jgi.p|Nanoce1779_2|581226, mRNA_2698 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581226
Unique Name	mRNA_2698
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1327
Alignment location	scaffold_5:959743..961550 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581312
Track	FilteredModels2
ProteinId	581226

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:959743..961550 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581226	gene_2698	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581226	mRNA_2698-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2698	CDS_2698	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:959743..961550+
coding sequence from alignment at scaffold_5:959743..961550+

mRNA sequence

>mRNA_2698 ID=mRNA_2698|Name=jgi.p|Nanoce1779_2|581226|organism=Nannochloropsis oceanica|type=mRNA|length=1327bp
AGGAGAGGGAAAGCAGCAGAGGAGGCAGCAGCAGCATTCCTCTCCCTGCC
TTAAGTCATGAACGACCTGGTTTACCACCCCAGGCAAACTCCTCGGGGCC
CACCCATCCCGGGTTTCAAACAAGCCTTCTATCCATTGCTTCGCTTTATT
TTCAACAACCCTATTTATACTGGTGTGATATTCTACGCCTTCTTCATCAG
CATTCGCCACCTCCGCACAGCAGGGAAGCAACGTGGCCCATTCATCTGGC
AGGTTAAGGGCGCTTCCTCGTCCCACAAGGGCTCATGTTTCTGTTCAGCT
GTTGACGACTCCTGCTGGTGTGGACCTTCTTTGGGTGTGGACACGATTCT
GGAGTACAGCGAGAAGGAGAATGAGCCAGTGACGGCGTTGGTATTCATCA
AGCGGAAGGATGGGAGAGGGATGTCGTGTGTGGGTGGCTTTGTACAGCTC
GGCGAAACCGTGGAGGAAGCCGTTAACCGCAAAGTCCAAGAAGAGATCGG
CACTACCTCACTCAACGCCCTCCGTCTGCTTGGCGTGTACAGCCACTCTG
AACGCGACGATCGGCGACACACCGCCAGTGCTGTATTTGTGGGGAAGGTG
CACGGAAAATTCAAAGCGGGGGATGACGCCAAGGTCGTGTCTGTGATTCC
CTTGCAAGCGATGAATGTAGAATTGATTAGGTTGTCGTTTGACCATAATC
ACATTTTGAAAGATTACTGGTATTCATTGAAGGAGACGGTGGTGGAGCGG
AACCTCATGCCAAGACAGGGCACGAGCCTTTGCCCGGCCCCACCGAGGGA
TGAAGACCGAAAGTAGTTGGAGAGAAATGAACCCACAAAGTCATGAAGTT
GAACACAATGCCAAAAGTACAATTATTCAACAGATATCCCATGGACTGTT
TTGGTGCTCGATGCTTTTCGTTTGCGATGCGCTCTCCAGGTCAGCAATCA
GCAGCAGCATTACACACTACCCTCCTCTTTCCCTCTCTTCCTCACTCCTT
TCATCTCAACTCCACCATTGGCCTCAGTGTCTTAGTAGGACTTGTGGGGA
GTAGCGGGCAGCTGGGAAAGTAGATAATTCGTTGTCGCCTTTTTAAAAAC
TGGACATCTCAAAACAATGGCTACAGCAGAGCCAGGCCATGGGTGCTGGG
CGGATTTTACTTGTTCAGGGAATCCAGGGATGTTTGTTCCGAGCACGTTA
ATATACATATTCTGGCCCTACGAAAGGGATATACAGACAATTGACTAAGG
TAAAGAAGTCCTACGAACAGAAGAATTGCAAAAAAGGAAGAAAATAAAGC
CAAAACAAAGGAAAGATCGAGTCAATG

protein sequence of jgi.p|Nanoce1779_2|581226

>mRNA_2698-protein ID=mRNA_2698-protein|Name=jgi.p|Nanoce1779_2|581226|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MNDLVYHPRQTPRGPPIPGFKQAFYPLLRFIFNNPIYTGVIFYAFFISIR
HLRTAGKQRGPFIWQVKGASSSHKGSCFCSAVDDSCWCGPSLGVDTILEY
SEKENEPVTALVFIKRKDGRGMSCVGGFVQLGETVEEAVNRKVQEEIGTT
SLNALRLLGVYSHSERDDRRHTASAVFVGKVHGKFKAGDDAKVVSVIPLQ
AMNVELIRLSFDHNHILKDYWYSLKETVVERNLMPRQGTSLCPAPPRDED
RK*

mRNA from alignment at scaffold_5:959743..961550+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2698 ID=mRNA_2698|Name=jgi.p|Nanoce1779_2|581226|organism=Nannochloropsis oceanica|type=mRNA|length=1808bp|location=Sequence derived from alignment at scaffold_5:959743..961550+ (Nannochloropsis oceanica)
AGGAGAGGGAAAGCAGCAGAGGAGGCAGCAGCAGCATTCCTCTCCCTGCC
TTAAGTCATGAACGACCTGGTTTACCACCCCAGGCAAACTCCTCGGGGCC
CACCCATCCCGGGTTTCAAACAAGCCTTCTATCCATTGCTTCGCTTTATT
TTCAACAACCCTATTTATACTGGTACGTGGGAGGGGGAAGAAATTGAGTA
AAGAGTGGGAGAGATATTGCCGCCCAAGCGGATGGGGATTACGAGGAAAG
AGGGATGGATGCGTAGCTTGCGTGTGCGCGCATTTTTTCCCTTGTTTGAT
CTATTGCACTGATTGTGGGAACCGAAGCTTGGCCGTGAGGTCCAGGCCGC
GGCATGCCTTCTTATGCCCACCCATATTCGGAGGGAAAGGTTCCTGTCTT
GTTGCTTTATAGCCCTTCCACACTCACTTCCAACCCCCGCCTCTCCCTTC
AAGGTGTGATATTCTACGCCTTCTTCATCAGCATTCGCCACCTCCGCACA
GCAGGGAAGCAACGTGGCCCATTCATCTGGCAGGTTAAGGGCGCTTCCTC
GTCCCACAAGGGCTCATGTTTCTGTTCAGCTGTTGACGACTCCTGCTGGT
GTGGACCTTCTTTGGGTGTGGACACGATTCTGGAGTACAGCGAGAAGGAG
AATGAGCCAGTGACGGCGTTGGTATTCATCAAGCGGAAGGATGGGAGAGG
GATGTCGTGTGTGGGTGGCTTTGTACAGCTCGGTGAGTTTGAATTTGGGA
GGAGGGAGGAGAGGGAGGGAAAGAGGAGGGGGATATGGACGGGTAGGAGG
GGTGCCGAAAGGAGGTTTAGTGGTCTTAAAAGGAGAAGGCGACGTTGCGG
CTCTCTGTTGGGTGACTTTCTTTCCTTACTGCCTTCCCTCCCCTCCCTCC
CTCCCGCACCTCCCTTTCAATTTCCCCCTCAGGCGAAACCGTGGAGGAAG
CCGTTAACCGCAAAGTCCAAGAAGAGATCGGCACTACCTCACTCAACGCC
CTCCGTCTGCTTGGCGTGTACAGCCACTCTGAACGCGACGATCGGCGACA
CACCGCCAGTGCTGTATTTGTGGGGAAGGTGCACGGAAAATTCAAAGCGG
GGGATGACGCCAAGGTCGTGTCTGTGATTCCCTTGCAAGCGATGAATGTA
GAATTGATTAGGTTGTCGTTTGACCATAATCACATTTTGAAAGATTACTG
GTATTCATTGAAGGAGACGGTGGTGGAGCGGAACCTCATGCCAAGACAGG
GCACGAGCCTTTGCCCGGCCCCACCGAGGGATGAAGACCGAAAGTAGTTG
GAGAGAAATGAACCCACAAAGTCATGAAGTTGAACACAATGCCAAAAGTA
CAATTATTCAACAGATATCCCATGGACTGTTTTGGTGCTCGATGCTTTTC
GTTTGCGATGCGCTCTCCAGGTCAGCAATCAGCAGCAGCATTACACACTA
CCCTCCTCTTTCCCTCTCTTCCTCACTCCTTTCATCTCAACTCCACCATT
GGCCTCAGTGTCTTAGTAGGACTTGTGGGGAGTAGCGGGCAGCTGGGAAA
GTAGATAATTCGTTGTCGCCTTTTTAAAAACTGGACATCTCAAAACAATG
GCTACAGCAGAGCCAGGCCATGGGTGCTGGGCGGATTTTACTTGTTCAGG
GAATCCAGGGATGTTTGTTCCGAGCACGTTAATATACATATTCTGGCCCT
ACGAAAGGGATATACAGACAATTGACTAAGGTAAAGAAGTCCTACGAACA
GAAGAATTGCAAAAAAGGAAGAAAATAAAGCCAAAACAAAGGAAAGATCG
AGTCAATG

Coding sequence (CDS) from alignment at scaffold_5:959743..961550+

>mRNA_2698 ID=mRNA_2698|Name=jgi.p|Nanoce1779_2|581226|organism=Nannochloropsis oceanica|type=CDS|length=2277bp|location=Sequence derived from alignment at scaffold_5:959743..961550+ (Nannochloropsis oceanica)
ATGAACGACCTGGTTTACCACCCCAGGCAAACTCCTCGGGGCCCACCCAT
CCCGGGTTTCAAACAAGCCTTCTATCCATTGCTTCGCTTTATTTTCAACA
ACCCTATTTATACTGGTGTGATATTCTACGCCTTCTTCATCAGCATTCGC
CACCTCCGCACAGCAGGGAAGCAACGTGGCCCATTCATCTGGCAGGTTAA
GGGCGCTTCCTCGTCCCACAAGGGCTCATGTTTCTGTTCAGCTGTTGACG
ACTCCTGCTGGTGTGGACCTTCTTTGGGTGTGGACACGATTCTGGAGTAC
AGCGAGAAGGAGAATGAGCCAGTGACGGCGTTGGTATTCATCAAGCGGAA
GGATGGGAGAGGGATGTCGTGTGTGGGTGGCTTTGTACAGCTCGGCGAAA
CCGTGGAGGAAGCCGTTAACCGCAAAGTCCAAGAAGAGATCGGCACTACC
TCACTCAACGCCCTCCGTCTGCTTGGCGTGTACAGCCACTCTGAACGCGA
CGATCGGCGACACACCGCCAGTGCTGTATTTGTGGGGAAGGTGCACGGAA
AATTCAAAGCGGGGGATGACGCCAAGGTCGTGTCTGTGATTCCCTTGCAA
GCGATGAATGTAGAATTGATTAGGTTGTCGTTTGACCATAATCACATTTT
GAAAGATTACTGGTATTCATTGAAGGAGACGGTGGTGGAGCGGAACCTCA
TGCCAAGACAGGGCACGAGCCTTTGCCCGGCCCCACCGAGGGATGAAGAC
CGAAAGTAGATGAACGACCTGGTTTACCACCCCAGGCAAACTCCTCGGGG
CCCACCCATCCCGGGTTTCAAACAAGCCTTCTATCCATTGCTTCGCTTTA
TTTTCAACAACCCTATTTATACTGGTGTGATATTCTACGCCTTCTTCATC
AGCATTCGCCACCTCCGCACAGCAGGGAAGCAACGTGGCCCATTCATCTG
GCAGGTTAAGGGCGCTTCCTCGTCCCACAAGGGCTCATGTTTCTGTTCAG
CTGTTGACGACTCCTGCTGGTGTGGACCTTCTTTGGGTGTGGACACGATT
CTGGAGTACAGCGAGAAGGAGAATGAGCCAGTGACGGCGTTGGTATTCAT
CAAGCGGAAGGATGGGAGAGGGATGTCGTGTGTGGGTGGCTTTGTACAGC
TCGGCGAAACCGTGGAGGAAGCCGTTAACCGCAAAGTCCAAGAAGAGATC
GGCACTACCTCACTCAACGCCCTCCGTCTGCTTGGCGTGTACAGCCACTC
TGAACGCGACGATCGGCGACACACCGCCAGTGCTGTATTTGTGGGGAAGG
TGCACGGAAAATTCAAAGCGGGGGATGACGCCAAGGTCGTGTCTGTGATT
CCCTTGCAAGCGATGAATGTAGAATTGATTAGGTTGTCGTTTGACCATAA
TCACATTTTGAAAGATTACTGGTATTCATTGAAGGAGACGGTGGTGGAGC
GGAACCTCATGCCAAGACAGGGCACGAGCCTTTGCCCGGCCCCACCGAGG
GATGAAGACCGAAAGTAGATGAACGACCTGGTTTACCACCCCAGGCAAAC
TCCTCGGGGCCCACCCATCCCGGGTTTCAAACAAGCCTTCTATCCATTGC
TTCGCTTTATTTTCAACAACCCTATTTATACTGGTGTGATATTCTACGCC
TTCTTCATCAGCATTCGCCACCTCCGCACAGCAGGGAAGCAACGTGGCCC
ATTCATCTGGCAGGTTAAGGGCGCTTCCTCGTCCCACAAGGGCTCATGTT
TCTGTTCAGCTGTTGACGACTCCTGCTGGTGTGGACCTTCTTTGGGTGTG
GACACGATTCTGGAGTACAGCGAGAAGGAGAATGAGCCAGTGACGGCGTT
GGTATTCATCAAGCGGAAGGATGGGAGAGGGATGTCGTGTGTGGGTGGCT
TTGTACAGCTCGGCGAAACCGTGGAGGAAGCCGTTAACCGCAAAGTCCAA
GAAGAGATCGGCACTACCTCACTCAACGCCCTCCGTCTGCTTGGCGTGTA
CAGCCACTCTGAACGCGACGATCGGCGACACACCGCCAGTGCTGTATTTG
TGGGGAAGGTGCACGGAAAATTCAAAGCGGGGGATGACGCCAAGGTCGTG
TCTGTGATTCCCTTGCAAGCGATGAATGTAGAATTGATTAGGTTGTCGTT
TGACCATAATCACATTTTGAAAGATTACTGGTATTCATTGAAGGAGACGG
TGGTGGAGCGGAACCTCATGCCAAGACAGGGCACGAGCCTTTGCCCGGCC
CCACCGAGGGATGAAGACCGAAAGTAG

Synonyms

Publications