jgi.p|Nanoce1779_2|337008, mRNA_2711 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|337008
Unique Name	mRNA_2711
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2036
Alignment location	scaffold_5:1001990..1004216 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	337094
Track	FilteredModels2
ProteinId	337008

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:1001990..1004216 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|337008	gene_2711	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|337008	mRNA_2711-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2711	CDS_2711	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:1001990..1004216+
coding sequence from alignment at scaffold_5:1001990..1004216+

mRNA sequence

>mRNA_2711 ID=mRNA_2711|Name=jgi.p|Nanoce1779_2|337008|organism=Nannochloropsis oceanica|type=mRNA|length=2036bp
CCCTCATCGCGGCCGAGACGTCCCTCGTCATACCAGGTGAGTGTCTTTGA
TTCTTGGCATGTTGGAATAGAGGAAAGAATTTAAGTAGAGAGGGAAGAGG
AAACAGAATCTCGATGAAGCCGGCGATAATAGTCAAGGCCTGCTCACCCT
CATATCTCCTCTTCAAATATCCATCCTGCCCTCCCTCTCACCCCGCGTGG
TTGCTCATCCCCCCGTGCCTTTCCTCTCCTGTGTTTGTTGTCTCTTGATC
ATGTGTCCTCACCTCCTCTCTACACCTGCCGCCACATCACAGGCCTCTTC
ATCTCTTACTTCATGATCTGGCACCGCATCCTCCGTCCCCGCAAGCGTCT
TTCGGATATGCTTTTGTCGGACGCGGACAAGCCCACCATTGATGTGATGA
TTCCTTGCTACACAGAGCCTGTAGAAATCATTCGCGACACACTTGTGGCG
GCCTGCGCGATGGACTATCCCGTGAACAAAATGACGGTGAACATCTGCGA
CGATGGGAAGAACCGCGATGAGGTCCGCGCCCTGGTCGACGCTGTGCGGG
AGGAGAATAAGGCGCGTGGAAATCACGTGGTCCTGCGCTACTTCCGCCGT
GTCAAGGAGGCGGGGAAACCACACCACGCCAAGGCCGGAAACTTGAATAA
TGCCATTCTCAATGAAGGGACGACGGGTCAATTCCTCGTCATCTTCGATT
GTGACATGGTGGCGGAGCCCCATTTCTTGGATGCGCTCATTCCTCATTTC
TACATGCGAACCGGCAACGACAAGTACGAAGTGGACCCGAACATTGCTCT
GGTCCAATCTCCGCAGTCGTTCTTCGGCGTGCCGTTGAGCGACCCTCTCG
GGCAGCAATACCGATACTTCTACGGCCCTGTCCTCCAGGGATGGGATGGC
GCCGATTCCGCGCCTTGCTGCGGGACGAACGTGATCTTCTCTCGGGCCTG
CCTCACGTCCATTGGCGGGTTTATCTACGGTTCGGTGACTGAAGATTTCT
TGACGTCGATGTACCTCCACAACGCTGGGTTCAAGAGCAAGTACGTCCAT
GAATACCTGGCCCGAGGCCTGTCTCCTGAGTCTCTGCATGACTTTATGAA
GCAACGATTGCGATGGGCGGGGGGAGCGGTGGAGATCTTCTTTTACCACA
ATTCTATTTGGCGGCAGGGATTGACCATTAAACAGAAATATCTGTATTTT
TGGGCCGGTCTGCAGGCGCTCCTGAGCTTCCCGTTGTTGCTTGTGTGTAT
CGTTCCCTTCGTTGCCTTGGGGAACCCACACATTTTGGTGGCGCCGGTGG
ATGCGGGGGAGTACTTGTACTTTATGGGTGCCTTCATGACGTTCACGGTT
TGGATGTTGATAGTCAGCTACCGGGATGTGCCCAAGCTGTACCTGATGCG
CTCCGTGCAGGAGTCCGTGTTTATGTTGTTTTGCAAGATGGACGCCGTAT
TCAAGGTGCTTCGGCATGGGAGGATGGTATTTGCTGTCACCAACAAGGAT
GTCCACGTGGGTCAGCTTCGAAAGGAATTTGGCCACGTGATTCCTCATAT
TTTATATTACATTCTCTCCGCCCTCTGTGTGGCTCGTGTGGCCTATAACT
CGACCTTGCCGAATTTCACCACGGAGAAGCTTTTGGGACAAGCTGTGAGT
TGTATTTGGATTGCGGTAGTGCTTTGGCAGTTGTACCCCCCTATTGGTAT
GGTGTTTGGGGAGTTCTTTGATTCTCTGAAGAATCCGGGAGGTAAGACGG
TGCCTGTCATGGCGGACGATGGGTCTGACCCCCGCGTGGTCCCTGTGACG
CCTAAATTGCCCAGCAGTCCTTAAATGGGAAAGAAAGGATGAGAAAGGAG
AAAGGACATCTAGATAACCGGCATATCACGGTGGTGTATTAGTGTAGAAT
AGTGAAGAGAAGACTTGGGAAAATGTGTAGGAAAGGTTGTTTCTGTGTAT
GTGGGTTGGGATGGGTGGCTGTTTGAGAAGGAACAGCGGGCAGGGCGATG
TAGTGCTGAACGGGCACGGAACCACTGAGACTGAAG

protein sequence of jgi.p|Nanoce1779_2|337008

>mRNA_2711-protein ID=mRNA_2711-protein|Name=jgi.p|Nanoce1779_2|337008|organism=Nannochloropsis oceanica|type=polypeptide|length=504bp
MIWHRILRPRKRLSDMLLSDADKPTIDVMIPCYTEPVEIIRDTLVAACAM
DYPVNKMTVNICDDGKNRDEVRALVDAVREENKARGNHVVLRYFRRVKEA
GKPHHAKAGNLNNAILNEGTTGQFLVIFDCDMVAEPHFLDALIPHFYMRT
GNDKYEVDPNIALVQSPQSFFGVPLSDPLGQQYRYFYGPVLQGWDGADSA
PCCGTNVIFSRACLTSIGGFIYGSVTEDFLTSMYLHNAGFKSKYVHEYLA
RGLSPESLHDFMKQRLRWAGGAVEIFFYHNSIWRQGLTIKQKYLYFWAGL
QALLSFPLLLVCIVPFVALGNPHILVAPVDAGEYLYFMGAFMTFTVWMLI
VSYRDVPKLYLMRSVQESVFMLFCKMDAVFKVLRHGRMVFAVTNKDVHVG
QLRKEFGHVIPHILYYILSALCVARVAYNSTLPNFTTEKLLGQAVSCIWI
AVVLWQLYPPIGMVFGEFFDSLKNPGGKTVPVMADDGSDPRVVPVTPKLP
SSP*

mRNA from alignment at scaffold_5:1001990..1004216+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2711 ID=mRNA_2711|Name=jgi.p|Nanoce1779_2|337008|organism=Nannochloropsis oceanica|type=mRNA|length=2227bp|location=Sequence derived from alignment at scaffold_5:1001990..1004216+ (Nannochloropsis oceanica)
CCCTCATCGCGGCCGAGACGTCCCTCGTCATACCAGGTGAGTGTCTTTGA
TTCTTGGCATGTTGGAATAGAGGAAAGAATTTAAGTAGAGAGGGAAGAGG
AAACAGAATCTCGATGAAGCCGGCGATAATAGTCAAGGCCTGCTCACCCT
CATATCTCCTCTTCAAATATCCATCCTGCCCTCCCTCTCACCCCGCGTGG
TTGCTCATCCCCCCGTGCCTTTCCTCTCCTGTGTTTGTTGTCTCTTGATC
ATGTGTCCTCACCTCCTCTCTACACCTGCCGCCACATCACAGGCCTCTTC
ATCTCTTACTTCATGATCTGGCACCGCATCCTCCGTCCCCGCAAGCGTCT
TTCGGATATGCTTTTGTCGGACGCGGACAAGCCCACCATTGATGTGATGA
TTCCTTGCTACACAGAGCCTGTAGAAATCATTCGCGACACACTTGTGGCG
GCCTGCGCGATGGACTATCCCGTGAACAAAATGACGGTGAACATCTGCGA
CGATGGGAAGAACCGCGATGAGGTCCGCGCCCTGGTCGACGCTGTGCGGG
AGGAGAATAAGGCGCGTGGAAATCACGTGGTCCTGCGCTACTTCCGCCGT
GTCAAGGAGGCGGGGAAACCACACCACGCCAAGGCCGGAAACTTGAATAA
TGCCATTCTCAATGAAGGGACGACGGGTCAATTCCTCGTCATCTTCGATT
GTGACATGGTGGCGGAGCCCCATTTCTTGGATGCGCTCATTCCTCATTTC
TACATGCGAGTAAGTTGGTGGACTTCTCAGGGTGGAAAGAGAAACAAATA
AAGGAACAGAGGGAGGGATGGAATAAGAGAGAGAGAGATGGATGTACGTA
CATCTTTGTCTGATTGTATTTTTCTGAAAACTACATTCCATCCAAAAATT
CATCCTCACCCCCCTCCCTCCCTCCCTCCCTCTCTTCCTCCCTCTCTTAG
ACCGGCAACGACAAGTACGAAGTGGACCCGAACATTGCTCTGGTCCAATC
TCCGCAGTCGTTCTTCGGCGTGCCGTTGAGCGACCCTCTCGGGCAGCAAT
ACCGATACTTCTACGGCCCTGTCCTCCAGGGATGGGATGGCGCCGATTCC
GCGCCTTGCTGCGGGACGAACGTGATCTTCTCTCGGGCCTGCCTCACGTC
CATTGGCGGGTTTATCTACGGTTCGGTGACTGAAGATTTCTTGACGTCGA
TGTACCTCCACAACGCTGGGTTCAAGAGCAAGTACGTCCATGAATACCTG
GCCCGAGGCCTGTCTCCTGAGTCTCTGCATGACTTTATGAAGCAACGATT
GCGATGGGCGGGGGGAGCGGTGGAGATCTTCTTTTACCACAATTCTATTT
GGCGGCAGGGATTGACCATTAAACAGAAATATCTGTATTTTTGGGCCGGT
CTGCAGGCGCTCCTGAGCTTCCCGTTGTTGCTTGTGTGTATCGTTCCCTT
CGTTGCCTTGGGGAACCCACACATTTTGGTGGCGCCGGTGGATGCGGGGG
AGTACTTGTACTTTATGGGTGCCTTCATGACGTTCACGGTTTGGATGTTG
ATAGTCAGCTACCGGGATGTGCCCAAGCTGTACCTGATGCGCTCCGTGCA
GGAGTCCGTGTTTATGTTGTTTTGCAAGATGGACGCCGTATTCAAGGTGC
TTCGGCATGGGAGGATGGTATTTGCTGTCACCAACAAGGATGTCCACGTG
GGTCAGCTTCGAAAGGAATTTGGCCACGTGATTCCTCATATTTTATATTA
CATTCTCTCCGCCCTCTGTGTGGCTCGTGTGGCCTATAACTCGACCTTGC
CGAATTTCACCACGGAGAAGCTTTTGGGACAAGCTGTGAGTTGTATTTGG
ATTGCGGTAGTGCTTTGGCAGTTGTACCCCCCTATTGGTATGGTGTTTGG
GGAGTTCTTTGATTCTCTGAAGAATCCGGGAGGTAAGACGGTGCCTGTCA
TGGCGGACGATGGGTCTGACCCCCGCGTGGTCCCTGTGACGCCTAAATTG
CCCAGCAGTCCTTAAATGGGAAAGAAAGGATGAGAAAGGAGAAAGGACAT
CTAGATAACCGGCATATCACGGTGGTGTATTAGTGTAGAATAGTGAAGAG
AAGACTTGGGAAAATGTGTAGGAAAGGTTGTTTCTGTGTATGTGGGTTGG
GATGGGTGGCTGTTTGAGAAGGAACAGCGGGCAGGGCGATGTAGTGCTGA
ACGGGCACGGAACCACTGAGACTGAAG

Coding sequence (CDS) from alignment at scaffold_5:1001990..1004216+

>mRNA_2711 ID=mRNA_2711|Name=jgi.p|Nanoce1779_2|337008|organism=Nannochloropsis oceanica|type=CDS|length=3024bp|location=Sequence derived from alignment at scaffold_5:1001990..1004216+ (Nannochloropsis oceanica)
ATGATCTGGCACCGCATCCTCCGTCCCCGCAAGCGTCTTTCGGATATGCT
TTTGTCGGACGCGGACAAGCCCACCATTGATGTGATGATTCCTTGCTACA
CAGAGCCTGTAGAAATCATTCGCGACACACTTGTGGCGGCCTGCGCGATG
GACTATCCCGTGAACAAAATGACGGTGAACATCTGCGACGATGGGAAGAA
CCGCGATGAGGTCCGCGCCCTGGTCGACGCTGTGCGGGAGGAGAATAAGG
CGCGTGGAAATCACGTGGTCCTGCGCTACTTCCGCCGTGTCAAGGAGGCG
GGGAAACCACACCACGCCAAGGCCGGAAACTTGAATAATGCCATTCTCAA
TGAAGGGACGACGGGTCAATTCCTCGTCATCTTCGATTGTGACATGGTGG
CGGAGCCCCATTTCTTGGATGCGCTCATTCCTCATTTCTACATGCGAACC
GGCAACGACAAGTACGAAGTGGACCCGAACATTGCTCTGGTCCAATCTCC
GCAGTCGTTCTTCGGCGTGCCGTTGAGCGACCCTCTCGGGCAGCAATACC
GATACTTCTACGGCCCTGTCCTCCAGGGATGGGATGGCGCCGATTCCGCG
CCTTGCTGCGGGACGAACGTGATCTTCTCTCGGGCCTGCCTCACGTCCAT
TGGCGGGTTTATCTACGGTTCGGTGACTGAAGATTTCTTGACGTCGATGT
ACCTCCACAACGCTGGGTTCAAGAGCAAGTACGTCCATGAATACCTGGCC
CGAGGCCTGTCTCCTGAGTCTCTGCATGACTTTATGAAGCAACGATTGCG
ATGGGCGGGGGGAGCGGTGGAGATCTTCTTTTACCACAATTCTATTTGGC
GGCAGGGATTGACCATTAAACAGAAATATCTGTATTTTTGGGCCGGTCTG
CAGGCGCTCCTGAGCTTCCCGTTGTTGCTTGTGTGTATCGTTCCCTTCGT
TGCCTTGGGGAACCCACACATTTTGGTGGCGCCGGTGGATGCGGGGGAGT
ACTTGTACTTTATGGGTGCCTTCATGACGTTCACGGTTTGGATGTTGATA
GTCAGCTACCGGGATGTGCCCAAGCTGTACCTGATGCGCTCCGTGCAGGA
GTCCGTGTTTATGTTGTTTTGCAAGATGGACGCCGTATTCAAGGTGCTTC
GGCATGGGAGGATGGTATTTGCTGTCACCAACAAGGATGTCCACGTGGGT
CAGCTTCGAAAGGAATTTGGCCACGTGATTCCTCATATTTTATATTACAT
TCTCTCCGCCCTCTGTGTGGCTCGTGTGGCCTATAACTCGACCTTGCCGA
ATTTCACCACGGAGAAGCTTTTGGGACAAGCTGTGAGTTGTATTTGGATT
GCGGTAGTGCTTTGGCAGTTGTACCCCCCTATTGGTATGGTGTTTGGGGA
GTTCTTTGATTCTCTGAAGAATCCGGGAGGTAAGACGGTGCCTGTCATGG
CGGACGATGGGTCTGACCCCCGCGTGGTCCCTGTGACGCCTAAATTGCCC
AGCAGTCCTTAAATGATCTGGCACCGCATCCTCCGTCCCCGCAAGCGTCT
TTCGGATATGCTTTTGTCGGACGCGGACAAGCCCACCATTGATGTGATGA
TTCCTTGCTACACAGAGCCTGTAGAAATCATTCGCGACACACTTGTGGCG
GCCTGCGCGATGGACTATCCCGTGAACAAAATGACGGTGAACATCTGCGA
CGATGGGAAGAACCGCGATGAGGTCCGCGCCCTGGTCGACGCTGTGCGGG
AGGAGAATAAGGCGCGTGGAAATCACGTGGTCCTGCGCTACTTCCGCCGT
GTCAAGGAGGCGGGGAAACCACACCACGCCAAGGCCGGAAACTTGAATAA
TGCCATTCTCAATGAAGGGACGACGGGTCAATTCCTCGTCATCTTCGATT
GTGACATGGTGGCGGAGCCCCATTTCTTGGATGCGCTCATTCCTCATTTC
TACATGCGAACCGGCAACGACAAGTACGAAGTGGACCCGAACATTGCTCT
GGTCCAATCTCCGCAGTCGTTCTTCGGCGTGCCGTTGAGCGACCCTCTCG
GGCAGCAATACCGATACTTCTACGGCCCTGTCCTCCAGGGATGGGATGGC
GCCGATTCCGCGCCTTGCTGCGGGACGAACGTGATCTTCTCTCGGGCCTG
CCTCACGTCCATTGGCGGGTTTATCTACGGTTCGGTGACTGAAGATTTCT
TGACGTCGATGTACCTCCACAACGCTGGGTTCAAGAGCAAGTACGTCCAT
GAATACCTGGCCCGAGGCCTGTCTCCTGAGTCTCTGCATGACTTTATGAA
GCAACGATTGCGATGGGCGGGGGGAGCGGTGGAGATCTTCTTTTACCACA
ATTCTATTTGGCGGCAGGGATTGACCATTAAACAGAAATATCTGTATTTT
TGGGCCGGTCTGCAGGCGCTCCTGAGCTTCCCGTTGTTGCTTGTGTGTAT
CGTTCCCTTCGTTGCCTTGGGGAACCCACACATTTTGGTGGCGCCGGTGG
ATGCGGGGGAGTACTTGTACTTTATGGGTGCCTTCATGACGTTCACGGTT
TGGATGTTGATAGTCAGCTACCGGGATGTGCCCAAGCTGTACCTGATGCG
CTCCGTGCAGGAGTCCGTGTTTATGTTGTTTTGCAAGATGGACGCCGTAT
TCAAGGTGCTTCGGCATGGGAGGATGGTATTTGCTGTCACCAACAAGGAT
GTCCACGTGGGTCAGCTTCGAAAGGAATTTGGCCACGTGATTCCTCATAT
TTTATATTACATTCTCTCCGCCCTCTGTGTGGCTCGTGTGGCCTATAACT
CGACCTTGCCGAATTTCACCACGGAGAAGCTTTTGGGACAAGCTGTGAGT
TGTATTTGGATTGCGGTAGTGCTTTGGCAGTTGTACCCCCCTATTGGTAT
GGTGTTTGGGGAGTTCTTTGATTCTCTGAAGAATCCGGGAGGTAAGACGG
TGCCTGTCATGGCGGACGATGGGTCTGACCCCCGCGTGGTCCCTGTGACG
CCTAAATTGCCCAGCAGTCCTTAA

Synonyms

Publications