jgi.p|Nanoce1779_2|668148, mRNA_27 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|668148
Unique Name	mRNA_27
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1474
Alignment location	scaffold_3:79679..81424 +

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Properties


Property Name	Value
TranscriptId	668234
Track	FilteredModels2
ProteinId	668148

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:79679..81424 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668148	gene_27	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668148	mRNA_27-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_27	CDS_27	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:79679..81424+
coding sequence from alignment at scaffold_3:79679..81424+

mRNA sequence

>mRNA_27 ID=mRNA_27|Name=jgi.p|Nanoce1779_2|668148|organism=Nannochloropsis oceanica|type=mRNA|length=1474bp
CCCCCTTCTCCCCCTCCTCCTTCTCCTTCTCCTTTTTTCCATGTGTCCAA
ACACTCAGCATCGCGCAGACGACGCCAGCAAGGCCCATCTGCTGTTCCTC
ATCTTCAAAAGTTTCACCTCCCCACTCCCCTACCAACCCCACTCCAGCAT
CTTTAATTTAATGTAGCACCACTTTGATTAACACCACAAAAACAGGCCAC
ATATCCCTTGGTATCTATTCCATTCGAAGAGAGCACCACATGAACCAATG
CGGAGCATCCAACTCAATCCACACACTTACAATACAGCCACGCAATCATG
GCCATGCCACTAGTTCTCACCCTCTTCTTCGGGGTACTCCTGGCCGTGGG
TATCGCATTGGTGGTCCTCCTCCTCCTCCCACTCGTCATCTACCTCATAA
GCCGCAAGCGCTACCCCACCCTTCCTTCTCAGGCGTCTAATGTCACGCTG
GGCGGCATAGTGGTCACCGGTGCCTCGACAGGTATAGGAAGACATGCAGC
CTTGTACCTGGCCCAACGAGGGTTTATTGTCTTTGCCGGCGTGCGCAAGC
CTGCAGATGGAGAGGCACTCCTACTTGCACATCAACAAGAGAAAAAAGAT
CATTCGACGAGCCAAACATCAGCCACAACGAGCAAAGGAGGTGTCCTCCA
CCCACTCATCCTCGACGTGACCAAAGCTGCCCAAATCACTGCTGCCTTGC
GCACTGTAAAAGAAGAGCTGGCCCGCCGAGGTAATTTGCCGTTTCTGGGA
CTCGTAAATAACGCAGGAGTAACTGGTGGGGCAGATCCCGTTGAGTACTT
GCCGCTGGACTACAACAGATATGCGTTCGAAGTTAATTACCACGGGCCTC
TGGCAGTAACGAAAGCGTTTCTTCTCCCTCTCCTCCGCCAAGAGCCCCAA
GGGCGGATTGTAAACGTGTCCAGCATGGCTGGGACGGTCACTCGTCCCTT
AGGCGCTACCTATTCCTGCACCAAATTCGCCTTGGAAGCCCTGAGTGATA
CTCTGCGGATGGAGCTCGGGCACCTAGGGGTCTCAGTCTCGGTGATTCAA
CCGGGCTATATCCACAGCGAGATATTTGGGAAAGCCACAGAGCAGCATGA
CCAGCGGATGCAAGAGCTGCCGGAGGAATGTGCGACGCTGTACGGCCATT
TGTATGCGCTCAAGAAGGTGGATAATTTGGTCGCTAAGGCCTCTGACCCA
GTTGTATGCTCGAAGGCCATCCACCATGCCTTGACCAGCGCGTATCCCCG
GACGAGATACCAGCCGGGAAACGTGAATGGCACGCCTGCATCCTTATTAA
GCTGGGGAATTTGGATATTGAACGACCGATTGCTGGATAGGGTGATAACA
CCGAGCCCGGCACAGAAGGGGGATCTCCAGATTGGTGTAGTGAAGAGAGA
CGGGGAGGACAAGGAGGAGGGAGGGGTGGAAGAGGGGAGGGAAGGGGGAA
ATGCGACGCAGTGAGATGGAATGG

protein sequence of jgi.p|Nanoce1779_2|668148

>mRNA_27-protein ID=mRNA_27-protein|Name=jgi.p|Nanoce1779_2|668148|organism=Nannochloropsis oceanica|type=polypeptide|length=389bp
MAMPLVLTLFFGVLLAVGIALVVLLLLPLVIYLISRKRYPTLPSQASNVT
LGGIVVTGASTGIGRHAALYLAQRGFIVFAGVRKPADGEALLLAHQQEKK
DHSTSQTSATTSKGGVLHPLILDVTKAAQITAALRTVKEELARRGNLPFL
GLVNNAGVTGGADPVEYLPLDYNRYAFEVNYHGPLAVTKAFLLPLLRQEP
QGRIVNVSSMAGTVTRPLGATYSCTKFALEALSDTLRMELGHLGVSVSVI
QPGYIHSEIFGKATEQHDQRMQELPEECATLYGHLYALKKVDNLVAKASD
PVVCSKAIHHALTSAYPRTRYQPGNVNGTPASLLSWGIWILNDRLLDRVI
TPSPAQKGDLQIGVVKRDGEDKEEGGVEEGREGGNATQ*

mRNA from alignment at scaffold_3:79679..81424+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_27 ID=mRNA_27|Name=jgi.p|Nanoce1779_2|668148|organism=Nannochloropsis oceanica|type=mRNA|length=1746bp|location=Sequence derived from alignment at scaffold_3:79679..81424+ (Nannochloropsis oceanica)
CCCCCTTCTCCCCCTCCTCCTTCTCCTTCTCCTTTTTTCCATGTGTCCAA
ACACTCAGCATCGCGCAGACGACGCCAGCAAGGCCCATCTGCTGTTCCTC
ATCTTCAAAAGTTTCACCTCCCCACTCCCCTACCAACCCCACTCCAGCAT
CTTTAATTTAATGTAGCACCACTTTGATTAACACCACAAAAACAGGCCAC
ATATCCCTTGGTATCTATTCCATTCGAAGAGAGCACCACATGAACCAATG
CGGAGCATCCAACTCAATCCACACACTTACAATACAGCCACGCAATCATG
GCCATGCCACTAGTTCTCACCCTCTTCTTCGGGGTACTCCTGGCCGTGGG
TATCGCATTGGTGGTCCTCCTCCTCCTCCCACTCGTCATCTACCTCATAA
GCCGCAAGCGCTACCCCACCCTTCCTTCTCAGGCGTCTAATGTCACGCTG
GGCGGCATAGTGGTCACCGGTGCCTCGACAGGTATAGGAAGACATGCAGC
CTTGTACCTGGCCCAACGAGGGTTTATTGTCTTTGCCGGCGTGCGCAAGC
CTGCAGATGGAGAGGCACTCCTACTTGCACATCAACAAGAGAAAAAAGAT
CATTCGACGAGCCAAACATCAGCCACAACGAGCAAAGGAGGTGTCCTCCA
CCCACTCATCCTCGACGTGACCAAAGCTGCCCAAATCACTGCTGCCTTGC
GCACTGTAAAAGAAGAGCTGGCCCGCCGAGGTAATTTGCCGTTTCTGGGA
CTCGTAAATAACGCAGGAGTAACTGGTGGGGCAGATCCCGTTGAGTACTT
GCCGCTGGACTACAACAGATATGCGTTCGAAGTTAATTACCACGGGCCTC
TGGCAGTAACGAAAGCGTTTCTTCTCCCTCTCCTCCGCCAAGAGCCCCAA
GGGCGGATTGTAAACGTGTCCAGCATGGCTGGGACGGTCACTCGTCCCTT
AGGCGCTACCTATTCCTGCACCAAATTCGCCTTGGAAGCCCTGAGTGATA
CTCTGCGGATGGAGCTCGGGCACCTAGGGGTCTCAGTCTCGGTGATTCAA
CCGGGCTATATCCACAGCGAGATATTTGGGAAAGCCACAGAGCAGCATGA
CCAGCGGATGCAAGAGCTGCCGGAGGAATGTGCGACGCTGTACGGCCATT
TGTATGCGCTCAAGAAGGTGGATAATTTGGTCGCTAAGGCCTCTGACCCA
GTTGTATGCTCGAAGGCCATCCACCATGCCTTGACCAGCGCGTATCCCCG
GGTATGATTTTGAGGGAAAGGAAGGGAAGGGAGGGGGAGCAAGCGAAATG
GGTGTCGATCATTAAGTGGCTGAAACTGTTGTGCAACCCATCCCATTTTT
GATTTTGGGATGGGTTTGATTCGATTCTTCCTTTTCATGGATGTCCGTTT
GCCTCGCCTACCGTATAAATACAGCAGTCACTCAAAGAGAGTGACCCTTC
ACGAAAACTCACCCGCTCTCTTCCTCCTTTCCCCCCCCTTCCCGCCTTCC
TTCATTCATTCCCTGTATAAAAGACGAGATACCAGCCGGGAAACGTGAAT
GGCACGCCTGCATCCTTATTAAGCTGGGGAATTTGGATATTGAACGACCG
ATTGCTGGATAGGGTGATAACACCGAGCCCGGCACAGAAGGGGGATCTCC
AGATTGGTGTAGTGAAGAGAGACGGGGAGGACAAGGAGGAGGGAGGGGTG
GAAGAGGGGAGGGAAGGGGGAAATGCGACGCAGTGAGATGGAATGG

Coding sequence (CDS) from alignment at scaffold_3:79679..81424+

>mRNA_27 ID=mRNA_27|Name=jgi.p|Nanoce1779_2|668148|organism=Nannochloropsis oceanica|type=CDS|length=2334bp|location=Sequence derived from alignment at scaffold_3:79679..81424+ (Nannochloropsis oceanica)
ATGGCCATGCCACTAGTTCTCACCCTCTTCTTCGGGGTACTCCTGGCCGT
GGGTATCGCATTGGTGGTCCTCCTCCTCCTCCCACTCGTCATCTACCTCA
TAAGCCGCAAGCGCTACCCCACCCTTCCTTCTCAGGCGTCTAATGTCACG
CTGGGCGGCATAGTGGTCACCGGTGCCTCGACAGGTATAGGAAGACATGC
AGCCTTGTACCTGGCCCAACGAGGGTTTATTGTCTTTGCCGGCGTGCGCA
AGCCTGCAGATGGAGAGGCACTCCTACTTGCACATCAACAAGAGAAAAAA
GATCATTCGACGAGCCAAACATCAGCCACAACGAGCAAAGGAGGTGTCCT
CCACCCACTCATCCTCGACGTGACCAAAGCTGCCCAAATCACTGCTGCCT
TGCGCACTGTAAAAGAAGAGCTGGCCCGCCGAGGTAATTTGCCGTTTCTG
GGACTCGTAAATAACGCAGGAGTAACTGGTGGGGCAGATCCCGTTGAGTA
CTTGCCGCTGGACTACAACAGATATGCGTTCGAAGTTAATTACCACGGGC
CTCTGGCAGTAACGAAAGCGTTTCTTCTCCCTCTCCTCCGCCAAGAGCCC
CAAGGGCGGATTGTAAACGTGTCCAGCATGGCTGGGACGGTCACTCGTCC
CTTAGGCGCTACCTATTCCTGCACCAAATTCGCCTTGGAAGCCCTGAGTG
ATACTCTGCGGATGGAGCTCGGGCACCTAGGGGTCTCAGTCTCGGTGATT
CAACCGGGCTATATCCACAGCGAGATATTTGGGAAAGCCACAGAGCAGCA
TGACCAGCGGATGCAAGAGCTGCCGGAGGAATGTGCGACGCTGTACGGCC
ATTTGTATGCGCTCAAGAAGGTGGATAATTTGGTCGCTAAGGCCTCTGAC
CCAGTTGTATGCTCGAAGGCCATCCACCATGCCTTGACCAGCGCGTATCC
CCGGACGAGATACCAGCCGGGAAACGTGAATGGCACGCCTGCATCCTTAT
TAAGCTGGGGAATTTGGATATTGAACGACCGATTGCTGGATAGGGTGATA
ACACCGAGCCCGGCACAGAAGGGGGATCTCCAGATTGGTGTAGTGAAGAG
AGACGGGGAGGACAAGGAGGAGGGAGGGGTGGAAGAGGGGAGGGAAGGGG
GAAATGCGACGCAGTGAATGGCCATGCCACTAGTTCTCACCCTCTTCTTC
GGGGTACTCCTGGCCGTGGGTATCGCATTGGTGGTCCTCCTCCTCCTCCC
ACTCGTCATCTACCTCATAAGCCGCAAGCGCTACCCCACCCTTCCTTCTC
AGGCGTCTAATGTCACGCTGGGCGGCATAGTGGTCACCGGTGCCTCGACA
GGTATAGGAAGACATGCAGCCTTGTACCTGGCCCAACGAGGGTTTATTGT
CTTTGCCGGCGTGCGCAAGCCTGCAGATGGAGAGGCACTCCTACTTGCAC
ATCAACAAGAGAAAAAAGATCATTCGACGAGCCAAACATCAGCCACAACG
AGCAAAGGAGGTGTCCTCCACCCACTCATCCTCGACGTGACCAAAGCTGC
CCAAATCACTGCTGCCTTGCGCACTGTAAAAGAAGAGCTGGCCCGCCGAG
GTAATTTGCCGTTTCTGGGACTCGTAAATAACGCAGGAGTAACTGGTGGG
GCAGATCCCGTTGAGTACTTGCCGCTGGACTACAACAGATATGCGTTCGA
AGTTAATTACCACGGGCCTCTGGCAGTAACGAAAGCGTTTCTTCTCCCTC
TCCTCCGCCAAGAGCCCCAAGGGCGGATTGTAAACGTGTCCAGCATGGCT
GGGACGGTCACTCGTCCCTTAGGCGCTACCTATTCCTGCACCAAATTCGC
CTTGGAAGCCCTGAGTGATACTCTGCGGATGGAGCTCGGGCACCTAGGGG
TCTCAGTCTCGGTGATTCAACCGGGCTATATCCACAGCGAGATATTTGGG
AAAGCCACAGAGCAGCATGACCAGCGGATGCAAGAGCTGCCGGAGGAATG
TGCGACGCTGTACGGCCATTTGTATGCGCTCAAGAAGGTGGATAATTTGG
TCGCTAAGGCCTCTGACCCAGTTGTATGCTCGAAGGCCATCCACCATGCC
TTGACCAGCGCGTATCCCCGGACGAGATACCAGCCGGGAAACGTGAATGG
CACGCCTGCATCCTTATTAAGCTGGGGAATTTGGATATTGAACGACCGAT
TGCTGGATAGGGTGATAACACCGAGCCCGGCACAGAAGGGGGATCTCCAG
ATTGGTGTAGTGAAGAGAGACGGGGAGGACAAGGAGGAGGGAGGGGTGGA
AGAGGGGAGGGAAGGGGGAAATGCGACGCAGTGA

Synonyms

Publications