jgi.p|Nanoce1779_2|581183, mRNA_2688 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581183
Unique Name	mRNA_2688
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1234
Alignment location	scaffold_5:934390..935791 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581269
Track	FilteredModels2
ProteinId	581183

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:934390..935791 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581183	gene_2688	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581183	mRNA_2688-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2688	CDS_2688	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:934390..935791+
coding sequence from alignment at scaffold_5:934390..935791+

mRNA sequence

>mRNA_2688 ID=mRNA_2688|Name=jgi.p|Nanoce1779_2|581183|organism=Nannochloropsis oceanica|type=mRNA|length=1234bp
AGGCACAAACTAATGCCGGATGCCTATGAAGCCGCCGTACAAGAGCACTA
CCACGTCCCTCCAGAACAACTTGAATCATTCCGTCGGGATGGCGTTGTTG
TTCTTCCCGGAGTCTTTACAGATCACGAGGTAGAAGAAGCCAAAGCCGGC
CTTGCCGAGACACTGCTGCAGCATGGTGTGGATGTGGATAATCTCGACGA
GACAGCTGGAAATTTGCGCAGTCTCTCCACCACAGGTGGTTCAGGAGGCG
TGTTGGATCTCTTTTACCCGCCATGGAAGCTACACCTCGCCCAGAGCCCT
CGCTTCTTCAGCGCCATTTCACAGCTCTGGGCCGCTACCTACGCTGCTAT
ACCATCAAATCGTCACGAGGAGGCACTTCCACCGCTCTTCTCTTCCCACA
CCGAAAAATCCAATAAAACACATGAAATCAGTGACGCCTTCTTCGAAGAC
AAGCTTCTATATGCCCACCCGTACGGGGCTTTTGACCCTACTCAAGGCTT
CTTCTACCTGGACCGCACGGGGTTCCGCGTGCCCGACCGCATCAGTCAGT
GCCATGCCAGGGGTAAGCGCCCTCTACAACGCTCTCTCACCCCTCATCTA
GATTGCTGCCCCTCAGCTCTCTACTCGTCCGACAAACAAGTGAAACGATG
GCGGCCCATCCAAAGCTTCATAGCACTCAGTGACAACCGCTCCCCAGACA
CGGGTGGGTTCGAGTGCGTCAAGGGTTGGCATCGCAAATTTCAGGCATGG
GCAGATTGTCGAAAGCCATGTAGGAAGACAGGGAAGCCCGCGCCGTGCGT
CGGTGACTTTACTCCCATTCGTCCAGAGGAAGATGCGGACGTCATTGCTC
AGTTCGCTCCCGTGTTGTACCCTGCGGGAAGTGTAGTGGCTTTTGATTGG
CGTATTCCTCATGCGAATGCTGCGAGGCATGTGGGCGAGGCACCTCGACA
GGTGAGCTATGGTAGTTTTTTGCCCGACGTTCCAGTCAATCGACTGTATG
CGCAGCGGCAACGCGAACGATTCCTGGCAGGCAAGCAGCCGGACGATCAA
TGGAAAGAGGACAAGGACAAAATTGAGATCTACGAGAATGCGGAGGGAGA
GGGTGTCTTTCTATTTTCTGAATTAGGGTCACGACTACTGGGGGATGGAT
ATGTCGAAGACGCTATAGTCAAAGCATAAAAAGTACACTATGCGCAAAAT
TTATATCATTTTTTATCGTGATCGCGCGCTTGTC

protein sequence of jgi.p|Nanoce1779_2|581183

>mRNA_2688-protein ID=mRNA_2688-protein|Name=jgi.p|Nanoce1779_2|581183|organism=Nannochloropsis oceanica|type=polypeptide|length=389bp
MPDAYEAAVQEHYHVPPEQLESFRRDGVVVLPGVFTDHEVEEAKAGLAET
LLQHGVDVDNLDETAGNLRSLSTTGGSGGVLDLFYPPWKLHLAQSPRFFS
AISQLWAATYAAIPSNRHEEALPPLFSSHTEKSNKTHEISDAFFEDKLLY
AHPYGAFDPTQGFFYLDRTGFRVPDRISQCHARGKRPLQRSLTPHLDCCP
SALYSSDKQVKRWRPIQSFIALSDNRSPDTGGFECVKGWHRKFQAWADCR
KPCRKTGKPAPCVGDFTPIRPEEDADVIAQFAPVLYPAGSVVAFDWRIPH
ANAARHVGEAPRQVSYGSFLPDVPVNRLYAQRQRERFLAGKQPDDQWKED
KDKIEIYENAEGEGVFLFSELGSRLLGDGYVEDAIVKA*

mRNA from alignment at scaffold_5:934390..935791+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2688 ID=mRNA_2688|Name=jgi.p|Nanoce1779_2|581183|organism=Nannochloropsis oceanica|type=mRNA|length=1402bp|location=Sequence derived from alignment at scaffold_5:934390..935791+ (Nannochloropsis oceanica)
AGGCACAAACTAATGCCGGATGCCTATGAAGCCGCCGTACAAGAGCACTA
CCACGTCCCTCCAGAACAACTTGAATCATTCCGTCGGGATGGCGTTGTTG
TTCTTCCCGGAGTCTTTACAGATCACGAGGTAGAAGAAGCCAAAGCCGGC
CTTGCCGAGACACTGCTGCAGCATGGTGTGGTAAGTACCTGGTTGTGCGA
CGAGCACTTCCTCCTGGGCTGGAGCATTTAGAAAAGTGATACAGTCTATG
TTATGTGGAGAGCTCTATATTGCGGGTCTCTGTTGCCCACATGAGAAGGG
TCCTTATCTTGATCCTCCACTCAGCGCCCCCTACCTCCGTAATTACAGGA
TGTGGATAATCTCGACGAGACAGCTGGAAATTTGCGCAGTCTCTCCACCA
CAGGTGGTTCAGGAGGCGTGTTGGATCTCTTTTACCCGCCATGGAAGCTA
CACCTCGCCCAGAGCCCTCGCTTCTTCAGCGCCATTTCACAGCTCTGGGC
CGCTACCTACGCTGCTATACCATCAAATCGTCACGAGGAGGCACTTCCAC
CGCTCTTCTCTTCCCACACCGAAAAATCCAATAAAACACATGAAATCAGT
GACGCCTTCTTCGAAGACAAGCTTCTATATGCCCACCCGTACGGGGCTTT
TGACCCTACTCAAGGCTTCTTCTACCTGGACCGCACGGGGTTCCGCGTGC
CCGACCGCATCAGTCAGTGCCATGCCAGGGGTAAGCGCCCTCTACAACGC
TCTCTCACCCCTCATCTAGATTGCTGCCCCTCAGCTCTCTACTCGTCCGA
CAAACAAGTGAAACGATGGCGGCCCATCCAAAGCTTCATAGCACTCAGTG
ACAACCGCTCCCCAGACACGGGTGGGTTCGAGTGCGTCAAGGGTTGGCAT
CGCAAATTTCAGGCATGGGCAGATTGTCGAAAGCCATGTAGGAAGACAGG
GAAGCCCGCGCCGTGCGTCGGTGACTTTACTCCCATTCGTCCAGAGGAAG
ATGCGGACGTCATTGCTCAGTTCGCTCCCGTGTTGTACCCTGCGGGAAGT
GTAGTGGCTTTTGATTGGCGTATTCCTCATGCGAATGCTGCGAGGCATGT
GGGCGAGGCACCTCGACAGGTGAGCTATGGTAGTTTTTTGCCCGACGTTC
CAGTCAATCGACTGTATGCGCAGCGGCAACGCGAACGATTCCTGGCAGGC
AAGCAGCCGGACGATCAATGGAAAGAGGACAAGGACAAAATTGAGATCTA
CGAGAATGCGGAGGGAGAGGGTGTCTTTCTATTTTCTGAATTAGGGTCAC
GACTACTGGGGGATGGATATGTCGAAGACGCTATAGTCAAAGCATAAAAA
GTACACTATGCGCAAAATTTATATCATTTTTTATCGTGATCGCGCGCTTG
TC

Coding sequence (CDS) from alignment at scaffold_5:934390..935791+

>mRNA_2688 ID=mRNA_2688|Name=jgi.p|Nanoce1779_2|581183|organism=Nannochloropsis oceanica|type=CDS|length=2334bp|location=Sequence derived from alignment at scaffold_5:934390..935791+ (Nannochloropsis oceanica)
ATGCCGGATGCCTATGAAGCCGCCGTACAAGAGCACTACCACGTCCCTCC
AGAACAACTTGAATCATTCCGTCGGGATGGCGTTGTTGTTCTTCCCGGAG
TCTTTACAGATCACGAGGTAGAAGAAGCCAAAGCCGGCCTTGCCGAGACA
CTGCTGCAGCATGGTGTGGATGTGGATAATCTCGACGAGACAGCTGGAAA
TTTGCGCAGTCTCTCCACCACAGGTGGTTCAGGAGGCGTGTTGGATCTCT
TTTACCCGCCATGGAAGCTACACCTCGCCCAGAGCCCTCGCTTCTTCAGC
GCCATTTCACAGCTCTGGGCCGCTACCTACGCTGCTATACCATCAAATCG
TCACGAGGAGGCACTTCCACCGCTCTTCTCTTCCCACACCGAAAAATCCA
ATAAAACACATGAAATCAGTGACGCCTTCTTCGAAGACAAGCTTCTATAT
GCCCACCCGTACGGGGCTTTTGACCCTACTCAAGGCTTCTTCTACCTGGA
CCGCACGGGGTTCCGCGTGCCCGACCGCATCAGTCAGTGCCATGCCAGGG
GTAAGCGCCCTCTACAACGCTCTCTCACCCCTCATCTAGATTGCTGCCCC
TCAGCTCTCTACTCGTCCGACAAACAAGTGAAACGATGGCGGCCCATCCA
AAGCTTCATAGCACTCAGTGACAACCGCTCCCCAGACACGGGTGGGTTCG
AGTGCGTCAAGGGTTGGCATCGCAAATTTCAGGCATGGGCAGATTGTCGA
AAGCCATGTAGGAAGACAGGGAAGCCCGCGCCGTGCGTCGGTGACTTTAC
TCCCATTCGTCCAGAGGAAGATGCGGACGTCATTGCTCAGTTCGCTCCCG
TGTTGTACCCTGCGGGAAGTGTAGTGGCTTTTGATTGGCGTATTCCTCAT
GCGAATGCTGCGAGGCATGTGGGCGAGGCACCTCGACAGGTGAGCTATGG
TAGTTTTTTGCCCGACGTTCCAGTCAATCGACTGTATGCGCAGCGGCAAC
GCGAACGATTCCTGGCAGGCAAGCAGCCGGACGATCAATGGAAAGAGGAC
AAGGACAAAATTGAGATCTACGAGAATGCGGAGGGAGAGGGTGTCTTTCT
ATTTTCTGAATTAGGGTCACGACTACTGGGGGATGGATATGTCGAAGACG
CTATAGTCAAAGCATAAATGCCGGATGCCTATGAAGCCGCCGTACAAGAG
CACTACCACGTCCCTCCAGAACAACTTGAATCATTCCGTCGGGATGGCGT
TGTTGTTCTTCCCGGAGTCTTTACAGATCACGAGGTAGAAGAAGCCAAAG
CCGGCCTTGCCGAGACACTGCTGCAGCATGGTGTGGATGTGGATAATCTC
GACGAGACAGCTGGAAATTTGCGCAGTCTCTCCACCACAGGTGGTTCAGG
AGGCGTGTTGGATCTCTTTTACCCGCCATGGAAGCTACACCTCGCCCAGA
GCCCTCGCTTCTTCAGCGCCATTTCACAGCTCTGGGCCGCTACCTACGCT
GCTATACCATCAAATCGTCACGAGGAGGCACTTCCACCGCTCTTCTCTTC
CCACACCGAAAAATCCAATAAAACACATGAAATCAGTGACGCCTTCTTCG
AAGACAAGCTTCTATATGCCCACCCGTACGGGGCTTTTGACCCTACTCAA
GGCTTCTTCTACCTGGACCGCACGGGGTTCCGCGTGCCCGACCGCATCAG
TCAGTGCCATGCCAGGGGTAAGCGCCCTCTACAACGCTCTCTCACCCCTC
ATCTAGATTGCTGCCCCTCAGCTCTCTACTCGTCCGACAAACAAGTGAAA
CGATGGCGGCCCATCCAAAGCTTCATAGCACTCAGTGACAACCGCTCCCC
AGACACGGGTGGGTTCGAGTGCGTCAAGGGTTGGCATCGCAAATTTCAGG
CATGGGCAGATTGTCGAAAGCCATGTAGGAAGACAGGGAAGCCCGCGCCG
TGCGTCGGTGACTTTACTCCCATTCGTCCAGAGGAAGATGCGGACGTCAT
TGCTCAGTTCGCTCCCGTGTTGTACCCTGCGGGAAGTGTAGTGGCTTTTG
ATTGGCGTATTCCTCATGCGAATGCTGCGAGGCATGTGGGCGAGGCACCT
CGACAGGTGAGCTATGGTAGTTTTTTGCCCGACGTTCCAGTCAATCGACT
GTATGCGCAGCGGCAACGCGAACGATTCCTGGCAGGCAAGCAGCCGGACG
ATCAATGGAAAGAGGACAAGGACAAAATTGAGATCTACGAGAATGCGGAG
GGAGAGGGTGTCTTTCTATTTTCTGAATTAGGGTCACGACTACTGGGGGA
TGGATATGTCGAAGACGCTATAGTCAAAGCATAA

Synonyms

Publications