jgi.p|Nanoce1779_2|581263, mRNA_2709 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581263
Unique Name	mRNA_2709
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1295
Alignment location	scaffold_5:996977..998271 -

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Properties


Property Name	Value
TranscriptId	581349
Track	FilteredModels2
ProteinId	581263

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:996977..998271 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581263	gene_2709	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581263	mRNA_2709-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2709	CDS_2709	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:996977..998271-
coding sequence from alignment at scaffold_5:996977..998271-

mRNA sequence

>mRNA_2709 ID=mRNA_2709|Name=jgi.p|Nanoce1779_2|581263|organism=Nannochloropsis oceanica|type=mRNA|length=1295bp
TTTATATTTTGCTGTATTTCATTTCTTTCTACTTTCTCCTGACTCTCGTA
TCGATTCTTTCCTTCTTGTTTGGTTCAGTTGGTCCCCTCCCATCTCTCTC
GCCCTGTTTCTTTTTTGCTTGCCAGGTCATCCAAATGAAGCCCAGAGAGG
AGTGAATGTTTCCATAAAAAAGCATCAGACCCTTGAAGGAGGGTGAAGCA
ATGGTTCGTGTGCACATATGTAACTCTCAAGGAATCCTATTTCTGGGACG
ATAAGGCACCCAGATGACAGCCGGGTGTACGTATCGCACCACTCTCCCGC
TTCACATTCCTCCTTGCCTCTGTTCCCCTTGCCCTTGCCTGTCTATTAAG
CATTCTCTCAGCTTCTTCTCCTACCCTGCTCCACATGATGACAGCACAAC
AGGTACAAAGTCACACGCGCTTTTCCTCTCCCATGAACTCAATTGCCAAT
CCTCTTGTTGTCTCTCACATTCACACTTTCTCTTTTTCTTTCCTATCGAT
AGCGACCTTCTCACAGATGATGTAGTATGTGTATGTAGAAATGAATACGA
AAAAATGATGAATTTAATAATAATTAAGGGTGGTACTCAATATCTGCGCT
TGTCGATCTCTCCCTCTCTCATCCTCCTGCTCCTGCTCCTGCTCCTCCTC
CTCTTGCTGGGAATCACCCAAAGTCTTCCTACAACATCACATGCAGACAT
TTACATACACAAGCCAAAAATGACGACCTACATCCCAACGCCGCCATTGC
GCCGCTACTTCTTGCGCCACCACCACACTTTCTGATACTTGTTCGATCGT
TTGCGTCTCGAAAGGAGACGCTCAACCACAACACGCACGATTGATTCCTC
TCTTTATCCTTCCACTTCCAAGCAATGGTGCCAGCCACCACCCCCATCAT
TGCCTCCCTCCTTCTTTCCCTTCCTGCCTTTTGCCCTCTCCGCTATTTAA
ACACACCTGTGGTTTAAAATTGATTAAATTTCCCCCCTCGCTGCTGCTTG
CACAATCACACACACACACAGACTCACACACTCGTGCACATGCTGTTCTT
TTTGTTTTTTGATTTTAGTTTCCATACGGTGACGACGGCTACTGTTACTA
ACTAAAGAGGAATGCCCTCTTCCCCTCCTCCTCCCCGTCCTCGTTCTCCT
CCTCCTTTCACACCCTACATACACCTTCCAGCCCTCTTCACCACTCCCTC
CCTCCCTCTACAAAGACGCGGCACGCCGAATCATCATTTTCATGACCACA
CCAGCCACAAAACCATCATCCCTCCTCCCCCCCCCCCCCCCCCCC

protein sequence of jgi.p|Nanoce1779_2|581263

>mRNA_2709-protein ID=mRNA_2709-protein|Name=jgi.p|Nanoce1779_2|581263|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MTAGCTYRTTLPLHIPPCLCSPCPCLSIKHSLSFFSYPAPHDDSTTGTKS
HALFLSHELNCQSSCCLSHSHFLFFFPIDSDLLTDDVVCVCRNEYEKMMN
LIIIKGGTQYLRLSISPSLILLLLLLLLLLLLGITQSLPTTSHADIYIHK
PKMTTYIPTPPLRRYFLRHHHTF*

mRNA from alignment at scaffold_5:996977..998271-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2709 ID=mRNA_2709|Name=jgi.p|Nanoce1779_2|581263|organism=Nannochloropsis oceanica|type=mRNA|length=1295bp|location=Sequence derived from alignment at scaffold_5:996977..998271- (Nannochloropsis oceanica)
TTTATATTTTGCTGTATTTCATTTCTTTCTACTTTCTCCTGACTCTCGTA
TCGATTCTTTCCTTCTTGTTTGGTTCAGTTGGTCCCCTCCCATCTCTCTC
GCCCTGTTTCTTTTTTGCTTGCCAGGTCATCCAAATGAAGCCCAGAGAGG
AGTGAATGTTTCCATAAAAAAGCATCAGACCCTTGAAGGAGGGTGAAGCA
ATGGTTCGTGTGCACATATGTAACTCTCAAGGAATCCTATTTCTGGGACG
ATAAGGCACCCAGATGACAGCCGGGTGTACGTATCGCACCACTCTCCCGC
TTCACATTCCTCCTTGCCTCTGTTCCCCTTGCCCTTGCCTGTCTATTAAG
CATTCTCTCAGCTTCTTCTCCTACCCTGCTCCACATGATGACAGCACAAC
AGGTACAAAGTCACACGCGCTTTTCCTCTCCCATGAACTCAATTGCCAAT
CCTCTTGTTGTCTCTCACATTCACACTTTCTCTTTTTCTTTCCTATCGAT
AGCGACCTTCTCACAGATGATGTAGTATGTGTATGTAGAAATGAATACGA
AAAAATGATGAATTTAATAATAATTAAGGGTGGTACTCAATATCTGCGCT
TGTCGATCTCTCCCTCTCTCATCCTCCTGCTCCTGCTCCTGCTCCTCCTC
CTCTTGCTGGGAATCACCCAAAGTCTTCCTACAACATCACATGCAGACAT
TTACATACACAAGCCAAAAATGACGACCTACATCCCAACGCCGCCATTGC
GCCGCTACTTCTTGCGCCACCACCACACTTTCTGATACTTGTTCGATCGT
TTGCGTCTCGAAAGGAGACGCTCAACCACAACACGCACGATTGATTCCTC
TCTTTATCCTTCCACTTCCAAGCAATGGTGCCAGCCACCACCCCCATCAT
TGCCTCCCTCCTTCTTTCCCTTCCTGCCTTTTGCCCTCTCCGCTATTTAA
ACACACCTGTGGTTTAAAATTGATTAAATTTCCCCCCTCGCTGCTGCTTG
CACAATCACACACACACACAGACTCACACACTCGTGCACATGCTGTTCTT
TTTGTTTTTTGATTTTAGTTTCCATACGGTGACGACGGCTACTGTTACTA
ACTAAAGAGGAATGCCCTCTTCCCCTCCTCCTCCCCGTCCTCGTTCTCCT
CCTCCTTTCACACCCTACATACACCTTCCAGCCCTCTTCACCACTCCCTC
CCTCCCTCTACAAAGACGCGGCACGCCGAATCATCATTTTCATGACCACA
CCAGCCACAAAACCATCATCCCTCCTCCCCCCCCCCCCCCCCCCC

Coding sequence (CDS) from alignment at scaffold_5:996977..998271-

>mRNA_2709 ID=mRNA_2709|Name=jgi.p|Nanoce1779_2|581263|organism=Nannochloropsis oceanica|type=CDS|length=522bp|location=Sequence derived from alignment at scaffold_5:996977..998271- (Nannochloropsis oceanica)
ATGACAGCCGGGTGTACGTATCGCACCACTCTCCCGCTTCACATTCCTCC
TTGCCTCTGTTCCCCTTGCCCTTGCCTGTCTATTAAGCATTCTCTCAGCT
TCTTCTCCTACCCTGCTCCACATGATGACAGCACAACAGGTACAAAGTCA
CACGCGCTTTTCCTCTCCCATGAACTCAATTGCCAATCCTCTTGTTGTCT
CTCACATTCACACTTTCTCTTTTTCTTTCCTATCGATAGCGACCTTCTCA
CAGATGATGTAGTATGTGTATGTAGAAATGAATACGAAAAAATGATGAAT
TTAATAATAATTAAGGGTGGTACTCAATATCTGCGCTTGTCGATCTCTCC
CTCTCTCATCCTCCTGCTCCTGCTCCTGCTCCTCCTCCTCTTGCTGGGAA
TCACCCAAAGTCTTCCTACAACATCACATGCAGACATTTACATACACAAG
CCAAAAATGACGACCTACATCCCAACGCCGCCATTGCGCCGCTACTTCTT
GCGCCACCACCACACTTTCTGA

Synonyms

Publications