jgi.p|Nanoce1779_2|581192, mRNA_2691 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581192
Unique NamemRNA_2691
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1103
Alignment locationscaffold_5:939251..940353 +

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Properties
Property NameValue
TranscriptId581278
TrackFilteredModels2
ProteinId581192
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:939251..940353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581192gene_2691Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581192mRNA_2691-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2691CDS_2691Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2691 ID=mRNA_2691|Name=jgi.p|Nanoce1779_2|581192|organism=Nannochloropsis oceanica|type=mRNA|length=1103bp
CGCTTGAGTGAGCGAATGATGGATGTGTTTCTCGATTCTTTATTTTTAGT
CGTTCACACGGTCAGTGACGTTCAGTCAGGCCACTCTTATCTTTCCTCTT
GCCAACCACGCACTTCCTTCTTACCACACACGCAAACTACACACAGACAC
AGGGCCACACCGGCAAGCTCTCTATTTGCACCCCCCCCGCCCTCACCCGC
CTCCTCTTCGTACCGTAAGTGCAGCACACGCGGAGAACTTAAGTCACACA
ATGACTTCCCCTCTACTTCGTTATGCCCTACGCTTGCCTGGCCGCCTCCT
CAAACGACCTCGTGCCTTTACCACAGCAACTATCCTCAAGAATGACGAAA
GCTCTATAATTTCTCCAGCGCCCGCCCCTCCTGGCTCCGATCTCTATGAC
ACCCACATTCCCACCACCCCTTTCCAAAAACTGTTCATTGCTGGCTACTC
GGCCGCCACTGCCCTCCGAGATCCCGAACGTGGTGACATGGTGGCCGCCT
TGGGAGAAACCACCGGACTGGTTGCCCTCCAAAGCCTGCGCGAAATTATG
GCCGCCGATGCGGTGGGATGCGAGCTGCTCGAGGCCAAGCCTGACATTAA
GGAGGAGTCCGTGCACCCAGACCGATTGCGAAAACTGCCCCCTGGAACCT
TCGGTCATGAATATGCATGCTTCATGGACCACCATGGCTATTCGGCCGAT
GAGCGCACGGCCGTTCGTTTTGTGGATGACCCGGAATTGGCCTTTGTGAT
CCAAAGGTATCGGCAAGTGCATGATTTTTGGCATGTTTTGTGTGGGTTGC
CCCCGACGGTGTTGGGGGAGCTGGCATTGAAATGGTTTGAGATGGTGCAA
ACTCGTCTGCCCGTTGCTGCATTTAGTGGTTTGTTTGGTCCCTTATCATT
ACCGGCGACTGAGCGGAAGGTATTGAGGGAGCAATACATTCCATGGGCTG
TCCGGACGGCGGTCGCGGCGAAGCCGTTGATGTGCGTGTGGTATGAACGA
AGGTTTGATGAGCCCTTGAACGCAATGCGTGCGCAATTGAATATTACGCC
AGCGCCGCCCTTGGTGCGGCCAACCAAGAAGTAAATTATGGAGAAAAGAG
TAA
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protein sequence of jgi.p|Nanoce1779_2|581192

>mRNA_2691-protein ID=mRNA_2691-protein|Name=jgi.p|Nanoce1779_2|581192|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MTSPLLRYALRLPGRLLKRPRAFTTATILKNDESSIISPAPAPPGSDLYD
THIPTTPFQKLFIAGYSAATALRDPERGDMVAALGETTGLVALQSLREIM
AADAVGCELLEAKPDIKEESVHPDRLRKLPPGTFGHEYACFMDHHGYSAD
ERTAVRFVDDPELAFVIQRYRQVHDFWHVLCGLPPTVLGELALKWFEMVQ
TRLPVAAFSGLFGPLSLPATERKVLREQYIPWAVRTAVAAKPLMCVWYER
RFDEPLNAMRAQLNITPAPPLVRPTKK*
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mRNA from alignment at scaffold_5:939251..940353+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2691 ID=mRNA_2691|Name=jgi.p|Nanoce1779_2|581192|organism=Nannochloropsis oceanica|type=mRNA|length=1103bp|location=Sequence derived from alignment at scaffold_5:939251..940353+ (Nannochloropsis oceanica)
CGCTTGAGTGAGCGAATGATGGATGTGTTTCTCGATTCTTTATTTTTAGT
CGTTCACACGGTCAGTGACGTTCAGTCAGGCCACTCTTATCTTTCCTCTT
GCCAACCACGCACTTCCTTCTTACCACACACGCAAACTACACACAGACAC
AGGGCCACACCGGCAAGCTCTCTATTTGCACCCCCCCCGCCCTCACCCGC
CTCCTCTTCGTACCGTAAGTGCAGCACACGCGGAGAACTTAAGTCACACA
ATGACTTCCCCTCTACTTCGTTATGCCCTACGCTTGCCTGGCCGCCTCCT
CAAACGACCTCGTGCCTTTACCACAGCAACTATCCTCAAGAATGACGAAA
GCTCTATAATTTCTCCAGCGCCCGCCCCTCCTGGCTCCGATCTCTATGAC
ACCCACATTCCCACCACCCCTTTCCAAAAACTGTTCATTGCTGGCTACTC
GGCCGCCACTGCCCTCCGAGATCCCGAACGTGGTGACATGGTGGCCGCCT
TGGGAGAAACCACCGGACTGGTTGCCCTCCAAAGCCTGCGCGAAATTATG
GCCGCCGATGCGGTGGGATGCGAGCTGCTCGAGGCCAAGCCTGACATTAA
GGAGGAGTCCGTGCACCCAGACCGATTGCGAAAACTGCCCCCTGGAACCT
TCGGTCATGAATATGCATGCTTCATGGACCACCATGGCTATTCGGCCGAT
GAGCGCACGGCCGTTCGTTTTGTGGATGACCCGGAATTGGCCTTTGTGAT
CCAAAGGTATCGGCAAGTGCATGATTTTTGGCATGTTTTGTGTGGGTTGC
CCCCGACGGTGTTGGGGGAGCTGGCATTGAAATGGTTTGAGATGGTGCAA
ACTCGTCTGCCCGTTGCTGCATTTAGTGGTTTGTTTGGTCCCTTATCATT
ACCGGCGACTGAGCGGAAGGTATTGAGGGAGCAATACATTCCATGGGCTG
TCCGGACGGCGGTCGCGGCGAAGCCGTTGATGTGCGTGTGGTATGAACGA
AGGTTTGATGAGCCCTTGAACGCAATGCGTGCGCAATTGAATATTACGCC
AGCGCCGCCCTTGGTGCGGCCAACCAAGAAGTAAATTATGGAGAAAAGAG
TAA
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Coding sequence (CDS) from alignment at scaffold_5:939251..940353+

>mRNA_2691 ID=mRNA_2691|Name=jgi.p|Nanoce1779_2|581192|organism=Nannochloropsis oceanica|type=CDS|length=834bp|location=Sequence derived from alignment at scaffold_5:939251..940353+ (Nannochloropsis oceanica)
ATGACTTCCCCTCTACTTCGTTATGCCCTACGCTTGCCTGGCCGCCTCCT
CAAACGACCTCGTGCCTTTACCACAGCAACTATCCTCAAGAATGACGAAA
GCTCTATAATTTCTCCAGCGCCCGCCCCTCCTGGCTCCGATCTCTATGAC
ACCCACATTCCCACCACCCCTTTCCAAAAACTGTTCATTGCTGGCTACTC
GGCCGCCACTGCCCTCCGAGATCCCGAACGTGGTGACATGGTGGCCGCCT
TGGGAGAAACCACCGGACTGGTTGCCCTCCAAAGCCTGCGCGAAATTATG
GCCGCCGATGCGGTGGGATGCGAGCTGCTCGAGGCCAAGCCTGACATTAA
GGAGGAGTCCGTGCACCCAGACCGATTGCGAAAACTGCCCCCTGGAACCT
TCGGTCATGAATATGCATGCTTCATGGACCACCATGGCTATTCGGCCGAT
GAGCGCACGGCCGTTCGTTTTGTGGATGACCCGGAATTGGCCTTTGTGAT
CCAAAGGTATCGGCAAGTGCATGATTTTTGGCATGTTTTGTGTGGGTTGC
CCCCGACGGTGTTGGGGGAGCTGGCATTGAAATGGTTTGAGATGGTGCAA
ACTCGTCTGCCCGTTGCTGCATTTAGTGGTTTGTTTGGTCCCTTATCATT
ACCGGCGACTGAGCGGAAGGTATTGAGGGAGCAATACATTCCATGGGCTG
TCCGGACGGCGGTCGCGGCGAAGCCGTTGATGTGCGTGTGGTATGAACGA
AGGTTTGATGAGCCCTTGAACGCAATGCGTGCGCAATTGAATATTACGCC
AGCGCCGCCCTTGGTGCGGCCAACCAAGAAGTAA
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Synonyms
Publications