jgi.p|Nanoce1779_2|581276, mRNA_2714 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581276
Unique Name	mRNA_2714
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1410
Alignment location	scaffold_5:1008532..1010740 +

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Properties


Property Name	Value
TranscriptId	581362
Track	FilteredModels2
ProteinId	581276

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:1008532..1010740 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581276	gene_2714	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581276	mRNA_2714-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2714	CDS_2714	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:1008532..1010740+
coding sequence from alignment at scaffold_5:1008532..1010740+

mRNA sequence

>mRNA_2714 ID=mRNA_2714|Name=jgi.p|Nanoce1779_2|581276|organism=Nannochloropsis oceanica|type=mRNA|length=1410bp
GGGGAGGAGGGGAGGAGGGGAGGAAGGAGGGAACGATGGAACGAGGGAAG
GAGAGGAAGAGAAAGAGAGAGAGAGAGAGAGAGAGGGAAGGAGAGAGGGG
CGGAGGGAGGGGCGGGGATACCTTCAAGTCCTTCATTCGGTCTCGGAACT
TGGTCAGCAATGCGTCCTTGTCATCCTTCTCCATGCCGAGCTCCTTCTTG
ATGTACTTTAGTTGCTCCATCAGAAAATACTCTCGCTGCTTTTGAGAGAT
TTTCGCTTCAACTTGCTGTTGGATCTCCTGCTGAATTTTGCCCAGCTCGA
GCTCCTTCTTTATGAGAATGAGGGCCTTATTGAGCCGCTTCTCGGCGTCC
AGTTCCTCCAAGACTTCCTGTAACTCCGGCCCCTCGGCCGTGGAGAGGGT
GGCGGCGAAATCCGCGAGCTTGAACGGGTCCACAATGTCGATCTTTTGGG
TGTAGAAATTGAAGTGCTCCTTGAACAGCGGGTTGACTTTCACCAGCTCC
CGGACGGTGGACACCACCTCGTTGCTGTAGGCCTTGATTAGGTTACTCTC
GCTGTCATACGCCTTCCCCTCCAAATGCGACACCTTAACCCGCAACGGCG
GGCCGACTGCGAATGGCCCGTCAATCTTAATCCTACGATGACTGACCAAC
ACCACCTGTCCTCCCATCCCAAGCGGAATAGTGTTCTGAACTTGCGCCAG
TGTGCCCACCGCATAAATCTGTGACATGTCCGTGATGACTTCGGGGGGGC
TACCCTCCAAGGGCTCTTCCTTCCTCATGAAGGTCCCCACATAATAATGA
CCGTAATCGTTCTTAATGCTCGAGATGGCCTCGAACACCTTCGGACTCGT
GATATTCACAGCTTGAACCAACCCTGGGAAAAAAGGACGGCGAAGTATAG
GCAAGGCCAGGACATGTGGGTGCCGGGGCGCATTGTCCCCTGCCCCCACC
TTGGCCACTGCGTCGCTGGGGTGCCCATTGCTGTTGCCATGGCTACTACT
ACAGCTGCTGCCCTTGAGCCCGCGGTTCTCCACCACAACGACGCGCTCTC
CTTCCTTGCTGCTACCGCTGCCATTGCTGCTGCCGCCGCCGCCCTCGCTG
CTGCTAATCCCGCTTCCATTATCCTTGTCCGCCCCTCCTCCTTTGTCTGT
TCCTCCTCCCCTTCCTTTCGCAGCTCCCGCTGCCGATCCTCCTCCGCCTT
CCTTGTTGCCCTTGCCCCACCACGATGATAAACCTCGGACAGGCACGTAA
ATTAGTTGGTAGTTGTAAGGGTCGCGGGCGTGGGCGTAGCTGGCCTCGAC
CAAGCCCTGCAGCAAGGGAGAGGAGGCAAGGACCCGGCTGCTTGACAACG
AGGCTGACATTGCAGCCGCCCCTCGCTGGTGTCGCAGGATGCTCGAAAGC
ATTTTCCTGT

protein sequence of jgi.p|Nanoce1779_2|581276

>mRNA_2714-protein ID=mRNA_2714-protein|Name=jgi.p|Nanoce1779_2|581276|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MTVIVLNARDGLEHLRTRDIHSLNQPWEKRTAKYRQGQDMWVPGRIVPCP
HLGHCVAGVPIAVAMATTTAAALEPAVLHHNDALSFLAATAAIAAAAAAL
AAANPASIILVRPSSFVCSSSPSFRSSRCRSSSAFLVALAPPR*

mRNA from alignment at scaffold_5:1008532..1010740+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2714 ID=mRNA_2714|Name=jgi.p|Nanoce1779_2|581276|organism=Nannochloropsis oceanica|type=mRNA|length=2209bp|location=Sequence derived from alignment at scaffold_5:1008532..1010740+ (Nannochloropsis oceanica)
GGGGAGGAGGGGAGGAGGGGAGGAAGGAGGGAACGATGGAACGAGGGAAG
GAGAGGAAGAGAAAGAGAGAGAGAGAGAGAGAGAGGGAAGGAGAGAGGGG
CGGAGGGAGGGGCGGGGATACCTTCAAGTCCTTCATTCGGTCTCGGAACT
TGGTCAGCAATGCGTCCTTGTCATCCTTCTCCATGCCGAGCTCCTAAAAG
AGAGGGATAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGGGAGGGGGGGA
GGGGGGCATGTTACAAATAGCAAAAGGGGGCGAAAGAGGGAGGGTGGGCG
TGGGTGAGGGCGAGGGCGTGGCATGGAGGACGGGGAGGGAAAAGACGTGT
GGGTGTGGGCGAAGGGAGGGAGGGAAAGGAGGGAAGAGAGGGAATGGAAG
AGGGAGGGAGGGAGGGAGAGAGAGAGGGAGGAAGGGAGGAAGGGCGTACC
TTCTTGATGTACTTTAGTTGCTCCATCAGAAAATACTCTCGCTGCTTTTG
AGAGATTTTCGCTTCAACTTGCTGTAGAAGGGAGGGAGGGTTGGAGGAAG
GGAGGGGAGGGAGGGGAAGTCGGTACTTGAAAGGAGTATGAAACCATGGA
GGGCGGGAGCTGAGCCAAAACCCACAGACGAGACCAACGAGAAGGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGATCTGACCTGTTGGATCTCCTGCTGA
ATTTTGCCCAGCTCGAGCTCCTTCTTTATGAGAATGAGGGCCTTATTGAG
CCGCTTCTCGGCGTCCAGTTCCTCCAAGACTTCCTGCGAAGGGAGGGCGG
GAGGGAGGGAGGGAGTGGAGGAGGGATGGAGGGAGGAAGAGAGGGCGGGA
GGGAGAGAGGGAAGAGACGCCTGTAAGAAACATGCCGACAATTGATATGA
AGTCCTACCCCTCCCCTCGCTCCCTCCCTCCTTCCTATCAATCCCCCCCT
CCTTCCTCCCTCCCTCCCTACCTGTAACTCCGGCCCCTCGGCCGTGGAGA
GGGTGGCGGCGAAATCCGCGAGCTTGAACGGGTCCACAATGTCGATCTTT
TGGGTGTAGAAATTGAAGTGCTCCTTGAACAGCGGGTTGACTTTCACCAG
CTCCCGGACGGTGGACACCACCTGAGTTCAAGACGGAGGAAGGTAGGGAG
GGGAAGGAAGGAAGGAGGGGAGGAAGGAGCGGGGGGGAGTCATGAGTAAA
TGAATGCGGCCTCAGAGGTTGGCTCTATGCTTGCCTACCTCAAGGCAAGC
CACCGACATAAAGCTCCCTCTCCCCCACCCTTCCCTCCCTTCCCGGCCCC
CTTTCCTCCCCCTCACCTCGTTGCTGTAGGCCTTGATTAGGTTACTCTCG
CTGTCATACGCCTTCCCCTCCAAATGCGACACCTTAACCCGCAACGGCGG
GCCGACTGCGAATGGCCCGTCAATCTTAATCCTACGATGACTGACCAACA
CCACCTGTCCTCCCATCCCAAGCGGAATAGTGTTCTGAACTTGCGCCAGT
GTGCCCACCGCATAAATCTGTGACATGTCCGTGATGACTTCGGGGGGGCT
ACCCTCCAAGGGCTCTTCCTTCCTCATGAAGGTCCCCACATAATAATGAC
CGTAATCGTTCTTAATGCTCGAGATGGCCTCGAACACCTTCGGACTCGTG
ATATTCACAGCTTGAACCAACCCTGGGAAAAAAGGACGGCGAAGTATAGG
CAAGGCCAGGACATGTGGGTGCCGGGGCGCATTGTCCCCTGCCCCCACCT
TGGCCACTGCGTCGCTGGGGTGCCCATTGCTGTTGCCATGGCTACTACTA
CAGCTGCTGCCCTTGAGCCCGCGGTTCTCCACCACAACGACGCGCTCTCC
TTCCTTGCTGCTACCGCTGCCATTGCTGCTGCCGCCGCCGCCCTCGCTGC
TGCTAATCCCGCTTCCATTATCCTTGTCCGCCCCTCCTCCTTTGTCTGTT
CCTCCTCCCCTTCCTTTCGCAGCTCCCGCTGCCGATCCTCCTCCGCCTTC
CTTGTTGCCCTTGCCCCACCACGATGATAAACCTCGGACAGGCACGTAAA
TTAGTTGGTAGTTGTAAGGGTCGCGGGCGTGGGCGTAGCTGGCCTCGACC
AAGCCCTGCAGCAAGGGAGAGGAGGCAAGGACCCGGCTGCTTGACAACGA
GGCTGACATTGCAGCCGCCCCTCGCTGGTGTCGCAGGATGCTCGAAAGCA
TTTTCCTGT

Coding sequence (CDS) from alignment at scaffold_5:1008532..1010740+

>mRNA_2714 ID=mRNA_2714|Name=jgi.p|Nanoce1779_2|581276|organism=Nannochloropsis oceanica|type=CDS|length=432bp|location=Sequence derived from alignment at scaffold_5:1008532..1010740+ (Nannochloropsis oceanica)
ATGACCGTAATCGTTCTTAATGCTCGAGATGGCCTCGAACACCTTCGGAC
TCGTGATATTCACAGCTTGAACCAACCCTGGGAAAAAAGGACGGCGAAGT
ATAGGCAAGGCCAGGACATGTGGGTGCCGGGGCGCATTGTCCCCTGCCCC
CACCTTGGCCACTGCGTCGCTGGGGTGCCCATTGCTGTTGCCATGGCTAC
TACTACAGCTGCTGCCCTTGAGCCCGCGGTTCTCCACCACAACGACGCGC
TCTCCTTCCTTGCTGCTACCGCTGCCATTGCTGCTGCCGCCGCCGCCCTC
GCTGCTGCTAATCCCGCTTCCATTATCCTTGTCCGCCCCTCCTCCTTTGT
CTGTTCCTCCTCCCCTTCCTTTCGCAGCTCCCGCTGCCGATCCTCCTCCG
CCTTCCTTGTTGCCCTTGCCCCACCACGATGA

Synonyms

Publications