jgi.p|Nanoce1779_2|637572, mRNA_2692 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|637572
Unique Name	mRNA_2692
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1461
Alignment location	scaffold_5:940609..942069 -

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Properties


Property Name	Value
TranscriptId	637658
Track	FilteredModels2
ProteinId	637572

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:940609..942069 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|637572	gene_2692	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2692	CDS_2692	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|637572	mRNA_2692-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:940609..942069-
coding sequence from alignment at scaffold_5:940609..942069-

mRNA sequence

>mRNA_2692 ID=mRNA_2692|Name=jgi.p|Nanoce1779_2|637572|organism=Nannochloropsis oceanica|type=mRNA|length=1461bp
ATGTATGCGCCTCGCAACCCCAAGGGGCGCGGTCGAAAGACGAAGCTCCC
GTCCAAACTTTACAATAAGAATTTTGTCGCCCATATCAACCCCGCGACTG
CCACAACGAGCACTCCGTCCACTTCCTCCACCTTTTCACCCTTTCTTCCT
CAACAAATGCCCACGTCCCCCGCTCTAATCGACTCTTCATCGACGGGTTT
TAAAGATGCCCTCGCCCCAAGCGGTGGCCAAAAGCTTTCCACAACATTGA
TTCCCTATTTCACTGACGACGTGGACGGGAGCCCCCGAAACGTGACGCGG
CAAGGCCTCACTCTCCGGCAGCTCTACCAGCTCAAGAAGGACGCCGATGC
ATGGCACCTCGTGGAATGTAAGCGCCGTCAAGATCAAGCAGCTTCTGATA
TGGCTGCCCGGATGAAGCAACAGGCCGAGAGGCAAGCCTTGTCCAGATGC
TACAGCCAACAGGCGCACGAGCGGCAAGTCCAAGAAGAGGTCAGCAAGGC
CGAATCTCGGGTCTGGGCACGGCAGTTGAAGCAACAGGCTGCAGAAGAGC
GGGCGGCTGAGATGGCGGCACGGACAGCGCACGTGGCGCAAATGGCTGCC
TATCGAAGCGAATTTTGCGAGGACATGGAACGCTCAAGGCTCACAAAAAT
GCAGCAACGTCAAAAGAAAATCGCGTGCGAGCAAGGGGAGATAGAGACAG
CGCGGCGCCTGGCGATGAAAGAAGCTCAAGCGATGCAATGCAAGAGGGAG
GCAAATTTGGAGCGAATGAAAAGAATTCAGTTGGAAGAGCAGCAGCAGAT
GCAGGATCGCGCCCGTCGCAAGAATGAGGAAGCGGAGGAGATCAAGAAGT
TGGAAAGGGAATGGGTGGCGGCGCAGGATCAGAAAGACCAAGACCGGCAT
GCGGCGTTTCAGAAGATTTTGACACAGCAGGAAGCCAAAGAAGCGAAGTT
TAGCATGACGACACAAGAGGCCCTGAAGAGGCAGTTAGAGGAAGATGAAC
ACCGTGCGAGCAAGTACCGTGAGCAAGCCGAAATGGTGCGAGAGGCAGCA
GATAATCGGCGTGACACCGTGTCTCGGACGGCTGCTCGGGCCCAATTGGA
GGCATTGGACCTCGAGATTCGGTTGCAGGCTGAGCGGAAGCGACAGCTCA
AGGCCGACGAGCAGGTCATTGCGCAAGAAATGCTTTCGCGGGACAAAGCG
GCCTATGAGAAGGACTTAGAGATGCAGCGTGCGGCGCGCTTGGCGGTTCA
GAAGCACAAGCGATTACTCGCGGTACAGATACAGGAGCAACAGCAACAGA
ACCAACGCATAATCGTCGGCTTTGTTCAGCCCTCGGAGATGGCCCTGAAC
AAAAGTCTATTCCAGGAGATCGGCTACGTCTCGCCCGATCCCAAGGCACC
TCCCCTGCAATACTTACAGGCATCGGTCACAGATGTTAATAAGGGAGTGC
TTGGCGCATGA

protein sequence of jgi.p|Nanoce1779_2|637572

>mRNA_2692-protein ID=mRNA_2692-protein|Name=jgi.p|Nanoce1779_2|637572|organism=Nannochloropsis oceanica|type=polypeptide|length=487bp
MYAPRNPKGRGRKTKLPSKLYNKNFVAHINPATATTSTPSTSSTFSPFLP
QQMPTSPALIDSSSTGFKDALAPSGGQKLSTTLIPYFTDDVDGSPRNVTR
QGLTLRQLYQLKKDADAWHLVECKRRQDQAASDMAARMKQQAERQALSRC
YSQQAHERQVQEEVSKAESRVWARQLKQQAAEERAAEMAARTAHVAQMAA
YRSEFCEDMERSRLTKMQQRQKKIACEQGEIETARRLAMKEAQAMQCKRE
ANLERMKRIQLEEQQQMQDRARRKNEEAEEIKKLEREWVAAQDQKDQDRH
AAFQKILTQQEAKEAKFSMTTQEALKRQLEEDEHRASKYREQAEMVREAA
DNRRDTVSRTAARAQLEALDLEIRLQAERKRQLKADEQVIAQEMLSRDKA
AYEKDLEMQRAARLAVQKHKRLLAVQIQEQQQQNQRIIVGFVQPSEMALN
KSLFQEIGYVSPDPKAPPLQYLQASVTDVNKGVLGA*

mRNA from alignment at scaffold_5:940609..942069-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2692 ID=mRNA_2692|Name=jgi.p|Nanoce1779_2|637572|organism=Nannochloropsis oceanica|type=mRNA|length=1461bp|location=Sequence derived from alignment at scaffold_5:940609..942069- (Nannochloropsis oceanica)
ATGTATGCGCCTCGCAACCCCAAGGGGCGCGGTCGAAAGACGAAGCTCCC
GTCCAAACTTTACAATAAGAATTTTGTCGCCCATATCAACCCCGCGACTG
CCACAACGAGCACTCCGTCCACTTCCTCCACCTTTTCACCCTTTCTTCCT
CAACAAATGCCCACGTCCCCCGCTCTAATCGACTCTTCATCGACGGGTTT
TAAAGATGCCCTCGCCCCAAGCGGTGGCCAAAAGCTTTCCACAACATTGA
TTCCCTATTTCACTGACGACGTGGACGGGAGCCCCCGAAACGTGACGCGG
CAAGGCCTCACTCTCCGGCAGCTCTACCAGCTCAAGAAGGACGCCGATGC
ATGGCACCTCGTGGAATGTAAGCGCCGTCAAGATCAAGCAGCTTCTGATA
TGGCTGCCCGGATGAAGCAACAGGCCGAGAGGCAAGCCTTGTCCAGATGC
TACAGCCAACAGGCGCACGAGCGGCAAGTCCAAGAAGAGGTCAGCAAGGC
CGAATCTCGGGTCTGGGCACGGCAGTTGAAGCAACAGGCTGCAGAAGAGC
GGGCGGCTGAGATGGCGGCACGGACAGCGCACGTGGCGCAAATGGCTGCC
TATCGAAGCGAATTTTGCGAGGACATGGAACGCTCAAGGCTCACAAAAAT
GCAGCAACGTCAAAAGAAAATCGCGTGCGAGCAAGGGGAGATAGAGACAG
CGCGGCGCCTGGCGATGAAAGAAGCTCAAGCGATGCAATGCAAGAGGGAG
GCAAATTTGGAGCGAATGAAAAGAATTCAGTTGGAAGAGCAGCAGCAGAT
GCAGGATCGCGCCCGTCGCAAGAATGAGGAAGCGGAGGAGATCAAGAAGT
TGGAAAGGGAATGGGTGGCGGCGCAGGATCAGAAAGACCAAGACCGGCAT
GCGGCGTTTCAGAAGATTTTGACACAGCAGGAAGCCAAAGAAGCGAAGTT
TAGCATGACGACACAAGAGGCCCTGAAGAGGCAGTTAGAGGAAGATGAAC
ACCGTGCGAGCAAGTACCGTGAGCAAGCCGAAATGGTGCGAGAGGCAGCA
GATAATCGGCGTGACACCGTGTCTCGGACGGCTGCTCGGGCCCAATTGGA
GGCATTGGACCTCGAGATTCGGTTGCAGGCTGAGCGGAAGCGACAGCTCA
AGGCCGACGAGCAGGTCATTGCGCAAGAAATGCTTTCGCGGGACAAAGCG
GCCTATGAGAAGGACTTAGAGATGCAGCGTGCGGCGCGCTTGGCGGTTCA
GAAGCACAAGCGATTACTCGCGGTACAGATACAGGAGCAACAGCAACAGA
ACCAACGCATAATCGTCGGCTTTGTTCAGCCCTCGGAGATGGCCCTGAAC
AAAAGTCTATTCCAGGAGATCGGCTACGTCTCGCCCGATCCCAAGGCACC
TCCCCTGCAATACTTACAGGCATCGGTCACAGATGTTAATAAGGGAGTGC
TTGGCGCATGA

Coding sequence (CDS) from alignment at scaffold_5:940609..942069-

>mRNA_2692 ID=mRNA_2692|Name=jgi.p|Nanoce1779_2|637572|organism=Nannochloropsis oceanica|type=CDS|length=1461bp|location=Sequence derived from alignment at scaffold_5:940609..942069- (Nannochloropsis oceanica)
ATGTATGCGCCTCGCAACCCCAAGGGGCGCGGTCGAAAGACGAAGCTCCC
GTCCAAACTTTACAATAAGAATTTTGTCGCCCATATCAACCCCGCGACTG
CCACAACGAGCACTCCGTCCACTTCCTCCACCTTTTCACCCTTTCTTCCT
CAACAAATGCCCACGTCCCCCGCTCTAATCGACTCTTCATCGACGGGTTT
TAAAGATGCCCTCGCCCCAAGCGGTGGCCAAAAGCTTTCCACAACATTGA
TTCCCTATTTCACTGACGACGTGGACGGGAGCCCCCGAAACGTGACGCGG
CAAGGCCTCACTCTCCGGCAGCTCTACCAGCTCAAGAAGGACGCCGATGC
ATGGCACCTCGTGGAATGTAAGCGCCGTCAAGATCAAGCAGCTTCTGATA
TGGCTGCCCGGATGAAGCAACAGGCCGAGAGGCAAGCCTTGTCCAGATGC
TACAGCCAACAGGCGCACGAGCGGCAAGTCCAAGAAGAGGTCAGCAAGGC
CGAATCTCGGGTCTGGGCACGGCAGTTGAAGCAACAGGCTGCAGAAGAGC
GGGCGGCTGAGATGGCGGCACGGACAGCGCACGTGGCGCAAATGGCTGCC
TATCGAAGCGAATTTTGCGAGGACATGGAACGCTCAAGGCTCACAAAAAT
GCAGCAACGTCAAAAGAAAATCGCGTGCGAGCAAGGGGAGATAGAGACAG
CGCGGCGCCTGGCGATGAAAGAAGCTCAAGCGATGCAATGCAAGAGGGAG
GCAAATTTGGAGCGAATGAAAAGAATTCAGTTGGAAGAGCAGCAGCAGAT
GCAGGATCGCGCCCGTCGCAAGAATGAGGAAGCGGAGGAGATCAAGAAGT
TGGAAAGGGAATGGGTGGCGGCGCAGGATCAGAAAGACCAAGACCGGCAT
GCGGCGTTTCAGAAGATTTTGACACAGCAGGAAGCCAAAGAAGCGAAGTT
TAGCATGACGACACAAGAGGCCCTGAAGAGGCAGTTAGAGGAAGATGAAC
ACCGTGCGAGCAAGTACCGTGAGCAAGCCGAAATGGTGCGAGAGGCAGCA
GATAATCGGCGTGACACCGTGTCTCGGACGGCTGCTCGGGCCCAATTGGA
GGCATTGGACCTCGAGATTCGGTTGCAGGCTGAGCGGAAGCGACAGCTCA
AGGCCGACGAGCAGGTCATTGCGCAAGAAATGCTTTCGCGGGACAAAGCG
GCCTATGAGAAGGACTTAGAGATGCAGCGTGCGGCGCGCTTGGCGGTTCA
GAAGCACAAGCGATTACTCGCGGTACAGATACAGGAGCAACAGCAACAGA
ACCAACGCATAATCGTCGGCTTTGTTCAGCCCTCGGAGATGGCCCTGAAC
AAAAGTCTATTCCAGGAGATCGGCTACGTCTCGCCCGATCCCAAGGCACC
TCCCCTGCAATACTTACAGGCATCGGTCACAGATGTTAATAAGGGAGTGC
TTGGCGCATGA

Synonyms

Publications