jgi.p|Nanoce1779_2|581287, mRNA_2718 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581287
Unique NamemRNA_2718
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length822
Alignment locationscaffold_5:1021634..1022715 +

Link to JBrowse

Properties
Property NameValue
TranscriptId581373
TrackFilteredModels2
ProteinId581287
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1021634..1022715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581287gene_2718Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581287mRNA_2718-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2718CDS_2718Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2718 ID=mRNA_2718|Name=jgi.p|Nanoce1779_2|581287|organism=Nannochloropsis oceanica|type=mRNA|length=822bp
GCGAGCAGACATAAGTCTTCCCTATGGCCTTCCTGGTACGCGGTGGTAGG
GAACGCCTGGTGTCCTGGGTCACACGCAGCAGTCCTCGCCTCCCCTTCCT
CCCTCACAGCTGTCGACCTCCCGTCCCCCTGCCCTCGCCATACCCATGTT
GCAGCCACTACTACCACCGCCAGCTGCGACCCGCCAGCACCAGCAGTGTG
AGCCAAAACTCCACCACTATAAAAAGGGAGGGGAAGACGGCCGAGCACCG
CGTCACACGTGTCGTTCCCTTCACATGCGAACAGCTCTTTGATGTTGTGG
TCGACGTGGACAAGTACAAGCTCTTCCTCCCCTATTGCACCCAGTCTAAA
GTCTTGCGGCGGATCCCTCCCAATTTCATTCTGGCCCAACTCCTCGTCGG
CTTCAACAATGTCCTCAATGAGCGCTACACCTCCCGAATTCGTGTCGAAC
GTCCCAAATCCATTGTCATCGCGGCCTTAGATAGCCATATATTTACACGC
TTGGAAAGCACGTGGCAGTTTCAGCCGGGCCCTGCCGTCGCGGCAGAAAT
GAGCAGCAGCAGCAGCAGCAGCAGCAGCACCCATGTCGATTTCAGAGTCA
GATTCGAGGTGTCAAATCCATTGACGCAGGCGGCAATCGACTTAATCTTC
GCTGATTTGGTCGAGAGGCAGATACACGCATTCGAAGACAGATGTTTTGC
AGTGTATGGGGAAGGGATTGAGGGAGGGAAGATGAGGAAGAAGATAGGAG
AGGAAGAAAAAGAGGCAAGTGCAAGTGACCTTAAACGATAAAAATAAAAT
AACTAAGTTCAATCGAATGGCG
back to top

protein sequence of jgi.p|Nanoce1779_2|581287

>mRNA_2718-protein ID=mRNA_2718-protein|Name=jgi.p|Nanoce1779_2|581287|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MAFLVRGGRERLVSWVTRSSPRLPFLPHSCRPPVPLPSPYPCCSHYYHRQ
LRPASTSSVSQNSTTIKREGKTAEHRVTRVVPFTCEQLFDVVVDVDKYKL
FLPYCTQSKVLRRIPPNFILAQLLVGFNNVLNERYTSRIRVERPKSIVIA
ALDSHIFTRLESTWQFQPGPAVAAEMSSSSSSSSSTHVDFRVRFEVSNPL
TQAAIDLIFADLVERQIHAFEDRCFAVYGEGIEGGKMRKKIGEEEKEASA
SDLKR*
back to top

mRNA from alignment at scaffold_5:1021634..1022715+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2718 ID=mRNA_2718|Name=jgi.p|Nanoce1779_2|581287|organism=Nannochloropsis oceanica|type=mRNA|length=1082bp|location=Sequence derived from alignment at scaffold_5:1021634..1022715+ (Nannochloropsis oceanica)
GCGAGCAGACATAAGTCTTCCCTATGGCCTTCCTGGTACGCGGTGGTAGG
GAACGCCTGGTGTCCTGGGTCACACGCAGCAGTCCTCGCCTCCCCTTCCT
CCCTCACAGCTGTCGACCTCCCGTCCCCCTGCCCTCGCCATACCCATGTT
GCAGCCACTACTACCACCGCCAGCTGCGACCCGCCAGCACCAGCAGTGTG
AGCCAAAACTCCACCACTATAAAAAGGGAGGGGAAGACGGCCGAGCACCG
CGTCACACGTGTCGTTCCCTTCACATGCGAACAGCTCTTTGGTAAGCCTT
CCAATGCGCGGGAGGGTTGCAACGGATGTAGTACCACCAGCTATACCAAC
GCCACCCAAATGTATGCATCACTGACAAACTTCTTTCTCATTTATTTCAT
TTTCAATAGATGTTGTGGTCGACGTGGACAAGTACAAGCTCTTCCTCCCC
TATTGCACCCAGTCTAAAGTCTTGCGGCGGATCCCTCCCAATTTCATTCT
GGTACGTCTCTCCCTTTCGCTTGAATATTCGCGCGGGAGACAAGAAATGC
TGTAAATTTTTTGATACGTGACTTACCTGGGAATTCATCGATCAGCTCCG
AGCACTGCCTCACCCTCCTTCCCTCCCCCATCTCCACCCTCAGGCCCAAC
TCCTCGTCGGCTTCAACAATGTCCTCAATGAGCGCTACACCTCCCGAATT
CGTGTCGAACGTCCCAAATCCATTGTCATCGCGGCCTTAGATAGCCATAT
ATTTACACGCTTGGAAAGCACGTGGCAGTTTCAGCCGGGCCCTGCCGTCG
CGGCAGAAATGAGCAGCAGCAGCAGCAGCAGCAGCAGCACCCATGTCGAT
TTCAGAGTCAGATTCGAGGTGTCAAATCCATTGACGCAGGCGGCAATCGA
CTTAATCTTCGCTGATTTGGTCGAGAGGCAGATACACGCATTCGAAGACA
GATGTTTTGCAGTGTATGGGGAAGGGATTGAGGGAGGGAAGATGAGGAAG
AAGATAGGAGAGGAAGAAAAAGAGGCAAGTGCAAGTGACCTTAAACGATA
AAAATAAAATAACTAAGTTCAATCGAATGGCG
back to top

Coding sequence (CDS) from alignment at scaffold_5:1021634..1022715+

>mRNA_2718 ID=mRNA_2718|Name=jgi.p|Nanoce1779_2|581287|organism=Nannochloropsis oceanica|type=CDS|length=2304bp|location=Sequence derived from alignment at scaffold_5:1021634..1022715+ (Nannochloropsis oceanica)
ATGGCCTTCCTGGTACGCGGTGGTAGGGAACGCCTGGTGTCCTGGGTCAC
ACGCAGCAGTCCTCGCCTCCCCTTCCTCCCTCACAGCTGTCGACCTCCCG
TCCCCCTGCCCTCGCCATACCCATGTTGCAGCCACTACTACCACCGCCAG
CTGCGACCCGCCAGCACCAGCAGTGTGAGCCAAAACTCCACCACTATAAA
AAGGGAGGGGAAGACGGCCGAGCACCGCGTCACACGTGTCGTTCCCTTCA
CATGCGAACAGCTCTTTGATGTTGTGGTCGACGTGGACAAGTACAAGCTC
TTCCTCCCCTATTGCACCCAGTCTAAAGTCTTGCGGCGGATCCCTCCCAA
TTTCATTCTGGCCCAACTCCTCGTCGGCTTCAACAATGTCCTCAATGAGC
GCTACACCTCCCGAATTCGTGTCGAACGTCCCAAATCCATTGTCATCGCG
GCCTTAGATAGCCATATATTTACACGCTTGGAAAGCACGTGGCAGTTTCA
GCCGGGCCCTGCCGTCGCGGCAGAAATGAGCAGCAGCAGCAGCAGCAGCA
GCAGCACCCATGTCGATTTCAGAGTCAGATTCGAGGTGTCAAATCCATTG
ACGCAGGCGGCAATCGACTTAATCTTCGCTGATTTGGTCGAGAGGCAGAT
ACACGCATTCGAAGACAGATGTTTTGCAGTGTATGGGGAAGGGATTGAGG
GAGGGAAGATGAGGAAGAAGATAGGAGAGGAAGAAAAAGAGGCAAGTGCA
AGTGACCTTAAACGATAAATGGCCTTCCTGGTACGCGGTGGTAGGGAACG
CCTGGTGTCCTGGGTCACACGCAGCAGTCCTCGCCTCCCCTTCCTCCCTC
ACAGCTGTCGACCTCCCGTCCCCCTGCCCTCGCCATACCCATGTTGCAGC
CACTACTACCACCGCCAGCTGCGACCCGCCAGCACCAGCAGTGTGAGCCA
AAACTCCACCACTATAAAAAGGGAGGGGAAGACGGCCGAGCACCGCGTCA
CACGTGTCGTTCCCTTCACATGCGAACAGCTCTTTGATGTTGTGGTCGAC
GTGGACAAGTACAAGCTCTTCCTCCCCTATTGCACCCAGTCTAAAGTCTT
GCGGCGGATCCCTCCCAATTTCATTCTGGCCCAACTCCTCGTCGGCTTCA
ACAATGTCCTCAATGAGCGCTACACCTCCCGAATTCGTGTCGAACGTCCC
AAATCCATTGTCATCGCGGCCTTAGATAGCCATATATTTACACGCTTGGA
AAGCACGTGGCAGTTTCAGCCGGGCCCTGCCGTCGCGGCAGAAATGAGCA
GCAGCAGCAGCAGCAGCAGCAGCACCCATGTCGATTTCAGAGTCAGATTC
GAGGTGTCAAATCCATTGACGCAGGCGGCAATCGACTTAATCTTCGCTGA
TTTGGTCGAGAGGCAGATACACGCATTCGAAGACAGATGTTTTGCAGTGT
ATGGGGAAGGGATTGAGGGAGGGAAGATGAGGAAGAAGATAGGAGAGGAA
GAAAAAGAGGCAAGTGCAAGTGACCTTAAACGATAAATGGCCTTCCTGGT
ACGCGGTGGTAGGGAACGCCTGGTGTCCTGGGTCACACGCAGCAGTCCTC
GCCTCCCCTTCCTCCCTCACAGCTGTCGACCTCCCGTCCCCCTGCCCTCG
CCATACCCATGTTGCAGCCACTACTACCACCGCCAGCTGCGACCCGCCAG
CACCAGCAGTGTGAGCCAAAACTCCACCACTATAAAAAGGGAGGGGAAGA
CGGCCGAGCACCGCGTCACACGTGTCGTTCCCTTCACATGCGAACAGCTC
TTTGATGTTGTGGTCGACGTGGACAAGTACAAGCTCTTCCTCCCCTATTG
CACCCAGTCTAAAGTCTTGCGGCGGATCCCTCCCAATTTCATTCTGGCCC
AACTCCTCGTCGGCTTCAACAATGTCCTCAATGAGCGCTACACCTCCCGA
ATTCGTGTCGAACGTCCCAAATCCATTGTCATCGCGGCCTTAGATAGCCA
TATATTTACACGCTTGGAAAGCACGTGGCAGTTTCAGCCGGGCCCTGCCG
TCGCGGCAGAAATGAGCAGCAGCAGCAGCAGCAGCAGCAGCACCCATGTC
GATTTCAGAGTCAGATTCGAGGTGTCAAATCCATTGACGCAGGCGGCAAT
CGACTTAATCTTCGCTGATTTGGTCGAGAGGCAGATACACGCATTCGAAG
ACAGATGTTTTGCAGTGTATGGGGAAGGGATTGAGGGAGGGAAGATGAGG
AAGAAGATAGGAGAGGAAGAAAAAGAGGCAAGTGCAAGTGACCTTAAACG
ATAA
back to top
Synonyms
Publications