jgi.p|Nanoce1779_2|581207, mRNA_2695 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581207
Unique NamemRNA_2695
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1261
Alignment locationscaffold_5:953045..954586 +

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Properties
Property NameValue
TranscriptId581293
TrackFilteredModels2
ProteinId581207
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:953045..954586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581207gene_2695Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581207mRNA_2695-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2695CDS_2695Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2695 ID=mRNA_2695|Name=jgi.p|Nanoce1779_2|581207|organism=Nannochloropsis oceanica|type=mRNA|length=1261bp
GTCGTTAATTTCTTCGATGATGTGTTGTTCAACAAGTTGTGTTCCATGCT
TAGTTTAATTTGTGCCCATATTTTTCTCGTCCTCACCCACGCTCACGAAG
CCTACGATGACCCAAAACTGAAATGGACAGTAGATAGACTTAAGCGCAAG
AAATGTTGCTTCTGCATCGGGGGTTTTGGATCGGGAGCCTTTCATTGGCT
GTGGCACGAGGCACTATTATCAGGCCTCGGCATGCGTCGTCTTTTGCCGT
CCCATTACGCATGGCCGTCAAGATCACATTGCCTCCGGGCAAGCAGCAGC
AGCGGCATAAGCAGCAGCCATCACCAGCACCCGAATCACCCCTTCTGCCT
TCCCGACGGCCCTTTCGCGTGACCCCCACTACGACGCGCCTCGACGAGGT
AGGGACACCCACGATTCAACGCCCTGTCTCCCTCCAAGAGATGGGGCAGC
TTTTGCTGCAGGAAAAAAAAACATTCGGGGCGGCCTTGACGGGTATTGGG
CTGGCTTCTGCCTGCCAAATGTGCGTCCCTTACATCTTCGGAAGAGTAGT
GGATTTGTTGTCGGCGTCGGTGGGTATCGGTGTGAGCACGGCCGGCGCCA
GTGAGCTAGTGAGCAATTCTGTTGTGATGGAGGGACTACGAGACAATGCA
ATGGCCATGCTTGGCGTGGGGTTGGTAGGGACGATGGCCACATACGCGAG
CACGGCTCAGTTGGACATAGTGGGACAGCGGATCTCGATGGACTTACGGA
AGCGTTTGTTTAGCAACATTCTGGATCAAGACCTCGCCTTCTTCGACGTG
AACAAATCGGGCGAGCTGGCCAATCGCCTCTCGACTGACGTTCACGAGGT
CGCGGAGCACCTGGTAGAAAACGTTTCACTGTTCCTGTCGGCGGCCGTTA
TGGCCACAGGAAGTGCCGGCATGCTATTGTATATCTCGCCTTCCCTGAGT
GTTGTCACTCTTTCCGTTGTTCCCGCCATGGTGTTGGGCGCGGCACAATA
TTCTAAAATCGTCAAGAAATTGAGCCTTGCCCTGTTGAACAGCTTAGCAG
TGAGCACCCAGCAGGCGGCAGAAAAAATGGGTGCCATCCGAATTGTTCGT
CACTTTGCTGCCGAGGACCGGGAGAAAGAGAGATACGGGAATATCATTGA
TATGTCTCTGGGGCTGGCGAGGAAACTTGCGGTCTCGGAGGGGGTGTATG
TGGCGGCGATCTTCGCAGTGTCGAATTTTGCGTTGCTGGGGGTGTTGTTT
TTAGGGGCGGG
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protein sequence of jgi.p|Nanoce1779_2|581207

>mRNA_2695-protein ID=mRNA_2695-protein|Name=jgi.p|Nanoce1779_2|581207|organism=Nannochloropsis oceanica|type=polypeptide|length=109bp
MLSLICAHIFLVLTHAHEAYDDPKLKWTVDRLKRKKCCFCIGGFGSGAFH
WLWHEALLSGLGMRRLLPSHYAWPSRSHCLRASSSSGISSSHHQHPNHPF
CLPDGPFA*
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mRNA from alignment at scaffold_5:953045..954586+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2695 ID=mRNA_2695|Name=jgi.p|Nanoce1779_2|581207|organism=Nannochloropsis oceanica|type=mRNA|length=1542bp|location=Sequence derived from alignment at scaffold_5:953045..954586+ (Nannochloropsis oceanica)
GTCGTTAATTTCTTCGATGATGTGTTGTTCAACAAGTTGTGTTCCATGCT
TAGTTTAATTTGTGCCCATATTTTTCTCGTCCTCACCCACGCTCACGAAG
CCTACGATGACCCAAAACTGAAATGGACAGTAGATAGACTTAAGCGCAAG
AAATGTTGCTTCTGCATCGGGGGTTTTGGATCGGGAGCCTTTCATTGGCT
GTGGCACGAGGCACTATTATCAGGCCTCGGCATGCGTCGTCTTTTGCCGT
CCCATTACGCATGGCCGTCAAGATCACATTGCCTCCGGGCAAGCAGCAGC
AGCGGCATAAGCAGCAGCCATCACCAGCACCCGAATCACCCCTTCTGCCT
TCCCGACGGCCCTTTCGCGTGACCCCCACTACGACGCGCCTCGACGAGGT
AGGGACACCCACGATTCAACGCCCTGTCTCCCTCCAAGAGATGGGGCAGC
TTTTGCTGCAGGAAAAAAAAACATTCGGGGCGGCCTTGACGGGTATTGGG
CTGGCTTCTGCCTGCCAAATGTGCGTCCCTTACATCTTCGGAAGAGTAGT
GGATTTGTTGTCGGCGTCGGTGGGTATCGGTGTGAGCACGGCCGGCGCCA
GTGAGCTAGTGAGCAATTCTGTTGTGATGGAGGGACTACGAGACAATGCA
ATGGCCATGCTTGGCGTGGGGTTGGTAGGGACGATGGCCACATACGCGAG
CACGGCTCAGTTGGACATAGTGGGACAGCGGATCTCGATGGACTTACGGA
AGCGTTTGTTTAGCAACATTGTACGTAATAGTGGAGGGAGGGAGGGGAGG
GAAGGGGGGGGAAAGGACGAGGCGGATGGAGCAAGGACAAATCCGTCTCT
TGGCAGAGGTGTATCTGTAATATTCATGTCGATGCGTGGAGTTTCCATGG
AGGGACGGGCTGAGAGCTGAGAAAGAAAGCAAGAAAGTAACATAAGAGAA
GGTGGATCAACTTCCCTCTTCCTTTTCCAAAAACTCATCCACACCTTTCT
TCCCTTTCCTCTCTCTCTCCTTTCACTTCCTCCCTTCCTCTACTTCTGCA
GCTGGATCAAGACCTCGCCTTCTTCGACGTGAACAAATCGGGCGAGCTGG
CCAATCGCCTCTCGACTGACGTTCACGAGGTCGCGGAGCACCTGGTAGAA
AACGTTTCACTGTTCCTGTCGGCGGCCGTTATGGCCACAGGAAGTGCCGG
CATGCTATTGTATATCTCGCCTTCCCTGAGTGTTGTCACTCTTTCCGTTG
TTCCCGCCATGGTGTTGGGCGCGGCACAATATTCTAAAATCGTCAAGAAA
TTGAGCCTTGCCCTGTTGAACAGCTTAGCAGTGAGCACCCAGCAGGCGGC
AGAAAAAATGGGTGCCATCCGAATTGTTCGTCACTTTGCTGCCGAGGACC
GGGAGAAAGAGAGATACGGGAATATCATTGATATGTCTCTGGGGCTGGCG
AGGAAACTTGCGGTCTCGGAGGGGGTGTATGTGGCGGCGATCTTCGCAGT
GTCGAATTTTGCGTTGCTGGGGGTGTTGTTTTTAGGGGCGGG
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Coding sequence (CDS) from alignment at scaffold_5:953045..954586+

>mRNA_2695 ID=mRNA_2695|Name=jgi.p|Nanoce1779_2|581207|organism=Nannochloropsis oceanica|type=CDS|length=327bp|location=Sequence derived from alignment at scaffold_5:953045..954586+ (Nannochloropsis oceanica)
ATGCTTAGTTTAATTTGTGCCCATATTTTTCTCGTCCTCACCCACGCTCA
CGAAGCCTACGATGACCCAAAACTGAAATGGACAGTAGATAGACTTAAGC
GCAAGAAATGTTGCTTCTGCATCGGGGGTTTTGGATCGGGAGCCTTTCAT
TGGCTGTGGCACGAGGCACTATTATCAGGCCTCGGCATGCGTCGTCTTTT
GCCGTCCCATTACGCATGGCCGTCAAGATCACATTGCCTCCGGGCAAGCA
GCAGCAGCGGCATAAGCAGCAGCCATCACCAGCACCCGAATCACCCCTTC
TGCCTTCCCGACGGCCCTTTCGCGTGA
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Synonyms
Publications