jgi.p|Nanoce1779_2|564205, mRNA_2704 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|564205
Unique NamemRNA_2704
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1401
Alignment locationscaffold_5:982789..984279 -

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Properties
Property NameValue
TranscriptId564291
TrackFilteredModels2
ProteinId564205
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:982789..984279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564205gene_2704Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564205mRNA_2704-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2704CDS_2704Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2704 ID=mRNA_2704|Name=jgi.p|Nanoce1779_2|564205|organism=Nannochloropsis oceanica|type=mRNA|length=1401bp
ATGGCGCCGCCGCCTGCCCTCGGTTCTCCTACTCCGGCTTTCACCAACAT
GAAGGCCAGCTACGGCACCGTCCCAGCCCAGCAACTTACGTACGCTCCGG
TCCACGAAGATGATAAAGATGTCGAAGCTGTGCGTGGTTCGGCGCTCGAC
GCCCCCGCAGCTGCTGCGGCACTCAAAATGGACGCTGTCGGCCCAACAAC
GACGATGCACAAGAGGCGCTGGGTGCCAGGATGGGCCTACTTGGCCGTGT
TTGTACTACTTTATTCGGCCAACAACGCAGTCCTTGCAGGGCTCATGGCT
AAAGGCTACCCCTACACCATCTGCAACATCATGTGCATTGGGAACCTCGT
CGGCATTTTGACTCTCTTCCCCGTCTTCTACCGCCAACTTAGCTGGACGA
ACCTCCGTCAGACCACCTGCGTTCAATGGGGATGGATACTGCTTGGCTGC
CTCCTTGCTAATGTCCTTGGTTCCATGGCCTACCTGCAGGGTTTACGGCT
TACTAGTGTGCCCGCCCGTGCTATGACGGGAAGATTGGAAAGCGTTGATT
TTTTGATGGCGTCTGCGTGGTTTTTGGGGGAACGGTACGGAGGGTGGGTG
CAGGTGAACGCGTTGCTCACTGTGGTAGGAGTTGTGACCGCTGTAGCCTT
CCCTCTGGTGGTCCAGCATAACCCGATGGAGGGAAAGGTGGGATATGTGT
ATCTAGTTCTGGGTGGATGGGGATATACATTGTCGCTTTTGATCACGAAA
AAGTACTTGGTTTCTCTTCCCGTGGGCCTTCTCTCCCTATTTAAGCTGTC
GTTGGGCACCATCCTCTTTCACTTCCTCTCCGTCTGGCAATACGGACAAA
TGGACATGCCCTCCCTCGCCTCCTCAACCTCTTTCCCCTACTTGTACTAT
CCGTCCAGCCTCCTTCGCACCATGTTGTGGTATGCCCCTCTTTTTGTCAC
GTCCACACAAATTTTGTGGCTCCGTGCTTTGAAGCTTTGTCCTCCCTCCG
TTCTCTCTATTGGTATGAATGCTAATTTCATCGTTACAGTGTTGATGGGT
GGCGTTATATTAGGAAAATGGCCCACGATGGGGGAATTGGTGGGGGGATC
TTTTATTTTAATTAGTATTGTCAGCGGGATGGCGGAAACTTTGCTAAATG
AAAGGGGGAAGGACGGGGAGAAGGAGGGAGGGAGGAGGGAGAGAAGGGGG
AAGAGGCACAAATTGAGGAGAGATAAGAGGGTGGTTGGAGGCGAGGAGGT
GGGTGAAAACCCGGAAGGAGAGAAGGATGACGGTTGGTATAGCGATGAGG
AGGGAGAAGGAATGTTATTGTTGAAGAGACCGCATTTCCAAGCCTGTCAC
ATTGAACAGGACTCCTTGTCTGTCGGATTCGGACCGCATGGCATAATGTA
A
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protein sequence of jgi.p|Nanoce1779_2|564205

>mRNA_2704-protein ID=mRNA_2704-protein|Name=jgi.p|Nanoce1779_2|564205|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp
MAPPPALGSPTPAFTNMKASYGTVPAQQLTYAPVHEDDKDVEAVRGSALD
APAAAAALKMDAVGPTTTMHKRRWVPGWAYLAVFVLLYSANNAVLAGLMA
KGYPYTICNIMCIGNLVGILTLFPVFYRQLSWTNLRQTTCVQWGWILLGC
LLANVLGSMAYLQGLRLTSVPARAMTGRLESVDFLMASAWFLGERYGGWV
QVNALLTVVGVVTAVAFPLVVQHNPMEGKVGYVYLVLGGWGYTLSLLITK
KYLVSLPVGLLSLFKLSLGTILFHFLSVWQYGQMDMPSLASSTSFPYLYY
PSSLLRTMLWYAPLFVTSTQILWLRALKLCPPSVLSIGMNANFIVTVLMG
GVILGKWPTMGELVGGSFILISIVSGMAETLLNERGKDGEKEGGRRERRG
KRHKLRRDKRVVGGEEVGENPEGEKDDGWYSDEEGEGMLLLKRPHFQACH
IEQDSLSVGFGPHGIM*
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mRNA from alignment at scaffold_5:982789..984279-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2704 ID=mRNA_2704|Name=jgi.p|Nanoce1779_2|564205|organism=Nannochloropsis oceanica|type=mRNA|length=1491bp|location=Sequence derived from alignment at scaffold_5:982789..984279- (Nannochloropsis oceanica)
ATGGCGCCGCCGCCTGCCCTCGGTTCTCCTACTCCGGCTTTCACCAACAT
GAAGGCCAGCTACGGCACCGTCCCAGCCCAGCAACTTACGTACGCTCCGG
TCCACGAAGATGATAAAGATGTCGAAGCTGTGCGTGGTTCGGCGCTCGAC
GCCCCCGCAGCTGCTGCGGCACTCAAAATGGACGCTGTCGGCCCAACAAC
GACGATGCACAAGAGGCGCTGGGTGCCAGGATGGGCCTACTTGGCCGTGT
TTGTACTACTTTATTCGGCCAACAACGCAGTCCTTGCAGGGCTCATGGCT
AAAGGGTATGTTTCGCGTGAGCGTGATGCGTTTAAGGGTGTGTGTTTTGA
ACATTCCTTTCTTGTCTGGACCTAATCCTTTTTCTTTACACACAGCTACC
CCTACACCATCTGCAACATCATGTGCATTGGGAACCTCGTCGGCATTTTG
ACTCTCTTCCCCGTCTTCTACCGCCAACTTAGCTGGACGAACCTCCGTCA
GACCACCTGCGTTCAATGGGGATGGATACTGCTTGGCTGCCTCCTTGCTA
ATGTCCTTGGTTCCATGGCCTACCTGCAGGGTTTACGGCTTACTAGTGTG
CCCGCCCGTGCTATGACGGGAAGATTGGAAAGCGTTGATTTTTTGATGGC
GTCTGCGTGGTTTTTGGGGGAACGGTACGGAGGGTGGGTGCAGGTGAACG
CGTTGCTCACTGTGGTAGGAGTTGTGACCGCTGTAGCCTTCCCTCTGGTG
GTCCAGCATAACCCGATGGAGGGAAAGGTGGGATATGTGTATCTAGTTCT
GGGTGGATGGGGATATACATTGTCGCTTTTGATCACGAAAAAGTACTTGG
TTTCTCTTCCCGTGGGCCTTCTCTCCCTATTTAAGCTGTCGTTGGGCACC
ATCCTCTTTCACTTCCTCTCCGTCTGGCAATACGGACAAATGGACATGCC
CTCCCTCGCCTCCTCAACCTCTTTCCCCTACTTGTACTATCCGTCCAGCC
TCCTTCGCACCATGTTGTGGTATGCCCCTCTTTTTGTCACGTCCACACAA
ATTTTGTGGCTCCGTGCTTTGAAGCTTTGTCCTCCCTCCGTTCTCTCTAT
TGGTATGAATGCTAATTTCATCGTTACAGTGTTGATGGGTGGCGTTATAT
TAGGAAAATGGCCCACGATGGGGGAATTGGTGGGGGGATCTTTTATTTTA
ATTAGTATTGTCAGCGGGATGGCGGAAACTTTGCTAAATGAAAGGGGGAA
GGACGGGGAGAAGGAGGGAGGGAGGAGGGAGAGAAGGGGGAAGAGGCACA
AATTGAGGAGAGATAAGAGGGTGGTTGGAGGCGAGGAGGTGGGTGAAAAC
CCGGAAGGAGAGAAGGATGACGGTTGGTATAGCGATGAGGAGGGAGAAGG
AATGTTATTGTTGAAGAGACCGCATTTCCAAGCCTGTCACATTGAACAGG
ACTCCTTGTCTGTCGGATTCGGACCGCATGGCATAATGTAA
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Coding sequence (CDS) from alignment at scaffold_5:982789..984279-

>mRNA_2704 ID=mRNA_2704|Name=jgi.p|Nanoce1779_2|564205|organism=Nannochloropsis oceanica|type=CDS|length=2802bp|location=Sequence derived from alignment at scaffold_5:982789..984279- (Nannochloropsis oceanica)
CTACCCCTACACCATCTGCAACATCATGTGCATTGGGAACCTCGTCGGCA
TTTTGACTCTCTTCCCCGTCTTCTACCGCCAACTTAGCTGGACGAACCTC
CGTCAGACCACCTGCGTTCAATGGGGATGGATACTGCTTGGCTGCCTCCT
TGCTAATGTCCTTGGTTCCATGGCCTACCTGCAGGGTTTACGGCTTACTA
GTGTGCCCGCCCGTGCTATGACGGGAAGATTGGAAAGCGTTGATTTTTTG
ATGGCGTCTGCGTGGTTTTTGGGGGAACGGTACGGAGGGTGGGTGCAGGT
GAACGCGTTGCTCACTGTGGTAGGAGTTGTGACCGCTGTAGCCTTCCCTC
TGGTGGTCCAGCATAACCCGATGGAGGGAAAGGTGGGATATGTGTATCTA
GTTCTGGGTGGATGGGGATATACATTGTCGCTTTTGATCACGAAAAAGTA
CTTGGTTTCTCTTCCCGTGGGCCTTCTCTCCCTATTTAAGCTGTCGTTGG
GCACCATCCTCTTTCACTTCCTCTCCGTCTGGCAATACGGACAAATGGAC
ATGCCCTCCCTCGCCTCCTCAACCTCTTTCCCCTACTTGTACTATCCGTC
CAGCCTCCTTCGCACCATGTTGTGGTATGCCCCTCTTTTTGTCACGTCCA
CACAAATTTTGTGGCTCCGTGCTTTGAAGCTTTGTCCTCCCTCCGTTCTC
TCTATTGGTATGAATGCTAATTTCATCGTTACAGTGTTGATGGGTGGCGT
TATATTAGGAAAATGGCCCACGATGGGGGAATTGGTGGGGGGATCTTTTA
TTTTAATTAGTATTGTCAGCGGGATGGCGGAAACTTTGCTAAATGAAAGG
GGGAAGGACGGGGAGAAGGAGGGAGGGAGGAGGGAGAGAAGGGGGAAGAG
GCACAAATTGAGGAGAGATAAGAGGGTGGTTGGAGGCGAGGAGGTGGGTG
AAAACCCGGAAGGAGAGAAGGATGACGGTTGGTATAGCGATGAGGAGGGA
GAAGGAATGTTATTGTTGAAGAGACCGCATTTCCAAGCCTGTCACATTGA
ACAGGACTCCTTGTCTGTCGGATTCGGACCGCATGGCATAATGTAAATGG
CGCCGCCGCCTGCCCTCGGTTCTCCTACTCCGGCTTTCACCAACATGAAG
GCCAGCTACGGCACCGTCCCAGCCCAGCAACTTACGTACGCTCCGGTCCA
CGAAGATGATAAAGATGTCGAAGCTGTGCGTGGTTCGGCGCTCGACGCCC
CCGCAGCTGCTGCGGCACTCAAAATGGACGCTGTCGGCCCAACAACGACG
ATGCACAAGAGGCGCTGGGTGCCAGGATGGGCCTACTTGGCCGTGTTTGT
ACTACTTTATTCGGCCAACAACGCAGTCCTTGCAGGGCTCATGGCTAAAG
GCTACCCCTACACCATCTGCAACATCATGTGCATTGGGAACCTCGTCGGC
ATTTTGACTCTCTTCCCCGTCTTCTACCGCCAACTTAGCTGGACGAACCT
CCGTCAGACCACCTGCGTTCAATGGGGATGGATACTGCTTGGCTGCCTCC
TTGCTAATGTCCTTGGTTCCATGGCCTACCTGCAGGGTTTACGGCTTACT
AGTGTGCCCGCCCGTGCTATGACGGGAAGATTGGAAAGCGTTGATTTTTT
GATGGCGTCTGCGTGGTTTTTGGGGGAACGGTACGGAGGGTGGGTGCAGG
TGAACGCGTTGCTCACTGTGGTAGGAGTTGTGACCGCTGTAGCCTTCCCT
CTGGTGGTCCAGCATAACCCGATGGAGGGAAAGGTGGGATATGTGTATCT
AGTTCTGGGTGGATGGGGATATACATTGTCGCTTTTGATCACGAAAAAGT
ACTTGGTTTCTCTTCCCGTGGGCCTTCTCTCCCTATTTAAGCTGTCGTTG
GGCACCATCCTCTTTCACTTCCTCTCCGTCTGGCAATACGGACAAATGGA
CATGCCCTCCCTCGCCTCCTCAACCTCTTTCCCCTACTTGTACTATCCGT
CCAGCCTCCTTCGCACCATGTTGTGGTATGCCCCTCTTTTTGTCACGTCC
ACACAAATTTTGTGGCTCCGTGCTTTGAAGCTTTGTCCTCCCTCCGTTCT
CTCTATTGGTATGAATGCTAATTTCATCGTTACAGTGTTGATGGGTGGCG
TTATATTAGGAAAATGGCCCACGATGGGGGAATTGGTGGGGGGATCTTTT
ATTTTAATTAGTATTGTCAGCGGGATGGCGGAAACTTTGCTAAATGAAAG
GGGGAAGGACGGGGAGAAGGAGGGAGGGAGGAGGGAGAGAAGGGGGAAGA
GGCACAAATTGAGGAGAGATAAGAGGGTGGTTGGAGGCGAGGAGGTGGGT
GAAAACCCGGAAGGAGAGAAGGATGACGGTTGGTATAGCGATGAGGAGGG
AGAAGGAATGTTATTGTTGAAGAGACCGCATTTCCAAGCCTGTCACATTG
AACAGGACTCCTTGTCTGTCGGATTCGGACCGCATGGCATAATGTAAATG
GCGCCGCCGCCTGCCCTCGGTTCTCCTACTCCGGCTTTCACCAACATGAA
GGCCAGCTACGGCACCGTCCCAGCCCAGCAACTTACGTACGCTCCGGTCC
ACGAAGATGATAAAGATGTCGAAGCTGTGCGTGGTTCGGCGCTCGACGCC
CCCGCAGCTGCTGCGGCACTCAAAATGGACGCTGTCGGCCCAACAACGAC
GATGCACAAGAGGCGCTGGGTGCCAGGATGGGCCTACTTGGCCGTGTTTG
TACTACTTTATTCGGCCAACAACGCAGTCCTTGCAGGGCTCATGGCTAAA
GG
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Synonyms
Publications