Properties
| Property Name | Value |
|---|
| TranscriptId | 581314 |
| Track | FilteredModels2 |
| ProteinId | 581228 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:962107..964976 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2699 ID=mRNA_2699|Name=jgi.p|Nanoce1779_2|581228|organism=Nannochloropsis oceanica|type=mRNA|length=2560bp
AGGAATGGCCCCTATGCGCATCCTTGCGGCCTCGGCTGCCGCTGCCGCCG
TTGCAGCACCTTTAGCCTCTGGGTTTTACTTGCCCGGCGTGGCCCCGACC
AACTTTGTGGAGGGCCAGCGCGTAGAGCTCAAGGTGAACAAGATCACCTC
CTCGCAAACCCAAATCCCCTACGACTACTACTCCTTTCCCTTTTGTCGCC
CAGCCAATGGCGTGCACCACTACGGCGAGAATCTGGGCGAGTTCCTCACG
GGTGACCGGATAGAAAACAGCCCCTACGAGCTTCAAATGAAGGTTGATCA
ATCCTGTACGCTCCTGTGCTCACAAACCTTGACGAAGAAGGACGTCAGCA
AGTTGAAGGAGGCGATTCTGGAGGGGTACAGTCATAATTGGATTATTGAT
AACTTGCCGGCGGCATCTGTGATGGTGGACGATGTGTACCAGACCACCTA
CTACTCGCGTGGCTTCCTGGTGGGGCTGACGGACGAGAAGCAAGAGGTCT
TCGCCTTGCATAACCACGTGAGGATTTATCTGGATTATCACCGGGTGGAT
GGGCAGGATGCGTTCCGCGTGGTGGGGTTCCGTGTCCGTCCTTTTTCGAT
CGACCATAAACTCGGGGAGGGCGCGACTCCGTCCCTGACCACCTGTGAGG
CCCTCGAAAGTGGGACGGCCGGCCCGGCAGAGATCAAGGACGGGGCAGTG
GTCCACTTTTCCTATGACGTGCAGTGGGAGGCGAGTGACGTCCGATGGGC
TTCTCGATGGGACATCTACCTCAACATGGATCACACCAAGACGGATAAGG
TGCATTGGTTCTCCATCGCCAATTCGGCGTTGATCGTTTTGTTTTTGACG
GGAATGATCGCCATGATTTTGATCCGGAATTTGTGTCGGGATATTACGAG
GTATAACCGCGTACCGACCGAGGAGGATCGGGCCGAGGAGCGGGAAGAGA
GCGGGTGGAAGCTGGTGCATGCCGATGTCTTCCGTCCCCCCACCTCTCAC
CCACTGCTCTTGTCTGTGATGGTGGGCACAGGGGCCCAGCTTTTGATGAT
GGCTTTCTTCACCATTGTTTTTGCTGCCGTCGGTTTCCTTTCTCCGGCAA
ATCGTGGGTCGTTGATGATTGCTGTTTTGCTCACCTACGTCCTGATGGGA
TCGGTGGCTGGCTTTGTTTCCGCGCGACTCTACAAGACGTTCAAGGGAAA
GCAATGGCAAAAATGCACGGTCTTCACAGCGTTGTGGTATCCGTCCATCT
GCTTCACCGTCTTCCTCTGCTTGGATTTCATTGACGTCTCCTACGGATCC
TCGGGTGCTGTGCCGTTTCTCGAGATGTTGAAGTTGCTAACGCTCTGGTT
CGGCATTAGTGTACCCCTTGTTTTCATGGGGGCGTATCTGGGCTACAAGC
GCGATGCAATTACCTTCCCTGTCGTGACCTCCAACATCCCGAGGGAGATC
CCTGATCAGCCTTGGTATTTGTCAAGGTCTTTTGTAATCCTGGCGGGGGG
GATTTTGCCTTTCGGTGCTTGTTTTGTGGAGTTGTTTTTCATCTTGACCA
GCATGTGGTTGGGGGCTTACTACTATGTGTTTGGATTCCTGTTGCTAGTC
TTTACGATCCTACTGGTCACTTGCGCGGAGATCACGATTGTCATGACCTA
CTTTCAGTTGTGTAATGAGGACTACAACTGGTGGTGGCGTTCCTTCCTTT
CCTCGGGGTCGACTGCGATGTATGTCTTATTGTACTCTGCTGTGTATTTC
ACCAATATTGTCCAGCCGAATTTGTTCGCGACCTACCTGCTGTATTTTGG
ATACATGAGCATTATCTCCCTGGGCATGTTCTTGATGACGGGCTGCATTG
GCTTTGCCGCCAGCTTATGGTTCAACCGACTGATTTTCTCGTCGATCAAG
GTGGATTAATTTTTTTTTTCAAGGAGCGGGATAGGAGGAAGAGAGTTAAT
TGTCTGTTTTAGGAAGAGTGTGTCAGGAAAATGAATTGGCAAGGAAACGC
GATCCCTGGGGATTGGAGGGTGGTGGGAATTGGAAAAGAAACACCGTAAC
GACCGACCACAATCAACGCCCTCAGTGAGGAGAAGCATATGGCACAAAAA
CCAGCGAAACGCAAAGCTTAGGTCTTCTGCTCTTAAGTCATTATTCTTAT
TATTGTGATTATGACATAGACAATGCCCCCTCAAATTCATTCATTTACAG
AAATACCAAGAAGAGGAGGGGGGAAGGGAAGAAAGAAAAGAATTGATCGT
CCCCTCCTTAAAAAAGAAAAGAAACAAGAAAGACAGAGAGAATATGCGAG
TGTTGGTGCTCGTTTTGGTTAGTTCGTGTCTCGTTGGAAGTCACAGGCGT
TACATCCAGACAACAGGAATCCAGAAGCAAGGAGCGATTTCTTTCCTGCC
TCTTCTATACCTTGCCACCCACATCCAGATGGCCCAGGCGCACGACCGCC
ACCCCACATAACCGAACAGAACACCAAATCGACAGTCCCAAAAGAACGCA
AAGAAACTGATCCAATGGCAAAGAAAGACTTCACTCGTAACTCGAAGCTC
TTTATTTTTA back to topprotein sequence of jgi.p|Nanoce1779_2|581228 >mRNA_2699-protein ID=mRNA_2699-protein|Name=jgi.p|Nanoce1779_2|581228|organism=Nannochloropsis oceanica|type=polypeptide|length=635bp
MAPMRILAASAAAAAVAAPLASGFYLPGVAPTNFVEGQRVELKVNKITSS
QTQIPYDYYSFPFCRPANGVHHYGENLGEFLTGDRIENSPYELQMKVDQS
CTLLCSQTLTKKDVSKLKEAILEGYSHNWIIDNLPAASVMVDDVYQTTYY
SRGFLVGLTDEKQEVFALHNHVRIYLDYHRVDGQDAFRVVGFRVRPFSID
HKLGEGATPSLTTCEALESGTAGPAEIKDGAVVHFSYDVQWEASDVRWAS
RWDIYLNMDHTKTDKVHWFSIANSALIVLFLTGMIAMILIRNLCRDITRY
NRVPTEEDRAEEREESGWKLVHADVFRPPTSHPLLLSVMVGTGAQLLMMA
FFTIVFAAVGFLSPANRGSLMIAVLLTYVLMGSVAGFVSARLYKTFKGKQ
WQKCTVFTALWYPSICFTVFLCLDFIDVSYGSSGAVPFLEMLKLLTLWFG
ISVPLVFMGAYLGYKRDAITFPVVTSNIPREIPDQPWYLSRSFVILAGGI
LPFGACFVELFFILTSMWLGAYYYVFGFLLLVFTILLVTCAEITIVMTYF
QLCNEDYNWWWRSFLSSGSTAMYVLLYSAVYFTNIVQPNLFATYLLYFGY
MSIISLGMFLMTGCIGFAASLWFNRLIFSSIKVD* back to topmRNA from alignment at scaffold_5:962107..964976+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2699 ID=mRNA_2699|Name=jgi.p|Nanoce1779_2|581228|organism=Nannochloropsis oceanica|type=mRNA|length=2870bp|location=Sequence derived from alignment at scaffold_5:962107..964976+ (Nannochloropsis oceanica)
AGGAATGGCCCCTATGCGCATCCTTGCGGCCTCGGCTGCCGCTGCCGCCG
TTGCAGCACCTTTAGCCTCTGGGTTTTACTTGCCCGGCGTGGCCCCGACC
AACTTTGTGGAGGGCCAGCGCGTAGAGCTCAAGGTAGGTTCAGACTCCGC
CTACAAGTGGAAGCGAGGGAGGGACTACGTGATGTGGGTTGTGTGAGTCG
GTGGATGTGGCCAAGTGATGGTTGCGTGTTGCGTCCCTACTAGGTGTCCC
TCACGTTGTCTCCACCCCTGCCCATGTGGAAACCATCGTCATGAAAGGAA
TCAATCTCAATGATGGCTTGACCCCTCGGCCCCTCCTTCCCTCTCTACAG
GTGCCCCCCCACCCCCCCTCTCTGATCGCAAGCATCATTCTTCTCTAAAC
CTCACACAATTTCCTCCCTCCATTTTCCCTCACTCCCTACCAGGTGAACA
AGATCACCTCCTCGCAAACCCAAATCCCCTACGACTACTACTCCTTTCCC
TTTTGTCGCCCAGCCAATGGCGTGCACCACTACGGCGAGAATCTGGGCGA
GTTCCTCACGGGTGACCGGATAGAAAACAGCCCCTACGAGCTTCAAATGA
AGGTTGATCAATCCTGTACGCTCCTGTGCTCACAAACCTTGACGAAGAAG
GACGTCAGCAAGTTGAAGGAGGCGATTCTGGAGGGGTACAGTCATAATTG
GATTATTGATAACTTGCCGGCGGCATCTGTGATGGTGGACGATGTGTACC
AGACCACCTACTACTCGCGTGGCTTCCTGGTGGGGCTGACGGACGAGAAG
CAAGAGGTCTTCGCCTTGCATAACCACGTGAGGATTTATCTGGATTATCA
CCGGGTGGATGGGCAGGATGCGTTCCGCGTGGTGGGGTTCCGTGTCCGTC
CTTTTTCGATCGACCATAAACTCGGGGAGGGCGCGACTCCGTCCCTGACC
ACCTGTGAGGCCCTCGAAAGTGGGACGGCCGGCCCGGCAGAGATCAAGGA
CGGGGCAGTGGTCCACTTTTCCTATGACGTGCAGTGGGAGGCGAGTGACG
TCCGATGGGCTTCTCGATGGGACATCTACCTCAACATGGATCACACCAAG
ACGGATAAGGTGCATTGGTTCTCCATCGCCAATTCGGCGTTGATCGTTTT
GTTTTTGACGGGAATGATCGCCATGATTTTGATCCGGAATTTGTGTCGGG
ATATTACGAGGTATAACCGCGTACCGACCGAGGAGGATCGGGCCGAGGAG
CGGGAAGAGAGCGGGTGGAAGCTGGTGCATGCCGATGTCTTCCGTCCCCC
CACCTCTCACCCACTGCTCTTGTCTGTGATGGTGGGCACAGGGGCCCAGC
TTTTGATGATGGCTTTCTTCACCATTGTTTTTGCTGCCGTCGGTTTCCTT
TCTCCGGCAAATCGTGGGTCGTTGATGATTGCTGTTTTGCTCACCTACGT
CCTGATGGGATCGGTGGCTGGCTTTGTTTCCGCGCGACTCTACAAGACGT
TCAAGGGAAAGCAATGGCAAAAATGCACGGTCTTCACAGCGTTGTGGTAT
CCGTCCATCTGCTTCACCGTCTTCCTCTGCTTGGATTTCATTGACGTCTC
CTACGGATCCTCGGGTGCTGTGCCGTTTCTCGAGATGTTGAAGTTGCTAA
CGCTCTGGTTCGGCATTAGTGTACCCCTTGTTTTCATGGGGGCGTATCTG
GGCTACAAGCGCGATGCAATTACCTTCCCTGTCGTGACCTCCAACATCCC
GAGGGAGATCCCTGATCAGCCTTGGTATTTGTCAAGGTCTTTTGTAATCC
TGGCGGGGGGGATTTTGCCTTTCGGTGCTTGTTTTGTGGAGTTGTTTTTC
ATCTTGACCAGCATGTGGTTGGGGGCTTACTACTATGTGTTTGGATTCCT
GTTGCTAGTCTTTACGATCCTACTGGTCACTTGCGCGGAGATCACGATTG
TCATGACCTACTTTCAGTTGTGTAATGAGGACTACAACTGGTGGTGGCGT
TCCTTCCTTTCCTCGGGGTCGACTGCGATGTATGTCTTATTGTACTCTGC
TGTGTATTTCACCAATATTGTCCAGCCGAATTTGTTCGCGACCTACCTGC
TGTATTTTGGATACATGAGCATTATCTCCCTGGGCATGTTCTTGATGACG
GGCTGCATTGGCTTTGCCGCCAGCTTATGGTTCAACCGACTGATTTTCTC
GTCGATCAAGGTGGATTAATTTTTTTTTTCAAGGAGCGGGATAGGAGGAA
GAGAGTTAATTGTCTGTTTTAGGAAGAGTGTGTCAGGAAAATGAATTGGC
AAGGAAACGCGATCCCTGGGGATTGGAGGGTGGTGGGAATTGGAAAAGAA
ACACCGTAACGACCGACCACAATCAACGCCCTCAGTGAGGAGAAGCATAT
GGCACAAAAACCAGCGAAACGCAAAGCTTAGGTCTTCTGCTCTTAAGTCA
TTATTCTTATTATTGTGATTATGACATAGACAATGCCCCCTCAAATTCAT
TCATTTACAGAAATACCAAGAAGAGGAGGGGGGAAGGGAAGAAAGAAAAG
AATTGATCGTCCCCTCCTTAAAAAAGAAAAGAAACAAGAAAGACAGAGAG
AATATGCGAGTGTTGGTGCTCGTTTTGGTTAGTTCGTGTCTCGTTGGAAG
TCACAGGCGTTACATCCAGACAACAGGAATCCAGAAGCAAGGAGCGATTT
CTTTCCTGCCTCTTCTATACCTTGCCACCCACATCCAGATGGCCCAGGCG
CACGACCGCCACCCCACATAACCGAACAGAACACCAAATCGACAGTCCCA
AAAGAACGCAAAGAAACTGATCCAATGGCAAAGAAAGACTTCACTCGTAA
CTCGAAGCTCTTTATTTTTA back to topCoding sequence (CDS) from alignment at scaffold_5:962107..964976+ >mRNA_2699 ID=mRNA_2699|Name=jgi.p|Nanoce1779_2|581228|organism=Nannochloropsis oceanica|type=CDS|length=3810bp|location=Sequence derived from alignment at scaffold_5:962107..964976+ (Nannochloropsis oceanica)
ATGGCCCCTATGCGCATCCTTGCGGCCTCGGCTGCCGCTGCCGCCGTTGC
AGCACCTTTAGCCTCTGGGTTTTACTTGCCCGGCGTGGCCCCGACCAACT
TTGTGGAGGGCCAGCGCGTAGAGCTCAAGGTGAACAAGATCACCTCCTCG
CAAACCCAAATCCCCTACGACTACTACTCCTTTCCCTTTTGTCGCCCAGC
CAATGGCGTGCACCACTACGGCGAGAATCTGGGCGAGTTCCTCACGGGTG
ACCGGATAGAAAACAGCCCCTACGAGCTTCAAATGAAGGTTGATCAATCC
TGTACGCTCCTGTGCTCACAAACCTTGACGAAGAAGGACGTCAGCAAGTT
GAAGGAGGCGATTCTGGAGGGGTACAGTCATAATTGGATTATTGATAACT
TGCCGGCGGCATCTGTGATGGTGGACGATGTGTACCAGACCACCTACTAC
TCGCGTGGCTTCCTGGTGGGGCTGACGGACGAGAAGCAAGAGGTCTTCGC
CTTGCATAACCACGTGAGGATTTATCTGGATTATCACCGGGTGGATGGGC
AGGATGCGTTCCGCGTGGTGGGGTTCCGTGTCCGTCCTTTTTCGATCGAC
CATAAACTCGGGGAGGGCGCGACTCCGTCCCTGACCACCTGTGAGGCCCT
CGAAAGTGGGACGGCCGGCCCGGCAGAGATCAAGGACGGGGCAGTGGTCC
ACTTTTCCTATGACGTGCAGTGGGAGGCGAGTGACGTCCGATGGGCTTCT
CGATGGGACATCTACCTCAACATGGATCACACCAAGACGGATAAGGTGCA
TTGGTTCTCCATCGCCAATTCGGCGTTGATCGTTTTGTTTTTGACGGGAA
TGATCGCCATGATTTTGATCCGGAATTTGTGTCGGGATATTACGAGGTAT
AACCGCGTACCGACCGAGGAGGATCGGGCCGAGGAGCGGGAAGAGAGCGG
GTGGAAGCTGGTGCATGCCGATGTCTTCCGTCCCCCCACCTCTCACCCAC
TGCTCTTGTCTGTGATGGTGGGCACAGGGGCCCAGCTTTTGATGATGGCT
TTCTTCACCATTGTTTTTGCTGCCGTCGGTTTCCTTTCTCCGGCAAATCG
TGGGTCGTTGATGATTGCTGTTTTGCTCACCTACGTCCTGATGGGATCGG
TGGCTGGCTTTGTTTCCGCGCGACTCTACAAGACGTTCAAGGGAAAGCAA
TGGCAAAAATGCACGGTCTTCACAGCGTTGTGGTATCCGTCCATCTGCTT
CACCGTCTTCCTCTGCTTGGATTTCATTGACGTCTCCTACGGATCCTCGG
GTGCTGTGCCGTTTCTCGAGATGTTGAAGTTGCTAACGCTCTGGTTCGGC
ATTAGTGTACCCCTTGTTTTCATGGGGGCGTATCTGGGCTACAAGCGCGA
TGCAATTACCTTCCCTGTCGTGACCTCCAACATCCCGAGGGAGATCCCTG
ATCAGCCTTGGTATTTGTCAAGGTCTTTTGTAATCCTGGCGGGGGGGATT
TTGCCTTTCGGTGCTTGTTTTGTGGAGTTGTTTTTCATCTTGACCAGCAT
GTGGTTGGGGGCTTACTACTATGTGTTTGGATTCCTGTTGCTAGTCTTTA
CGATCCTACTGGTCACTTGCGCGGAGATCACGATTGTCATGACCTACTTT
CAGTTGTGTAATGAGGACTACAACTGGTGGTGGCGTTCCTTCCTTTCCTC
GGGGTCGACTGCGATGTATGTCTTATTGTACTCTGCTGTGTATTTCACCA
ATATTGTCCAGCCGAATTTGTTCGCGACCTACCTGCTGTATTTTGGATAC
ATGAGCATTATCTCCCTGGGCATGTTCTTGATGACGGGCTGCATTGGCTT
TGCCGCCAGCTTATGGTTCAACCGACTGATTTTCTCGTCGATCAAGGTGG
ATTAAATGGCCCCTATGCGCATCCTTGCGGCCTCGGCTGCCGCTGCCGCC
GTTGCAGCACCTTTAGCCTCTGGGTTTTACTTGCCCGGCGTGGCCCCGAC
CAACTTTGTGGAGGGCCAGCGCGTAGAGCTCAAGGTGAACAAGATCACCT
CCTCGCAAACCCAAATCCCCTACGACTACTACTCCTTTCCCTTTTGTCGC
CCAGCCAATGGCGTGCACCACTACGGCGAGAATCTGGGCGAGTTCCTCAC
GGGTGACCGGATAGAAAACAGCCCCTACGAGCTTCAAATGAAGGTTGATC
AATCCTGTACGCTCCTGTGCTCACAAACCTTGACGAAGAAGGACGTCAGC
AAGTTGAAGGAGGCGATTCTGGAGGGGTACAGTCATAATTGGATTATTGA
TAACTTGCCGGCGGCATCTGTGATGGTGGACGATGTGTACCAGACCACCT
ACTACTCGCGTGGCTTCCTGGTGGGGCTGACGGACGAGAAGCAAGAGGTC
TTCGCCTTGCATAACCACGTGAGGATTTATCTGGATTATCACCGGGTGGA
TGGGCAGGATGCGTTCCGCGTGGTGGGGTTCCGTGTCCGTCCTTTTTCGA
TCGACCATAAACTCGGGGAGGGCGCGACTCCGTCCCTGACCACCTGTGAG
GCCCTCGAAAGTGGGACGGCCGGCCCGGCAGAGATCAAGGACGGGGCAGT
GGTCCACTTTTCCTATGACGTGCAGTGGGAGGCGAGTGACGTCCGATGGG
CTTCTCGATGGGACATCTACCTCAACATGGATCACACCAAGACGGATAAG
GTGCATTGGTTCTCCATCGCCAATTCGGCGTTGATCGTTTTGTTTTTGAC
GGGAATGATCGCCATGATTTTGATCCGGAATTTGTGTCGGGATATTACGA
GGTATAACCGCGTACCGACCGAGGAGGATCGGGCCGAGGAGCGGGAAGAG
AGCGGGTGGAAGCTGGTGCATGCCGATGTCTTCCGTCCCCCCACCTCTCA
CCCACTGCTCTTGTCTGTGATGGTGGGCACAGGGGCCCAGCTTTTGATGA
TGGCTTTCTTCACCATTGTTTTTGCTGCCGTCGGTTTCCTTTCTCCGGCA
AATCGTGGGTCGTTGATGATTGCTGTTTTGCTCACCTACGTCCTGATGGG
ATCGGTGGCTGGCTTTGTTTCCGCGCGACTCTACAAGACGTTCAAGGGAA
AGCAATGGCAAAAATGCACGGTCTTCACAGCGTTGTGGTATCCGTCCATC
TGCTTCACCGTCTTCCTCTGCTTGGATTTCATTGACGTCTCCTACGGATC
CTCGGGTGCTGTGCCGTTTCTCGAGATGTTGAAGTTGCTAACGCTCTGGT
TCGGCATTAGTGTACCCCTTGTTTTCATGGGGGCGTATCTGGGCTACAAG
CGCGATGCAATTACCTTCCCTGTCGTGACCTCCAACATCCCGAGGGAGAT
CCCTGATCAGCCTTGGTATTTGTCAAGGTCTTTTGTAATCCTGGCGGGGG
GGATTTTGCCTTTCGGTGCTTGTTTTGTGGAGTTGTTTTTCATCTTGACC
AGCATGTGGTTGGGGGCTTACTACTATGTGTTTGGATTCCTGTTGCTAGT
CTTTACGATCCTACTGGTCACTTGCGCGGAGATCACGATTGTCATGACCT
ACTTTCAGTTGTGTAATGAGGACTACAACTGGTGGTGGCGTTCCTTCCTT
TCCTCGGGGTCGACTGCGATGTATGTCTTATTGTACTCTGCTGTGTATTT
CACCAATATTGTCCAGCCGAATTTGTTCGCGACCTACCTGCTGTATTTTG
GATACATGAGCATTATCTCCCTGGGCATGTTCTTGATGACGGGCTGCATT
GGCTTTGCCGCCAGCTTATGGTTCAACCGACTGATTTTCTCGTCGATCAA
GGTGGATTAA back to top
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