jgi.p|Nanoce1779_2|581249, mRNA_2705 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581249
Unique NamemRNA_2705
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1196
Alignment locationscaffold_5:984643..985838 +

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Properties
Property NameValue
TranscriptId581335
TrackFilteredModels2
ProteinId581249
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:984643..985838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581249gene_2705Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581249mRNA_2705-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2705CDS_2705Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2705 ID=mRNA_2705|Name=jgi.p|Nanoce1779_2|581249|organism=Nannochloropsis oceanica|type=mRNA|length=1196bp
ACAGCCATGCCTACAGGCACAAAAAAGAAGTCGGAGGCGTCGAACTCCTT
GTCACCTTCCTCATCCGCAGTCCTTACACCGTCACCATTGCCAGCCTCCT
CCCTCGAATCAGAGCTGGCCCGGGGCCTGAAGCTCACAGAGGAGCTCACG
TCGTCCACCTCTACTAGCACCACCGAAAGCGCTTGCAAAACCTCCAACAG
ATCCAACATTCAGCCCAACAAGCAAGGCATCACCGTACTCTTCGAAGTTG
ATCTGCAATATGCCCCCCTGGCCGAGGACGCCGACGCTTCCGCCACGAAG
CGCAAATGTCACTTGCCCTCCTGCCCGGTGACCGACGGCAGCAGTTCCAC
CCCGCTTGCAAGCTGTGCACAATGCAAAACTGTACGTTACTGTGGGCGAG
TGCATCAAACGCAGGATTGGAAGCTAGGGCATAAACACGAATGTGCCCAA
TGGAAGACCTTGAGGGCCATGGCAGTGGCAGCCGAGGTGTTGGCAAGTGC
CGAGTTAAAGGGAGGAGCTGATGAAGAGGAGGCAGGCCTCAATGAGAGCA
AGAGCAATAATACTTCAACACCTAGTACTAGCACCGCCTCTGTGGAATCA
AAAGCTATCTATGACGAGGACATTGCCTCCCCTCCATCCACCGATACCAG
CTCCTTTCCTGCCGCCACACGAGCTACAGCCAGCACCTTCCCTCTCCCTC
TGAACTTCGACAGACAAGATATCGCCTGCAAACTTCTCTGCAAGATTCGT
CTCCACCTCGGCCCCTACACCATAGCTCACTACGACAAGCAAGGCAGAGG
GTTTGCTTTTGTCCAATCTACCGCCACGGCCCACGACCTCTTCATCGCCC
GCCCCATCACCTCGAAAGGGCGCCCGCTAGAGCGAAGCGTCCTCATCCAC
TTCTTGACCTGGGGTGAATTCATCAGTGTGGTCCTAGAAGACGATTTTGA
GTACACTGTGGCGAGAGAACCGTTACAAGAGGCCTTGGCAGTTTACGACC
CGGAAGATGAATACGTTGTGCTCCTGAAACTTAGATGCGGGTTTTTGGCC
GTGATGCGCGTGCCGCTCGTGCCGGATGCGAGGGCGTGTAGAAAATTGGC
GGAGGACTATCAGTGGGCGGACAGGACGTCGGTCAAACTGGAGTTGGATT
AAGAGGGAAGGGAGGGAGGGAGAGAGGGAAGTAGGGAGGGAAGAGG
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protein sequence of jgi.p|Nanoce1779_2|581249

>mRNA_2705-protein ID=mRNA_2705-protein|Name=jgi.p|Nanoce1779_2|581249|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MPTGTKKKSEASNSLSPSSSAVLTPSPLPASSLESELARGLKLTEELTSS
TSTSTTESACKTSNRSNIQPNKQGITVLFEVDLQYAPLAEDADASATKRK
CHLPSCPVTDGSSSTPLASCAQCKTVRYCGRVHQTQDWKLGHKHECAQWK
TLRAMAVAAEVLASAELKGGADEEEAGLNESKSNNTSTPSTSTASVESKA
IYDEDIASPPSTDTSSFPAATRATASTFPLPLNFDRQDIACKLLCKIRLH
LGPYTIAHYDKQGRGFAFVQSTATAHDLFIARPITSKGRPLERSVLIHFL
TWGEFISVVLEDDFEYTVAREPLQEALAVYDPEDEYVVLLKLRCGFLAVM
RVPLVPDARACRKLAEDYQWADRTSVKLELD*
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mRNA from alignment at scaffold_5:984643..985838+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2705 ID=mRNA_2705|Name=jgi.p|Nanoce1779_2|581249|organism=Nannochloropsis oceanica|type=mRNA|length=1196bp|location=Sequence derived from alignment at scaffold_5:984643..985838+ (Nannochloropsis oceanica)
ACAGCCATGCCTACAGGCACAAAAAAGAAGTCGGAGGCGTCGAACTCCTT
GTCACCTTCCTCATCCGCAGTCCTTACACCGTCACCATTGCCAGCCTCCT
CCCTCGAATCAGAGCTGGCCCGGGGCCTGAAGCTCACAGAGGAGCTCACG
TCGTCCACCTCTACTAGCACCACCGAAAGCGCTTGCAAAACCTCCAACAG
ATCCAACATTCAGCCCAACAAGCAAGGCATCACCGTACTCTTCGAAGTTG
ATCTGCAATATGCCCCCCTGGCCGAGGACGCCGACGCTTCCGCCACGAAG
CGCAAATGTCACTTGCCCTCCTGCCCGGTGACCGACGGCAGCAGTTCCAC
CCCGCTTGCAAGCTGTGCACAATGCAAAACTGTACGTTACTGTGGGCGAG
TGCATCAAACGCAGGATTGGAAGCTAGGGCATAAACACGAATGTGCCCAA
TGGAAGACCTTGAGGGCCATGGCAGTGGCAGCCGAGGTGTTGGCAAGTGC
CGAGTTAAAGGGAGGAGCTGATGAAGAGGAGGCAGGCCTCAATGAGAGCA
AGAGCAATAATACTTCAACACCTAGTACTAGCACCGCCTCTGTGGAATCA
AAAGCTATCTATGACGAGGACATTGCCTCCCCTCCATCCACCGATACCAG
CTCCTTTCCTGCCGCCACACGAGCTACAGCCAGCACCTTCCCTCTCCCTC
TGAACTTCGACAGACAAGATATCGCCTGCAAACTTCTCTGCAAGATTCGT
CTCCACCTCGGCCCCTACACCATAGCTCACTACGACAAGCAAGGCAGAGG
GTTTGCTTTTGTCCAATCTACCGCCACGGCCCACGACCTCTTCATCGCCC
GCCCCATCACCTCGAAAGGGCGCCCGCTAGAGCGAAGCGTCCTCATCCAC
TTCTTGACCTGGGGTGAATTCATCAGTGTGGTCCTAGAAGACGATTTTGA
GTACACTGTGGCGAGAGAACCGTTACAAGAGGCCTTGGCAGTTTACGACC
CGGAAGATGAATACGTTGTGCTCCTGAAACTTAGATGCGGGTTTTTGGCC
GTGATGCGCGTGCCGCTCGTGCCGGATGCGAGGGCGTGTAGAAAATTGGC
GGAGGACTATCAGTGGGCGGACAGGACGTCGGTCAAACTGGAGTTGGATT
AAGAGGGAAGGGAGGGAGGGAGAGAGGGAAGTAGGGAGGGAAGAGG
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Coding sequence (CDS) from alignment at scaffold_5:984643..985838+

>mRNA_2705 ID=mRNA_2705|Name=jgi.p|Nanoce1779_2|581249|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at scaffold_5:984643..985838+ (Nannochloropsis oceanica)
ATGCCTACAGGCACAAAAAAGAAGTCGGAGGCGTCGAACTCCTTGTCACC
TTCCTCATCCGCAGTCCTTACACCGTCACCATTGCCAGCCTCCTCCCTCG
AATCAGAGCTGGCCCGGGGCCTGAAGCTCACAGAGGAGCTCACGTCGTCC
ACCTCTACTAGCACCACCGAAAGCGCTTGCAAAACCTCCAACAGATCCAA
CATTCAGCCCAACAAGCAAGGCATCACCGTACTCTTCGAAGTTGATCTGC
AATATGCCCCCCTGGCCGAGGACGCCGACGCTTCCGCCACGAAGCGCAAA
TGTCACTTGCCCTCCTGCCCGGTGACCGACGGCAGCAGTTCCACCCCGCT
TGCAAGCTGTGCACAATGCAAAACTGTACGTTACTGTGGGCGAGTGCATC
AAACGCAGGATTGGAAGCTAGGGCATAAACACGAATGTGCCCAATGGAAG
ACCTTGAGGGCCATGGCAGTGGCAGCCGAGGTGTTGGCAAGTGCCGAGTT
AAAGGGAGGAGCTGATGAAGAGGAGGCAGGCCTCAATGAGAGCAAGAGCA
ATAATACTTCAACACCTAGTACTAGCACCGCCTCTGTGGAATCAAAAGCT
ATCTATGACGAGGACATTGCCTCCCCTCCATCCACCGATACCAGCTCCTT
TCCTGCCGCCACACGAGCTACAGCCAGCACCTTCCCTCTCCCTCTGAACT
TCGACAGACAAGATATCGCCTGCAAACTTCTCTGCAAGATTCGTCTCCAC
CTCGGCCCCTACACCATAGCTCACTACGACAAGCAAGGCAGAGGGTTTGC
TTTTGTCCAATCTACCGCCACGGCCCACGACCTCTTCATCGCCCGCCCCA
TCACCTCGAAAGGGCGCCCGCTAGAGCGAAGCGTCCTCATCCACTTCTTG
ACCTGGGGTGAATTCATCAGTGTGGTCCTAGAAGACGATTTTGAGTACAC
TGTGGCGAGAGAACCGTTACAAGAGGCCTTGGCAGTTTACGACCCGGAAG
ATGAATACGTTGTGCTCCTGAAACTTAGATGCGGGTTTTTGGCCGTGATG
CGCGTGCCGCTCGTGCCGGATGCGAGGGCGTGTAGAAAATTGGCGGAGGA
CTATCAGTGGGCGGACAGGACGTCGGTCAAACTGGAGTTGGATTAA
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Synonyms
Publications