|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 581338 |
| Track | FilteredModels2 |
| ProteinId | 581252 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:985933..987899 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2706 ID=mRNA_2706|Name=jgi.p|Nanoce1779_2|581252|organism=Nannochloropsis oceanica|type=mRNA|length=1762bp
ACAGCTATACGAGGGTTGTTACGACAAGATCTAATCGCGTGCCAACATTC
AGATCCCTGGGCCAGCAAGCAAGCGAAGGAAATCGCCATCTATTAGCTAC
CTCCTACCCCACCCACCGCACTACACATCTCTCAAGAAACATGAGGCTGA
GCGGCGCAGGCGTGAAGCGCTTCTGCAATCCTGTCAAGTTAACTTTTACT
GAATGGGGGAACTGGGAGCCTGTTATTCTGGAGGCGGTGGGGAAAAGGAA
GGCATTGCTAATGACGTATCCGCAAGCTGAGGCCTCAGATGGTCTCTTTT
CCAACCTTCGCGCCGTCCTCGGCGAGGACAAGATGCTGTGGGTCGCATGC
CCGGAGCTTCCTGACATGAATGAACACAGAGGGCTGCACCGTCGGATACG
GAATTTTGTGCGGGATAGGGATGATTTCGTGATTGTAGCTGTAGGAGGGG
GCAGTGTGTTGGACTTGGCGAAGGTCATGAGTCTTGCACGGAGCCAGATG
GATTTTGAGGATGTCTTCACGGAGCGCATCGCAAGGGGGAAGAGGATTGA
TAAATTGCGGCACGTGCCTGTGATTGCCGTACCCACGACAGCGGGGACAG
GATCGGAAGTCACTCCCTGGGCGGCCGTGTGGGACACCAAGAAGAAGAAG
AAGTGGTCGGTGCAAGGGCATAGCCTGTGGCCGGAGGCTGCCATATTAGA
TCCCTCTCTCTCTGCGTCCTGCCCGAGGGAGGTCACGAGAAACAGCGCGC
TGGACGCCCTGAGCCATTCCCTTGAAGCCCTGTGGAACGTGAATCACAAC
CCAATCTCCGATGTTTTGGCCGTGGCTGCCGCGAAGGGAATCATGGCCCA
CTTGCCCACCATCCTCTCGCAAGACGAGCGTGATGGCAGCGATTGCGACC
GGGAAATCGTCCAAGCACGCATCGGCCTCTCCACAGCCTCCCTCCGCGCA
GGTCTCGCTTTCAGTAACACCGAAACTGCGCTTGCGCACGCCATCTCCTA
CCAAATTACGATCGAACAAGGCGTGAAGCACGGAGCAGCTTGCTCTTTCT
CCCTTCCCAGAGTGATGCAAATGGCACTGGGGCAGCAAGACCCGAGTCGG
GACGCATTACTTCACGATATTTTTTCGGACATGAAAGTGGCCGATGCGCT
GGCTGGAAGAAGTGTCAGGCAGCCGTATGAGTATCTAGAGAGATTTTTGA
ATGAAGAAGCAGGGGTATCCACAGCGCTAGAGGACTATGGTATTGCGGGC
GAGAAGGACTTTTCGGAGCGAGTGAGGGAGGCTTTATGGCATCGGAGGGG
GAGGAACTTCTTGTTGGCGGCTCATTTGAAGCGGTAGTGTGAGGGGGAGG
GGGGGAGGAAGACGGCGAGGCATGTGCAGTTTTGTATGAGAGAAGTAGAA
GTGTGGAGGGGGGAGGAGGAATGACGGAGGTGTTGATATGACGGCCATCT
TCTGGCTCGCGATTTGTGAAAGAGTAATAGAATGAGTGGTCAAATTAGAG
AAGAAGAAGGAGAAGGAGGAGTTGATGGAGAAGAAGAAGAAGAAAAAGAT
GTAGGCGAAGAAAAAGGACGGGAAGAAACAGAGAGAGACGGAGAATGTAA
CAGAAAGAGATGATGAAGTATGAAAAAGGAGACAGAAAGAAAGAAGATCA
GGATGGAAGACGAGTGAGAAAGAAGGAGGCAGAAGAAAAATGGTAAGCAA
AATAAAAATTATGATGAGAATTATGATGATGGTGATGGTAATATGAAAAT
GATGATAGCAGT back to topprotein sequence of jgi.p|Nanoce1779_2|581252 >mRNA_2706-protein ID=mRNA_2706-protein|Name=jgi.p|Nanoce1779_2|581252|organism=Nannochloropsis oceanica|type=polypeptide|length=399bp
MRLSGAGVKRFCNPVKLTFTEWGNWEPVILEAVGKRKALLMTYPQAEASD
GLFSNLRAVLGEDKMLWVACPELPDMNEHRGLHRRIRNFVRDRDDFVIVA
VGGGSVLDLAKVMSLARSQMDFEDVFTERIARGKRIDKLRHVPVIAVPTT
AGTGSEVTPWAAVWDTKKKKKWSVQGHSLWPEAAILDPSLSASCPREVTR
NSALDALSHSLEALWNVNHNPISDVLAVAAAKGIMAHLPTILSQDERDGS
DCDREIVQARIGLSTASLRAGLAFSNTETALAHAISYQITIEQGVKHGAA
CSFSLPRVMQMALGQQDPSRDALLHDIFSDMKVADALAGRSVRQPYEYLE
RFLNEEAGVSTALEDYGIAGEKDFSERVREALWHRRGRNFLLAAHLKR* back to topmRNA from alignment at scaffold_5:985933..987899- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2706 ID=mRNA_2706|Name=jgi.p|Nanoce1779_2|581252|organism=Nannochloropsis oceanica|type=mRNA|length=1967bp|location=Sequence derived from alignment at scaffold_5:985933..987899- (Nannochloropsis oceanica)
ACAGCTATACGAGGGTTGTTACGACAAGATCTAATCGCGTGCCAACATTC
AGATCCCTGGGCCAGCAAGCAAGCGAAGGAAATCGCCATCTATTAGCTAC
CTCCTACCCCACCCACCGCACTACACATCTCTCAAGAAACATGAGGCTGA
GCGGCGCAGGCGTGAAGCGCTTCTGCAATCCTGTCAAGTTAACTTTTACT
GAATGGGGGAACTGGGAGCCTGTTATTCTGGAGGCGGTGGGGAAAAGGAA
GGCATTGCTAATGACGGTGAGGGGAGCGAGGGAGTTTACCCGACATTTAG
GTATGTGTAGCACTCCACTCACAAATTTATTCACACGTATGTCTAACACA
TAATAGTATCCGCAAGCTGAGGCCTCAGATGGTCTCTTTTCCAACCTTCG
CGCCGTCCTCGGCGAGGACAAGATGCTGTGGGTCGCATGCCCGGAGCTTC
CTGACATGAATGAACACAGAGGGCTGCACCGTCGGATACGGAATTTTGTG
CGGGATAGGGATGATTTCGTGATTGTAGCTGTAGGAGGGGGCAGTGTGTT
GGACTTGGCGAAGGTCATGAGTCTTGCACGGAGCCAGATGGATTTTGAGG
ATGTCTTCACGGAGCGCATCGCAAGGGGGAAGAGGATTGATAAATTGCGG
CACGTGCCTGTGATTGCCGTACCCACGACAGGTCCGTTTATGCTTGTGAC
ATCATCCAAGAGCAACATAGATGGCTCCCTCCTCGTTTCCATTTAAAAAC
ATCTTCCTCGCATTCCTTATTTCTTTCAACCTTCACCTTGCCACAGCGGG
GACAGGATCGGAAGTCACTCCCTGGGCGGCCGTGTGGGACACCAAGAAGA
AGAAGAAGTGGTCGGTGCAAGGGCATAGCCTGTGGCCGGAGGCTGCCATA
TTAGATCCCTCTCTCTCTGCGTCCTGCCCGAGGGAGGTCACGAGAAACAG
CGCGCTGGACGCCCTGAGCCATTCCCTTGAAGCCCTGTGGAACGTGAATC
ACAACCCAATCTCCGATGTTTTGGCCGTGGCTGCCGCGAAGGGAATCATG
GCCCACTTGCCCACCATCCTCTCGCAAGACGAGCGTGATGGCAGCGATTG
CGACCGGGAAATCGTCCAAGCACGCATCGGCCTCTCCACAGCCTCCCTCC
GCGCAGGTCTCGCTTTCAGTAACACCGAAACTGCGCTTGCGCACGCCATC
TCCTACCAAATTACGATCGAACAAGGCGTGAAGCACGGAGCAGCTTGCTC
TTTCTCCCTTCCCAGAGTGATGCAAATGGCACTGGGGCAGCAAGACCCGA
GTCGGGACGCATTACTTCACGATATTTTTTCGGACATGAAAGTGGCCGAT
GCGCTGGCTGGAAGAAGTGTCAGGCAGCCGTATGAGTATCTAGAGAGATT
TTTGAATGAAGAAGCAGGGGTATCCACAGCGCTAGAGGACTATGGTATTG
CGGGCGAGAAGGACTTTTCGGAGCGAGTGAGGGAGGCTTTATGGCATCGG
AGGGGGAGGAACTTCTTGTTGGCGGCTCATTTGAAGCGGTAGTGTGAGGG
GGAGGGGGGGAGGAAGACGGCGAGGCATGTGCAGTTTTGTATGAGAGAAG
TAGAAGTGTGGAGGGGGGAGGAGGAATGACGGAGGTGTTGATATGACGGC
CATCTTCTGGCTCGCGATTTGTGAAAGAGTAATAGAATGAGTGGTCAAAT
TAGAGAAGAAGAAGGAGAAGGAGGAGTTGATGGAGAAGAAGAAGAAGAAA
AAGATGTAGGCGAAGAAAAAGGACGGGAAGAAACAGAGAGAGACGGAGAA
TGTAACAGAAAGAGATGATGAAGTATGAAAAAGGAGACAGAAAGAAAGAA
GATCAGGATGGAAGACGAGTGAGAAAGAAGGAGGCAGAAGAAAAATGGTA
AGCAAAATAAAAATTATGATGAGAATTATGATGATGGTGATGGTAATATG
AAAATGATGATAGCAGT back to topCoding sequence (CDS) from alignment at scaffold_5:985933..987899- >mRNA_2706 ID=mRNA_2706|Name=jgi.p|Nanoce1779_2|581252|organism=Nannochloropsis oceanica|type=CDS|length=3591bp|location=Sequence derived from alignment at scaffold_5:985933..987899- (Nannochloropsis oceanica)
CGGGGACAGGATCGGAAGTCACTCCCTGGGCGGCCGTGTGGGACACCAAG
AAGAAGAAGAAGTGGTCGGTGCAAGGGCATAGCCTGTGGCCGGAGGCTGC
CATATTAGATCCCTCTCTCTCTGCGTCCTGCCCGAGGGAGGTCACGAGAA
ACAGCGCGCTGGACGCCCTGAGCCATTCCCTTGAAGCCCTGTGGAACGTG
AATCACAACCCAATCTCCGATGTTTTGGCCGTGGCTGCCGCGAAGGGAAT
CATGGCCCACTTGCCCACCATCCTCTCGCAAGACGAGCGTGATGGCAGCG
ATTGCGACCGGGAAATCGTCCAAGCACGCATCGGCCTCTCCACAGCCTCC
CTCCGCGCAGGTCTCGCTTTCAGTAACACCGAAACTGCGCTTGCGCACGC
CATCTCCTACCAAATTACGATCGAACAAGGCGTGAAGCACGGAGCAGCTT
GCTCTTTCTCCCTTCCCAGAGTGATGCAAATGGCACTGGGGCAGCAAGAC
CCGAGTCGGGACGCATTACTTCACGATATTTTTTCGGACATGAAAGTGGC
CGATGCGCTGGCTGGAAGAAGTGTCAGGCAGCCGTATGAGTATCTAGAGA
GATTTTTGAATGAAGAAGCAGGGGTATCCACAGCGCTAGAGGACTATGGT
ATTGCGGGCGAGAAGGACTTTTCGGAGCGAGTGAGGGAGGCTTTATGGCA
TCGGAGGGGGAGGAACTTCTTGTTGGCGGCTCATTTGAAGCGGTAGTATC
CGCAAGCTGAGGCCTCAGATGGTCTCTTTTCCAACCTTCGCGCCGTCCTC
GGCGAGGACAAGATGCTGTGGGTCGCATGCCCGGAGCTTCCTGACATGAA
TGAACACAGAGGGCTGCACCGTCGGATACGGAATTTTGTGCGGGATAGGG
ATGATTTCGTGATTGTAGCTGTAGGAGGGGGCAGTGTGTTGGACTTGGCG
AAGGTCATGAGTCTTGCACGGAGCCAGATGGATTTTGAGGATGTCTTCAC
GGAGCGCATCGCAAGGGGGAAGAGGATTGATAAATTGCGGCACGTGCCTG
TGATTGCCGTACCCACGACAGATGAGGCTGAGCGGCGCAGGCGTGAAGCG
CTTCTGCAATCCTGTCAAGTTAACTTTTACTGAATGGGGGAACTGGGAGC
CTGTTATTCTGGAGGCGGTGGGGAAAAGGAAGGCATTGCTAATGACGCGG
GGACAGGATCGGAAGTCACTCCCTGGGCGGCCGTGTGGGACACCAAGAAG
AAGAAGAAGTGGTCGGTGCAAGGGCATAGCCTGTGGCCGGAGGCTGCCAT
ATTAGATCCCTCTCTCTCTGCGTCCTGCCCGAGGGAGGTCACGAGAAACA
GCGCGCTGGACGCCCTGAGCCATTCCCTTGAAGCCCTGTGGAACGTGAAT
CACAACCCAATCTCCGATGTTTTGGCCGTGGCTGCCGCGAAGGGAATCAT
GGCCCACTTGCCCACCATCCTCTCGCAAGACGAGCGTGATGGCAGCGATT
GCGACCGGGAAATCGTCCAAGCACGCATCGGCCTCTCCACAGCCTCCCTC
CGCGCAGGTCTCGCTTTCAGTAACACCGAAACTGCGCTTGCGCACGCCAT
CTCCTACCAAATTACGATCGAACAAGGCGTGAAGCACGGAGCAGCTTGCT
CTTTCTCCCTTCCCAGAGTGATGCAAATGGCACTGGGGCAGCAAGACCCG
AGTCGGGACGCATTACTTCACGATATTTTTTCGGACATGAAAGTGGCCGA
TGCGCTGGCTGGAAGAAGTGTCAGGCAGCCGTATGAGTATCTAGAGAGAT
TTTTGAATGAAGAAGCAGGGGTATCCACAGCGCTAGAGGACTATGGTATT
GCGGGCGAGAAGGACTTTTCGGAGCGAGTGAGGGAGGCTTTATGGCATCG
GAGGGGGAGGAACTTCTTGTTGGCGGCTCATTTGAAGCGGTAGTATCCGC
AAGCTGAGGCCTCAGATGGTCTCTTTTCCAACCTTCGCGCCGTCCTCGGC
GAGGACAAGATGCTGTGGGTCGCATGCCCGGAGCTTCCTGACATGAATGA
ACACAGAGGGCTGCACCGTCGGATACGGAATTTTGTGCGGGATAGGGATG
ATTTCGTGATTGTAGCTGTAGGAGGGGGCAGTGTGTTGGACTTGGCGAAG
GTCATGAGTCTTGCACGGAGCCAGATGGATTTTGAGGATGTCTTCACGGA
GCGCATCGCAAGGGGGAAGAGGATTGATAAATTGCGGCACGTGCCTGTGA
TTGCCGTACCCACGACAGATGAGGCTGAGCGGCGCAGGCGTGAAGCGCTT
CTGCAATCCTGTCAAGTTAACTTTTACTGAATGGGGGAACTGGGAGCCTG
TTATTCTGGAGGCGGTGGGGAAAAGGAAGGCATTGCTAATGACGCGGGGA
CAGGATCGGAAGTCACTCCCTGGGCGGCCGTGTGGGACACCAAGAAGAAG
AAGAAGTGGTCGGTGCAAGGGCATAGCCTGTGGCCGGAGGCTGCCATATT
AGATCCCTCTCTCTCTGCGTCCTGCCCGAGGGAGGTCACGAGAAACAGCG
CGCTGGACGCCCTGAGCCATTCCCTTGAAGCCCTGTGGAACGTGAATCAC
AACCCAATCTCCGATGTTTTGGCCGTGGCTGCCGCGAAGGGAATCATGGC
CCACTTGCCCACCATCCTCTCGCAAGACGAGCGTGATGGCAGCGATTGCG
ACCGGGAAATCGTCCAAGCACGCATCGGCCTCTCCACAGCCTCCCTCCGC
GCAGGTCTCGCTTTCAGTAACACCGAAACTGCGCTTGCGCACGCCATCTC
CTACCAAATTACGATCGAACAAGGCGTGAAGCACGGAGCAGCTTGCTCTT
TCTCCCTTCCCAGAGTGATGCAAATGGCACTGGGGCAGCAAGACCCGAGT
CGGGACGCATTACTTCACGATATTTTTTCGGACATGAAAGTGGCCGATGC
GCTGGCTGGAAGAAGTGTCAGGCAGCCGTATGAGTATCTAGAGAGATTTT
TGAATGAAGAAGCAGGGGTATCCACAGCGCTAGAGGACTATGGTATTGCG
GGCGAGAAGGACTTTTCGGAGCGAGTGAGGGAGGCTTTATGGCATCGGAG
GGGGAGGAACTTCTTGTTGGCGGCTCATTTGAAGCGGTAGTATCCGCAAG
CTGAGGCCTCAGATGGTCTCTTTTCCAACCTTCGCGCCGTCCTCGGCGAG
GACAAGATGCTGTGGGTCGCATGCCCGGAGCTTCCTGACATGAATGAACA
CAGAGGGCTGCACCGTCGGATACGGAATTTTGTGCGGGATAGGGATGATT
TCGTGATTGTAGCTGTAGGAGGGGGCAGTGTGTTGGACTTGGCGAAGGTC
ATGAGTCTTGCACGGAGCCAGATGGATTTTGAGGATGTCTTCACGGAGCG
CATCGCAAGGGGGAAGAGGATTGATAAATTGCGGCACGTGCCTGTGATTG
CCGTACCCACGACAGATGAGGCTGAGCGGCGCAGGCGTGAAGCGCTTCTG
CAATCCTGTCAAGTTAACTTTTACTGAATGGGGGAACTGGGAGCCTGTTA
TTCTGGAGGCGGTGGGGAAAAGGAAGGCATTGCTAATGACG back to top
|