGTTGCGGCGAGTGGGAGGGAGG
GAGGATGTATGGGAGACAAGGAGCGACTGGTGTGTACATGAGAAAGCTAT
CACGAGAAAGAGGAAAAATCGCATTTGGC
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protein sequence of jgi.p|Nanoce1779_2|581289

>mRNA_2719-protein ID=mRNA_2719-protein|Name=jgi.p|Nanoce1779_2|581289|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MATRRRQSCFSPLCLAAALSMVLASTHGFVLVIALKTPKPTFGGIAHAGI
LVSDTQASLNFYLRTLGFEDDTHMRPSTLPFPGAFVRGGAQQIHLMELPN
PDPTRGRPEHGGRDRHVAFTVENIEPLLERLTEGGVPYTMSKSGRRAVFC
RDPDGNALEFMEERSVGTMKEGEKEEL*
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mRNA from alignment at scaffold_5:1022715..1023624-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2719 ID=mRNA_2719|Name=jgi.p|Nanoce1779_2|581289|organism=Nannochloropsis oceanica|type=mRNA|length=910bp|location=Sequence derived from alignment at scaffold_5:1022715..1023624- (Nannochloropsis oceanica)
ACAGACCAACACCCCCGTTTTTCTTCTCCTGCCGCAATTCGTCTAGAGTC
TGCTCAAATCAATTTATCATGGCCACACGTCGCCGCCAGTCCTGCTTTTC
CCCCTTGTGCTTGGCCGCCGCCTTATCTATGGTGCTCGCTTCGACGCACG
GCTTTGTCCTGGTTATTGCCCTCAAGACACCCAAGCCCACCTTTGGCGGC
ATTGCTCATGCTGGGATCCTAGTTTCGGATACCCAAGCGTCGCTGGTACG
TTTTCTGTGTAGGCCCCGCTTCTGCCACAACGACGAAGTTTATGTCGACT
GGGGAGGGATGGTAGTGATGATAATAACCATGGATGACTCGACTTCCAGG
AGATAGACTTTTTTATGCCATGACCCCCATCTTACTTTCTTCACCTTCGG
TCCCACCTCTTAACATGTCCTCAAAGAATTTCTACCTCCGCACCCTCGGC
TTCGAGGACGACACCCACATGCGTCCATCCACCCTCCCATTTCCCGGGGC
CTTCGTCCGCGGCGGTGCTCAACAAATTCATCTCATGGAGCTGCCTAACC
CAGACCCGACACGTGGGCGTCCCGAGCATGGGGGGAGGGATAGACACGTC
GCTTTTACTGTCGAAAATATCGAGCCGCTGCTAGAGAGATTGACCGAGGG
GGGGGTACCTTACACCATGAGTAAGTCAGGCAGACGGGCCGTGTTTTGCC
GGGATCCGGATGGGAATGCGCTTGAGTTCATGGAGGAACGAAGCGTGGGG
ACGATGAAGGAGGGAGAGAAGGAGGAATTGTGAGGGCAAAGGGAGGGAAG
GAAGGGGGGGTTGCGGCGAGTGGGAGGGAGGGAGGATGTATGGGAGACAA
GGAGCGACTGGTGTGTACATGAGAAAGCTATCACGAGAAAGAGGAAAAAT
CGCATTTGGC
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Coding sequence (CDS) from alignment at scaffold_5:1022715..1023624-

>mRNA_2719 ID=mRNA_2719|Name=jgi.p|Nanoce1779_2|581289|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at scaffold_5:1022715..1023624- (Nannochloropsis oceanica)
AATTTCTACCTCCGCACCCTCGGCTTCGAGGACGACACCCACATGCGTCC
ATCCACCCTCCCATTTCCCGGGGCCTTCGTCCGCGGCGGTGCTCAACAAA
TTCATCTCATGGAGCTGCCTAACCCAGACCCGACACGTGGGCGTCCCGAG
CATGGGGGGAGGGATAGACACGTCGCTTTTACTGTCGAAAATATCGAGCC
GCTGCTAGAGAGATTGACCGAGGGGGGGGTACCTTACACCATGAGTAAGT
CAGGCAGACGGGCCGTGTTTTGCCGGGATCCGGATGGGAATGCGCTTGAG
TTCATGGAGGAACGAAGCGTGGGGACGATGAAGGAGGGAGAGAAGGAGGA
ATTGTGAATGGCCACACGTCGCCGCCAGTCCTGCTTTTCCCCCTTGTGCT
TGGCCGCCGCCTTATCTATGGTGCTCGCTTCGACGCACGGCTTTGTCCTG
GTTATTGCCCTCAAGACACCCAAGCCCACCTTTGGCGGCATTGCTCATGC
TGGGATCCTAGTTTCGGATACCCAAGCGTCGCTGAATTTCTACCTCCGCA
CCCTCGGCTTCGAGGACGACACCCACATGCGTCCATCCACCCTCCCATTT
CCCGGGGCCTTCGTCCGCGGCGGTGCTCAACAAATTCATCTCATGGAGCT
GCCTAACCCAGACCCGACACGTGGGCGTCCCGAGCATGGGGGGAGGGATA
GACACGTCGCTTTTACTGTCGAAAATATCGAGCCGCTGCTAGAGAGATTG
ACCGAGGGGGGGGTACCTTACACCATGAGTAAGTCAGGCAGACGGGCCGT
GTTTTGCCGGGATCCGGATGGGAATGCGCTTGAGTTCATGGAGGAACGAA
GCGTGGGGACGATGAAGGAGGGAGAGAAGGAGGAATTGTGAATGGCCACA
CGTCGCCGCCAGTCCTGCTTTTCCCCCTTGTGCTTGGCCGCCGCCTTATC
TATGGTGCTCGCTTCGACGCACGGCTTTGTCCTGGTTATTGCCCTCAAGA
CACCCAAGCCCACCTTTGGCGGCATTGCTCATGCTGGGATCCTAGTTTCG
GATACCCAAGCGTCGCTG
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Synonyms
Publications