jgi.p|Nanoce1779_2|581226, mRNA_2698 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581226
Unique NamemRNA_2698
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1327
Alignment locationscaffold_5:959743..961550 +

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Properties
Property NameValue
TranscriptId581312
TrackFilteredModels2
ProteinId581226
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:959743..961550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581226gene_2698Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581226mRNA_2698-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2698CDS_2698Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2698 ID=mRNA_2698|Name=jgi.p|Nanoce1779_2|581226|organism=Nannochloropsis oceanica|type=mRNA|length=1327bp
AGGAGAGGGAAAGCAGCAGAGGAGGCAGCAGCAGCATTCCTCTCCCTGCC
TTAAGTCATGAACGACCTGGTTTACCACCCCAGGCAAACTCCTCGGGGCC
CACCCATCCCGGGTTTCAAACAAGCCTTCTATCCATTGCTTCGCTTTATT
TTCAACAACCCTATTTATACTGGTGTGATATTCTACGCCTTCTTCATCAG
CATTCGCCACCTCCGCACAGCAGGGAAGCAACGTGGCCCATTCATCTGGC
AGGTTAAGGGCGCTTCCTCGTCCCACAAGGGCTCATGTTTCTGTTCAGCT
GTTGACGACTCCTGCTGGTGTGGACCTTCTTTGGGTGTGGACACGATTCT
GGAGTACAGCGAGAAGGAGAATGAGCCAGTGACGGCGTTGGTATTCATCA
AGCGGAAGGATGGGAGAGGGATGTCGTGTGTGGGTGGCTTTGTACAGCTC
GGCGAAACCGTGGAGGAAGCCGTTAACCGCAAAGTCCAAGAAGAGATCGG
CACTACCTCACTCAACGCCCTCCGTCTGCTTGGCGTGTACAGCCACTCTG
AACGCGACGATCGGCGACACACCGCCAGTGCTGTATTTGTGGGGAAGGTG
CACGGAAAATTCAAAGCGGGGGATGACGCCAAGGTCGTGTCTGTGATTCC
CTTGCAAGCGATGAATGTAGAATTGATTAGGTTGTCGTTTGACCATAATC
ACATTTTGAAAGATTACTGGTATTCATTGAAGGAGACGGTGGTGGAGCGG
AACCTCATGCCAAGACAGGGCACGAGCCTTTGCCCGGCCCCACCGAGGGA
TGAAGACCGAAAGTAGTTGGAGAGAAATGAACCCACAAAGTCATGAAGTT
GAACACAATGCCAAAAGTACAATTATTCAACAGATATCCCATGGACTGTT
TTGGTGCTCGATGCTTTTCGTTTGCGATGCGCTCTCCAGGTCAGCAATCA
GCAGCAGCATTACACACTACCCTCCTCTTTCCCTCTCTTCCTCACTCCTT
TCATCTCAACTCCACCATTGGCCTCAGTGTCTTAGTAGGACTTGTGGGGA
GTAGCGGGCAGCTGGGAAAGTAGATAATTCGTTGTCGCCTTTTTAAAAAC
TGGACATCTCAAAACAATGGCTACAGCAGAGCCAGGCCATGGGTGCTGGG
CGGATTTTACTTGTTCAGGGAATCCAGGGATGTTTGTTCCGAGCACGTTA
ATATACATATTCTGGCCCTACGAAAGGGATATACAGACAATTGACTAAGG
TAAAGAAGTCCTACGAACAGAAGAATTGCAAAAAAGGAAGAAAATAAAGC
CAAAACAAAGGAAAGATCGAGTCAATG
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protein sequence of jgi.p|Nanoce1779_2|581226

>mRNA_2698-protein ID=mRNA_2698-protein|Name=jgi.p|Nanoce1779_2|581226|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MNDLVYHPRQTPRGPPIPGFKQAFYPLLRFIFNNPIYTGVIFYAFFISIR
HLRTAGKQRGPFIWQVKGASSSHKGSCFCSAVDDSCWCGPSLGVDTILEY
SEKENEPVTALVFIKRKDGRGMSCVGGFVQLGETVEEAVNRKVQEEIGTT
SLNALRLLGVYSHSERDDRRHTASAVFVGKVHGKFKAGDDAKVVSVIPLQ
AMNVELIRLSFDHNHILKDYWYSLKETVVERNLMPRQGTSLCPAPPRDED
RK*
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mRNA from alignment at scaffold_5:959743..961550+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2698 ID=mRNA_2698|Name=jgi.p|Nanoce1779_2|581226|organism=Nannochloropsis oceanica|type=mRNA|length=1808bp|location=Sequence derived from alignment at scaffold_5:959743..961550+ (Nannochloropsis oceanica)
AGGAGAGGGAAAGCAGCAGAGGAGGCAGCAGCAGCATTCCTCTCCCTGCC
TTAAGTCATGAACGACCTGGTTTACCACCCCAGGCAAACTCCTCGGGGCC
CACCCATCCCGGGTTTCAAACAAGCCTTCTATCCATTGCTTCGCTTTATT
TTCAACAACCCTATTTATACTGGTACGTGGGAGGGGGAAGAAATTGAGTA
AAGAGTGGGAGAGATATTGCCGCCCAAGCGGATGGGGATTACGAGGAAAG
AGGGATGGATGCGTAGCTTGCGTGTGCGCGCATTTTTTCCCTTGTTTGAT
CTATTGCACTGATTGTGGGAACCGAAGCTTGGCCGTGAGGTCCAGGCCGC
GGCATGCCTTCTTATGCCCACCCATATTCGGAGGGAAAGGTTCCTGTCTT
GTTGCTTTATAGCCCTTCCACACTCACTTCCAACCCCCGCCTCTCCCTTC
AAGGTGTGATATTCTACGCCTTCTTCATCAGCATTCGCCACCTCCGCACA
GCAGGGAAGCAACGTGGCCCATTCATCTGGCAGGTTAAGGGCGCTTCCTC
GTCCCACAAGGGCTCATGTTTCTGTTCAGCTGTTGACGACTCCTGCTGGT
GTGGACCTTCTTTGGGTGTGGACACGATTCTGGAGTACAGCGAGAAGGAG
AATGAGCCAGTGACGGCGTTGGTATTCATCAAGCGGAAGGATGGGAGAGG
GATGTCGTGTGTGGGTGGCTTTGTACAGCTCGGTGAGTTTGAATTTGGGA
GGAGGGAGGAGAGGGAGGGAAAGAGGAGGGGGATATGGACGGGTAGGAGG
GGTGCCGAAAGGAGGTTTAGTGGTCTTAAAAGGAGAAGGCGACGTTGCGG
CTCTCTGTTGGGTGACTTTCTTTCCTTACTGCCTTCCCTCCCCTCCCTCC
CTCCCGCACCTCCCTTTCAATTTCCCCCTCAGGCGAAACCGTGGAGGAAG
CCGTTAACCGCAAAGTCCAAGAAGAGATCGGCACTACCTCACTCAACGCC
CTCCGTCTGCTTGGCGTGTACAGCCACTCTGAACGCGACGATCGGCGACA
CACCGCCAGTGCTGTATTTGTGGGGAAGGTGCACGGAAAATTCAAAGCGG
GGGATGACGCCAAGGTCGTGTCTGTGATTCCCTTGCAAGCGATGAATGTA
GAATTGATTAGGTTGTCGTTTGACCATAATCACATTTTGAAAGATTACTG
GTATTCATTGAAGGAGACGGTGGTGGAGCGGAACCTCATGCCAAGACAGG
GCACGAGCCTTTGCCCGGCCCCACCGAGGGATGAAGACCGAAAGTAGTTG
GAGAGAAATGAACCCACAAAGTCATGAAGTTGAACACAATGCCAAAAGTA
CAATTATTCAACAGATATCCCATGGACTGTTTTGGTGCTCGATGCTTTTC
GTTTGCGATGCGCTCTCCAGGTCAGCAATCAGCAGCAGCATTACACACTA
CCCTCCTCTTTCCCTCTCTTCCTCACTCCTTTCATCTCAACTCCACCATT
GGCCTCAGTGTCTTAGTAGGACTTGTGGGGAGTAGCGGGCAGCTGGGAAA
GTAGATAATTCGTTGTCGCCTTTTTAAAAACTGGACATCTCAAAACAATG
GCTACAGCAGAGCCAGGCCATGGGTGCTGGGCGGATTTTACTTGTTCAGG
GAATCCAGGGATGTTTGTTCCGAGCACGTTAATATACATATTCTGGCCCT
ACGAAAGGGATATACAGACAATTGACTAAGGTAAAGAAGTCCTACGAACA
GAAGAATTGCAAAAAAGGAAGAAAATAAAGCCAAAACAAAGGAAAGATCG
AGTCAATG
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Coding sequence (CDS) from alignment at scaffold_5:959743..961550+

>mRNA_2698 ID=mRNA_2698|Name=jgi.p|Nanoce1779_2|581226|organism=Nannochloropsis oceanica|type=CDS|length=2277bp|location=Sequence derived from alignment at scaffold_5:959743..961550+ (Nannochloropsis oceanica)
ATGAACGACCTGGTTTACCACCCCAGGCAAACTCCTCGGGGCCCACCCAT
CCCGGGTTTCAAACAAGCCTTCTATCCATTGCTTCGCTTTATTTTCAACA
ACCCTATTTATACTGGTGTGATATTCTACGCCTTCTTCATCAGCATTCGC
CACCTCCGCACAGCAGGGAAGCAACGTGGCCCATTCATCTGGCAGGTTAA
GGGCGCTTCCTCGTCCCACAAGGGCTCATGTTTCTGTTCAGCTGTTGACG
ACTCCTGCTGGTGTGGACCTTCTTTGGGTGTGGACACGATTCTGGAGTAC
AGCGAGAAGGAGAATGAGCCAGTGACGGCGTTGGTATTCATCAAGCGGAA
GGATGGGAGAGGGATGTCGTGTGTGGGTGGCTTTGTACAGCTCGGCGAAA
CCGTGGAGGAAGCCGTTAACCGCAAAGTCCAAGAAGAGATCGGCACTACC
TCACTCAACGCCCTCCGTCTGCTTGGCGTGTACAGCCACTCTGAACGCGA
CGATCGGCGACACACCGCCAGTGCTGTATTTGTGGGGAAGGTGCACGGAA
AATTCAAAGCGGGGGATGACGCCAAGGTCGTGTCTGTGATTCCCTTGCAA
GCGATGAATGTAGAATTGATTAGGTTGTCGTTTGACCATAATCACATTTT
GAAAGATTACTGGTATTCATTGAAGGAGACGGTGGTGGAGCGGAACCTCA
TGCCAAGACAGGGCACGAGCCTTTGCCCGGCCCCACCGAGGGATGAAGAC
CGAAAGTAGATGAACGACCTGGTTTACCACCCCAGGCAAACTCCTCGGGG
CCCACCCATCCCGGGTTTCAAACAAGCCTTCTATCCATTGCTTCGCTTTA
TTTTCAACAACCCTATTTATACTGGTGTGATATTCTACGCCTTCTTCATC
AGCATTCGCCACCTCCGCACAGCAGGGAAGCAACGTGGCCCATTCATCTG
GCAGGTTAAGGGCGCTTCCTCGTCCCACAAGGGCTCATGTTTCTGTTCAG
CTGTTGACGACTCCTGCTGGTGTGGACCTTCTTTGGGTGTGGACACGATT
CTGGAGTACAGCGAGAAGGAGAATGAGCCAGTGACGGCGTTGGTATTCAT
CAAGCGGAAGGATGGGAGAGGGATGTCGTGTGTGGGTGGCTTTGTACAGC
TCGGCGAAACCGTGGAGGAAGCCGTTAACCGCAAAGTCCAAGAAGAGATC
GGCACTACCTCACTCAACGCCCTCCGTCTGCTTGGCGTGTACAGCCACTC
TGAACGCGACGATCGGCGACACACCGCCAGTGCTGTATTTGTGGGGAAGG
TGCACGGAAAATTCAAAGCGGGGGATGACGCCAAGGTCGTGTCTGTGATT
CCCTTGCAAGCGATGAATGTAGAATTGATTAGGTTGTCGTTTGACCATAA
TCACATTTTGAAAGATTACTGGTATTCATTGAAGGAGACGGTGGTGGAGC
GGAACCTCATGCCAAGACAGGGCACGAGCCTTTGCCCGGCCCCACCGAGG
GATGAAGACCGAAAGTAGATGAACGACCTGGTTTACCACCCCAGGCAAAC
TCCTCGGGGCCCACCCATCCCGGGTTTCAAACAAGCCTTCTATCCATTGC
TTCGCTTTATTTTCAACAACCCTATTTATACTGGTGTGATATTCTACGCC
TTCTTCATCAGCATTCGCCACCTCCGCACAGCAGGGAAGCAACGTGGCCC
ATTCATCTGGCAGGTTAAGGGCGCTTCCTCGTCCCACAAGGGCTCATGTT
TCTGTTCAGCTGTTGACGACTCCTGCTGGTGTGGACCTTCTTTGGGTGTG
GACACGATTCTGGAGTACAGCGAGAAGGAGAATGAGCCAGTGACGGCGTT
GGTATTCATCAAGCGGAAGGATGGGAGAGGGATGTCGTGTGTGGGTGGCT
TTGTACAGCTCGGCGAAACCGTGGAGGAAGCCGTTAACCGCAAAGTCCAA
GAAGAGATCGGCACTACCTCACTCAACGCCCTCCGTCTGCTTGGCGTGTA
CAGCCACTCTGAACGCGACGATCGGCGACACACCGCCAGTGCTGTATTTG
TGGGGAAGGTGCACGGAAAATTCAAAGCGGGGGATGACGCCAAGGTCGTG
TCTGTGATTCCCTTGCAAGCGATGAATGTAGAATTGATTAGGTTGTCGTT
TGACCATAATCACATTTTGAAAGATTACTGGTATTCATTGAAGGAGACGG
TGGTGGAGCGGAACCTCATGCCAAGACAGGGCACGAGCCTTTGCCCGGCC
CCACCGAGGGATGAAGACCGAAAGTAG
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Synonyms
Publications