jgi.p|Nanoce1779_2|576772, mRNA_270 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576772
Unique NamemRNA_270
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1484
Alignment locationscaffold_3:672131..674045 -

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Properties
Property NameValue
TranscriptId576858
TrackFilteredModels2
ProteinId576772
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:672131..674045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576772gene_270Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576772mRNA_270-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_270CDS_270Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_270 ID=mRNA_270|Name=jgi.p|Nanoce1779_2|576772|organism=Nannochloropsis oceanica|type=mRNA|length=1484bp
AACAGGGTCAGGATTAAGATGGAAGGTAGAGAAGCAGGAAGAAGCTCCCA
GCTTGAGTCAACAACGGCGCCACCATCCCAAAGAGAAAAAAAGCAACAGC
TGGACCAGGTGCAGCCTGCAACGACGCAGACGCATGAGACCCCTGACCCC
ACGCTGGCCATAGGGAACTCGCCCCGCTTTTTGGGTGACCGACAGCCCCT
TCCCGACGAGCTCCAGCTCCTAGAAGATTTTCAGCTCCTGCTTGACGAGG
GCCAAGTTGCGTTGCCGCGCAGCTTTTGGGAGGCCAATTACAATGAGTCG
CGATGCAGTCTCTTTTGGCGCTTCCTCGTCGCCAACGAAGGCCACCTTGC
GCACGCAAAAGAGCAGCTGACCAAGGACATAGCCTGGAGGGAGGATATAA
AGCTCTATGAGCTGCAGGGCCGAACACGCGAAGAAATAGTTGGCGTGGAT
GATGCTTTTTTCTTGGAGCAGTACCCGTGCATTTTCCTAGGCTACGAAGA
CGAAGCTAACAACTATGCTCCTGTAGTGTATAGGAGTTTAACGCACTTGC
AGACCAAGGCTTTGGCAGCAAAGGGCGTGACAGTCGAGAAAATGGTCAAG
CACGAGCTCTGGCAGTATGAGACGGATTGCAAGCTCTTGTTCTCGCATCC
CGAAAGCTTCCCAGCTCGGCAACTTAAAGTTATCATTGACATTAATGGTA
TGACCTGGGGGCAATGCACCAAAGACTTGGTGAGCATCCTCTCTGGATTT
TCATCTTTCAGCAAGCTCCATCACCCTGAACGCCTGCAGAAGCTCTTCAT
TATTGGTGCGCCCAAACCATTTCTCTTTATATGGAATACTATCATTTCAC
ACATCATTCCGGTGAGTACCAAGAATAAGATCACGATTCTACACACATTT
GAAGGGCATCTGTGGCTGGAGGCATGGATGGCGAAGCTCCCGGCAGCCTT
GGAGGACGCAAAAGCCAAGGCAGCATCAGCACCGACGGGGCCAAAATAAC
TTGTGTGTGTGCGCAGAGAAATATGATAAGGACATGAACATGTAAATATT
GAAGTATTGAAGAAACCTCTCTGTTGTGGGTCAACTTGTGAAGATCGCGG
AGTCCATCCCACTAACTCGGGACACGCTGTCTCTGGTGTCTTGGCTGCCT
ACCTTTTTTTTAACCATACAAAAGCACAATCAAATTCCAGGAAACTGATC
ACAATAGCTAGAGTAGAGGTGGACTTGTCACTTTTATCGAGTCACATCTG
GAATTGGTTGTTGCTGACCAGTTTGGGGTGAAAATCACCGTGAGATTTCT
TGGCACGATGTTCCTCGTGATGCGGACGACGAGCTCTTGCCGCTTTATGT
CAATGCTCACGTATCATAACAAATATCAAACGCAAACGAAAAATATGACA
CTACAGAAAAAGGCGTGCAGTTACTTGCATGAAACGTGTTAAGATGGAGA
GCTTAGAACCTTTGCTGTACAGTTTAAAAAAAAA
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protein sequence of jgi.p|Nanoce1779_2|576772

>mRNA_270-protein ID=mRNA_270-protein|Name=jgi.p|Nanoce1779_2|576772|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MEGREAGRSSQLESTTAPPSQREKKQQLDQVQPATTQTHETPDPTLAIGN
SPRFLGDRQPLPDELQLLEDFQLLLDEGQVALPRSFWEANYNESRCSLFW
RFLVANEGHLAHAKEQLTKDIAWREDIKLYELQGRTREEIVGVDDAFFLE
QYPCIFLGYEDEANNYAPVVYRSLTHLQTKALAAKGVTVEKMVKHELWQY
ETDCKLLFSHPESFPARQLKVIIDINGMTWGQCTKDLVSILSGFSSFSKL
HHPERLQKLFIIGAPKPFLFIWNTIISHIIPVSTKNKITILHTFEGHLWL
EAWMAKLPAALEDAKAKAASAPTGPK*
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mRNA from alignment at scaffold_3:672131..674045-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_270 ID=mRNA_270|Name=jgi.p|Nanoce1779_2|576772|organism=Nannochloropsis oceanica|type=mRNA|length=1915bp|location=Sequence derived from alignment at scaffold_3:672131..674045- (Nannochloropsis oceanica)
AACAGGGTCAGGATTAAGATGGAAGGTAGAGAAGCAGGAAGAAGCTCCCA
GCTTGAGTCAACAACGGCGCCACCATCCCAAAGAGAAAAAAAGCAACAGC
TGGACCAGGTGCAGCCTGCAACGACGCAGACGCATGAGACCCCTGACCCC
ACGCTGGCCATAGGGAACTCGCCCCGCTTTTTGGGTGACCGACAGCCCCT
TCCCGACGAGCTCCAGCTCCTAGAAGATTTTCAGCTCCTGCTTGACGAGG
GCCAAGTTGCGTTGCCGCGCAGGTACGTACGTGTTAGGACTTTTTGTGTC
AATCCCTGCTGTGATCTTGCTTACTTCTGATGGAGTTCCTTGTGGGGAAT
CTCTTCTCAGCACACGTGCACTTACCACGATTTGGGCGTGGTGCATCTCC
GTCTCCTTCATTTCGACCTCCCTTGGTGTGCGTGGCCCATGCCGATATCT
AGAAAGTGCACTTCGATGGGAGAACGCTCAAAAATGTATTGTTTTGTTGT
TGTTGAAAATATCAAATGCGCCCCATTATGAATTATTGGATTTGAACGAA
GAGGGTGCATGTTCGTGGAAGCTCCGCGATTTCAAAAGGTAACAGCGGAG
ACCGATTTAGTCACCACAAGAGTACATTGGAAGGTGGGCACACTCCTCAA
TCTTCTCCTCAGCCCACGGTTTCATTTATTCTTTCACGCATAATAACACA
CAGCTTTTGGGAGGCCAATTACAATGAGTCGCGATGCAGTCTCTTTTGGC
GCTTCCTCGTCGCCAACGAAGGCCACCTTGCGCACGCAAAAGAGCAGCTG
ACCAAGGACATAGCCTGGAGGGAGGATATAAAGCTCTATGAGCTGCAGGG
CCGAACACGCGAAGAAATAGTTGGCGTGGATGATGCTTTTTTCTTGGAGC
AGTACCCGTGCATTTTCCTAGGCTACGAAGACGAAGCTAACAACTATGCT
CCTGTAGTGTATAGGAGTTTAACGCACTTGCAGACCAAGGCTTTGGCAGC
AAAGGGCGTGACAGTCGAGAAAATGGTCAAGCACGAGCTCTGGCAGTATG
AGACGGATTGCAAGCTCTTGTTCTCGCATCCCGAAAGCTTCCCAGCTCGG
CAACTTAAAGTTATCATTGACATTAATGGTATGACCTGGGGGCAATGCAC
CAAAGACTTGGTGAGCATCCTCTCTGGATTTTCATCTTTCAGCAAGCTCC
ATCACCCTGAACGCCTGCAGAAGCTCTTCATTATTGGTGCGCCCAAACCA
TTTCTCTTTATATGGAATACTATCATTTCACACATCATTCCGGTGAGTAC
CAAGAATAAGATCACGATTCTACACACATTTGAAGGGCATCTGTGGCTGG
AGGCATGGATGGCGAAGCTCCCGGCAGCCTTGGAGGACGCAAAAGCCAAG
GCAGCATCAGCACCGACGGGGCCAAAATAACTTGTGTGTGTGCGCAGAGA
AATATGATAAGGACATGAACATGTAAATATTGAAGTATTGAAGAAACCTC
TCTGTTGTGGGTCAACTTGTGAAGATCGCGGAGTCCATCCCACTAACTCG
GGACACGCTGTCTCTGGTGTCTTGGCTGCCTACCTTTTTTTTAACCATAC
AAAAGCACAATCAAATTCCAGGAAACTGATCACAATAGCTAGAGTAGAGG
TGGACTTGTCACTTTTATCGAGTCACATCTGGAATTGGTTGTTGCTGACC
AGTTTGGGGTGAAAATCACCGTGAGATTTCTTGGCACGATGTTCCTCGTG
ATGCGGACGACGAGCTCTTGCCGCTTTATGTCAATGCTCACGTATCATAA
CAAATATCAAACGCAAACGAAAAATATGACACTACAGAAAAAGGCGTGCA
GTTACTTGCATGAAACGTGTTAAGATGGAGAGCTTAGAACCTTTGCTGTA
CAGTTTAAAAAAAAA
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Coding sequence (CDS) from alignment at scaffold_3:672131..674045-

>mRNA_270 ID=mRNA_270|Name=jgi.p|Nanoce1779_2|576772|organism=Nannochloropsis oceanica|type=CDS|length=1962bp|location=Sequence derived from alignment at scaffold_3:672131..674045- (Nannochloropsis oceanica)
CTTTTGGGAGGCCAATTACAATGAGTCGCGATGCAGTCTCTTTTGGCGCT
TCCTCGTCGCCAACGAAGGCCACCTTGCGCACGCAAAAGAGCAGCTGACC
AAGGACATAGCCTGGAGGGAGGATATAAAGCTCTATGAGCTGCAGGGCCG
AACACGCGAAGAAATAGTTGGCGTGGATGATGCTTTTTTCTTGGAGCAGT
ACCCGTGCATTTTCCTAGGCTACGAAGACGAAGCTAACAACTATGCTCCT
GTAGTGTATAGGAGTTTAACGCACTTGCAGACCAAGGCTTTGGCAGCAAA
GGGCGTGACAGTCGAGAAAATGGTCAAGCACGAGCTCTGGCAGTATGAGA
CGGATTGCAAGCTCTTGTTCTCGCATCCCGAAAGCTTCCCAGCTCGGCAA
CTTAAAGTTATCATTGACATTAATGGTATGACCTGGGGGCAATGCACCAA
AGACTTGGTGAGCATCCTCTCTGGATTTTCATCTTTCAGCAAGCTCCATC
ACCCTGAACGCCTGCAGAAGCTCTTCATTATTGGTGCGCCCAAACCATTT
CTCTTTATATGGAATACTATCATTTCACACATCATTCCGGTGAGTACCAA
GAATAAGATCACGATTCTACACACATTTGAAGGGCATCTGTGGCTGGAGG
CATGGATGGCGAAGCTCCCGGCAGCCTTGGAGGACGCAAAAGCCAAGGCA
GCATCAGCACCGACGGGGCCAAAATAAATGGAAGGTAGAGAAGCAGGAAG
AAGCTCCCAGCTTGAGTCAACAACGGCGCCACCATCCCAAAGAGAAAAAA
AGCAACAGCTGGACCAGGTGCAGCCTGCAACGACGCAGACGCATGAGACC
CCTGACCCCACGCTGGCCATAGGGAACTCGCCCCGCTTTTTGGGTGACCG
ACAGCCCCTTCCCGACGAGCTCCAGCTCCTAGAAGATTTTCAGCTCCTGC
TTGACGAGGGCCAAGTTGCGTTGCCGCGCAGCTTTTGGGAGGCCAATTAC
AATGAGTCGCGATGCAGTCTCTTTTGGCGCTTCCTCGTCGCCAACGAAGG
CCACCTTGCGCACGCAAAAGAGCAGCTGACCAAGGACATAGCCTGGAGGG
AGGATATAAAGCTCTATGAGCTGCAGGGCCGAACACGCGAAGAAATAGTT
GGCGTGGATGATGCTTTTTTCTTGGAGCAGTACCCGTGCATTTTCCTAGG
CTACGAAGACGAAGCTAACAACTATGCTCCTGTAGTGTATAGGAGTTTAA
CGCACTTGCAGACCAAGGCTTTGGCAGCAAAGGGCGTGACAGTCGAGAAA
ATGGTCAAGCACGAGCTCTGGCAGTATGAGACGGATTGCAAGCTCTTGTT
CTCGCATCCCGAAAGCTTCCCAGCTCGGCAACTTAAAGTTATCATTGACA
TTAATGGTATGACCTGGGGGCAATGCACCAAAGACTTGGTGAGCATCCTC
TCTGGATTTTCATCTTTCAGCAAGCTCCATCACCCTGAACGCCTGCAGAA
GCTCTTCATTATTGGTGCGCCCAAACCATTTCTCTTTATATGGAATACTA
TCATTTCACACATCATTCCGGTGAGTACCAAGAATAAGATCACGATTCTA
CACACATTTGAAGGGCATCTGTGGCTGGAGGCATGGATGGCGAAGCTCCC
GGCAGCCTTGGAGGACGCAAAAGCCAAGGCAGCATCAGCACCGACGGGGC
CAAAATAAATGGAAGGTAGAGAAGCAGGAAGAAGCTCCCAGCTTGAGTCA
ACAACGGCGCCACCATCCCAAAGAGAAAAAAAGCAACAGCTGGACCAGGT
GCAGCCTGCAACGACGCAGACGCATGAGACCCCTGACCCCACGCTGGCCA
TAGGGAACTCGCCCCGCTTTTTGGGTGACCGACAGCCCCTTCCCGACGAG
CTCCAGCTCCTAGAAGATTTTCAGCTCCTGCTTGACGAGGGCCAAGTTGC
GTTGCCGCGCAG
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Synonyms
Publications