jgi.p|Nanoce1779_2|581181, mRNA_2687 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581181
Unique Name	mRNA_2687
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	808
Alignment location	scaffold_5:933324..934131 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581267
Track	FilteredModels2
ProteinId	581181

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:933324..934131 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581181	gene_2687	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581181	mRNA_2687-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2687	CDS_2687	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:933324..934131-
coding sequence from alignment at scaffold_5:933324..934131-

mRNA sequence

>mRNA_2687 ID=mRNA_2687|Name=jgi.p|Nanoce1779_2|581181|organism=Nannochloropsis oceanica|type=mRNA|length=808bp
ACAGCCACAACCCCAGCCCCCCCCAAAATGGCTATGCACAAGCTTTATAT
CTTTTCCTTGGCTTTAGTGGCGGGTATGACCTGTAGCAACGCATTTGTGC
CCAAGATAGTACCCTCGTCCGGCAAAAACTCCCTTGTCGGCTGTCGAACC
CCGTCGGTTCGTTTGACCCGGCAGCACTCCCTCGCTCCCTTGCCCAAGAC
GACTTCCATGGCGCTTTTTGCGGGTAATGACAATGTGGAGGAGGAGGAGG
AGATTGGGCCCTTGGGACTGGCGGCCACCGCGCTGGGACTCGTTGCTGCA
CCCGTTGTTCTCTACTCTGAATACGTGCTGAAAACGACGGGGTGTGGTTT
GCCTGCTGGGCCTGGCGGAGCATTAGGAGCTCTCGAAGGGATTTCGTACC
TAGTCGTAGTGGGTATTGCTGGGTTTTCCACCTACAAAAAGGTCAAGACT
GGCACTGGATTGCCTGCGGGCCCTGCAGGGTTGTTGGGTGCGGTTGAGGG
CTTGAGCTTCCTTGCTGTCTTGGTGGGGGCTGTGGTTTTGGGTCTGACAA
TCAAGGACTTTGGCTCAGTCCCCGAGGCCGTGCCGGTGGATGGAGGCCGA
TGCAGTGGCATTTAAGGCATTGGATGGAGGTGTTAATGTAGAGGAAAAGA
CCCCTGAGAGGTAGATGTAAGCCAGGCTACAGACAAGAAGGGAGAGAATA
CCGAAGAGAAGAAAGCATAACAATTTGCAAACCTCATAAACTTTTGTTGG
TTTAAGTCCGTCCTTCTTCTTCCGTATCATATCCCTTCAACAACTGCTTA
TGCTTCAC

protein sequence of jgi.p|Nanoce1779_2|581181

>mRNA_2687-protein ID=mRNA_2687-protein|Name=jgi.p|Nanoce1779_2|581181|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MAMHKLYIFSLALVAGMTCSNAFVPKIVPSSGKNSLVGCRTPSVRLTRQH
SLAPLPKTTSMALFAGNDNVEEEEEIGPLGLAATALGLVAAPVVLYSEYV
LKTTGCGLPAGPGGALGALEGISYLVVVGIAGFSTYKKVKTGTGLPAGPA
GLLGAVEGLSFLAVLVGAVVLGLTIKDFGSVPEAVPVDGGRCSGI*

mRNA from alignment at scaffold_5:933324..934131-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2687 ID=mRNA_2687|Name=jgi.p|Nanoce1779_2|581181|organism=Nannochloropsis oceanica|type=mRNA|length=808bp|location=Sequence derived from alignment at scaffold_5:933324..934131- (Nannochloropsis oceanica)
ACAGCCACAACCCCAGCCCCCCCCAAAATGGCTATGCACAAGCTTTATAT
CTTTTCCTTGGCTTTAGTGGCGGGTATGACCTGTAGCAACGCATTTGTGC
CCAAGATAGTACCCTCGTCCGGCAAAAACTCCCTTGTCGGCTGTCGAACC
CCGTCGGTTCGTTTGACCCGGCAGCACTCCCTCGCTCCCTTGCCCAAGAC
GACTTCCATGGCGCTTTTTGCGGGTAATGACAATGTGGAGGAGGAGGAGG
AGATTGGGCCCTTGGGACTGGCGGCCACCGCGCTGGGACTCGTTGCTGCA
CCCGTTGTTCTCTACTCTGAATACGTGCTGAAAACGACGGGGTGTGGTTT
GCCTGCTGGGCCTGGCGGAGCATTAGGAGCTCTCGAAGGGATTTCGTACC
TAGTCGTAGTGGGTATTGCTGGGTTTTCCACCTACAAAAAGGTCAAGACT
GGCACTGGATTGCCTGCGGGCCCTGCAGGGTTGTTGGGTGCGGTTGAGGG
CTTGAGCTTCCTTGCTGTCTTGGTGGGGGCTGTGGTTTTGGGTCTGACAA
TCAAGGACTTTGGCTCAGTCCCCGAGGCCGTGCCGGTGGATGGAGGCCGA
TGCAGTGGCATTTAAGGCATTGGATGGAGGTGTTAATGTAGAGGAAAAGA
CCCCTGAGAGGTAGATGTAAGCCAGGCTACAGACAAGAAGGGAGAGAATA
CCGAAGAGAAGAAAGCATAACAATTTGCAAACCTCATAAACTTTTGTTGG
TTTAAGTCCGTCCTTCTTCTTCCGTATCATATCCCTTCAACAACTGCTTA
TGCTTCAC

Coding sequence (CDS) from alignment at scaffold_5:933324..934131-

>mRNA_2687 ID=mRNA_2687|Name=jgi.p|Nanoce1779_2|581181|organism=Nannochloropsis oceanica|type=CDS|length=588bp|location=Sequence derived from alignment at scaffold_5:933324..934131- (Nannochloropsis oceanica)
ATGGCTATGCACAAGCTTTATATCTTTTCCTTGGCTTTAGTGGCGGGTAT
GACCTGTAGCAACGCATTTGTGCCCAAGATAGTACCCTCGTCCGGCAAAA
ACTCCCTTGTCGGCTGTCGAACCCCGTCGGTTCGTTTGACCCGGCAGCAC
TCCCTCGCTCCCTTGCCCAAGACGACTTCCATGGCGCTTTTTGCGGGTAA
TGACAATGTGGAGGAGGAGGAGGAGATTGGGCCCTTGGGACTGGCGGCCA
CCGCGCTGGGACTCGTTGCTGCACCCGTTGTTCTCTACTCTGAATACGTG
CTGAAAACGACGGGGTGTGGTTTGCCTGCTGGGCCTGGCGGAGCATTAGG
AGCTCTCGAAGGGATTTCGTACCTAGTCGTAGTGGGTATTGCTGGGTTTT
CCACCTACAAAAAGGTCAAGACTGGCACTGGATTGCCTGCGGGCCCTGCA
GGGTTGTTGGGTGCGGTTGAGGGCTTGAGCTTCCTTGCTGTCTTGGTGGG
GGCTGTGGTTTTGGGTCTGACAATCAAGGACTTTGGCTCAGTCCCCGAGG
CCGTGCCGGTGGATGGAGGCCGATGCAGTGGCATTTAA

Synonyms

Publications