jgi.p|Nanoce1779_2|581173, mRNA_2686 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581173
Unique Name	mRNA_2686
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	876
Alignment location	scaffold_5:930473..931484 +

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Properties


Property Name	Value
TranscriptId	581259
Track	FilteredModels2
ProteinId	581173

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:930473..931484 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581173	gene_2686	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581173	mRNA_2686-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2686	CDS_2686	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:930473..931484+
coding sequence from alignment at scaffold_5:930473..931484+

mRNA sequence

>mRNA_2686 ID=mRNA_2686|Name=jgi.p|Nanoce1779_2|581173|organism=Nannochloropsis oceanica|type=mRNA|length=876bp
AGTCGAGCCGTTGCTCTTGAAAGGAAGCCTTTGCTTTGCCCTGTTATGGG
CTGACTACATACAGTACACGCACACGCACGCGCACCACACGTTGTGGCCG
TCCACATATGCCTCGTGTGGCTCTGTGCGGTACGCATAGCTTGTGCTGGG
TCTGTGCGCCGGTATCTTGGGTCTGCGTTGGGAAGAGGGCAAGCGCACTC
TCCAAGAACAGTCTTCGATCGAAACTCCCGCTCATACACAACTACAGCAC
AGCCCCCGGCACCACCATACACCGACCAAGACTCACGACAGTATGCATGA
GTGTGTGTAACAAGTTTCTGACGGTGGTGTGGGTACTGGCGGGGTTGAGG
AAAGTGTCCGTAGGCGCGTCTGTTTTGGTTGCACTGCGTTTGCATCTGAC
GAAGCACGAGGATGAGCACCCTCACAGTGACACAGGCCTCCATCATGCCT
GCCCCGCGCCGTCTTACCCACACCCACAGTCCTCACGGATATTCATTTTA
TACAGGGTGACCAGGACAGGCGATGGACAAGGCAGACGCGTCCGCCTCAC
TTTTTCAAATGCAACGACCAGCCATCTGACTTCCCTTTCCCTTGCATCCC
ATATGACAGCCAAACCAACCACCCTCCCGACCGAAATCGAGTACCAACAA
TGCAAATCTTTGTCAAGACGCTGACGGGCAAGACCATCACGCTGGACGTG
GAGCCCAGCGACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGA
GGGCATCCCCCCCGACCAGCAGCGCCTCATCTTCGCGGGGAAGCAGCTGG
AGGATGGCCGCACGCTTTCTGACTACAACATCCAGAAGGAGTCTACGCTC
CACTTGGTGCTGCGCCTGCGCGGAGG

protein sequence of jgi.p|Nanoce1779_2|581173

>mRNA_2686-protein ID=mRNA_2686-protein|Name=jgi.p|Nanoce1779_2|581173|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MPRVALCGTHSLCWVCAPVSWVCVGKRASALSKNSLRSKLPLIHNYSTAP
GTTIHRPRLTTVCMSVCNKFLTVVWVLAGLRKVSVGASVLVALRLHLTKH
EDEHPHSDTGLHHACPAPSYPHPQSSRIFILYRVTRTGDGQGRRVRLTFS
NATTSHLTSLSLASHMTAKPTTLPTEIEYQQCKSLSRR*

mRNA from alignment at scaffold_5:930473..931484+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2686 ID=mRNA_2686|Name=jgi.p|Nanoce1779_2|581173|organism=Nannochloropsis oceanica|type=mRNA|length=1012bp|location=Sequence derived from alignment at scaffold_5:930473..931484+ (Nannochloropsis oceanica)
AGTCGAGCCGTTGCTCTTGAAAGGAAGCCTTTGCTTTGCCCTGTTATGGG
CTGACTACATACAGTACACGCACACGCACGCGCACCACACGTTGTGGCCG
TCCACATATGCCTCGTGTGGCTCTGTGCGGTACGCATAGCTTGTGCTGGG
TCTGTGCGCCGGTATCTTGGGTCTGCGTTGGGAAGAGGGCAAGCGCACTC
TCCAAGAACAGTCTTCGATCGAAACTCCCGCTCATACACAACTACAGCAC
AGCCCCCGGCACCACCATACACCGACCAAGACTCACGACAGTATGCATGA
GTGTGTGTAACAAGTTTCTGACGGTGGTGTGGGTACTGGCGGGGTTGAGG
AAAGTGTCCGTAGGCGCGTCTGTTTTGGTTGCACTGCGTTTGCATCTGAC
GAAGCACGAGGATGAGCACCCTCACAGTGACACAGGCCTCCATCATGCCT
GCCCCGCGCCGTCTTACCCACACCCACAGTCCTCACGGATATTCATTTTA
TACAGGGTGACCAGGACAGGCGATGGACAAGGCAGACGCGTCCGCCTCAC
TTTTTCAAATGCAACGACCAGCCATCTGACTTCCCTTTCCCTTGCATCCC
ATATGACAGCCAAACCAACCACCCTCCCGACCGAAATCGAGTACCAACAA
TGCAAATCTTTGTCAAGACGCTGACGGTACGTATTTATACAGCCATCTGG
GCGCATAGGGATGCGGGTGAATGCGACACATGGTTTTTAAAAGGAGTCTG
GACGACCAAGATTTCCTAAAAAATCCTACATCCCCATAACTCTTACGATA
ATTTACTGACAGGGCAAGACCATCACGCTGGACGTGGAGCCCAGCGACAC
GATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCG
ACCAGCAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACG
CTTTCTGACTACAACATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCG
CCTGCGCGGAGG

Coding sequence (CDS) from alignment at scaffold_5:930473..931484+

>mRNA_2686 ID=mRNA_2686|Name=jgi.p|Nanoce1779_2|581173|organism=Nannochloropsis oceanica|type=CDS|length=567bp|location=Sequence derived from alignment at scaffold_5:930473..931484+ (Nannochloropsis oceanica)
ATGCCTCGTGTGGCTCTGTGCGGTACGCATAGCTTGTGCTGGGTCTGTGC
GCCGGTATCTTGGGTCTGCGTTGGGAAGAGGGCAAGCGCACTCTCCAAGA
ACAGTCTTCGATCGAAACTCCCGCTCATACACAACTACAGCACAGCCCCC
GGCACCACCATACACCGACCAAGACTCACGACAGTATGCATGAGTGTGTG
TAACAAGTTTCTGACGGTGGTGTGGGTACTGGCGGGGTTGAGGAAAGTGT
CCGTAGGCGCGTCTGTTTTGGTTGCACTGCGTTTGCATCTGACGAAGCAC
GAGGATGAGCACCCTCACAGTGACACAGGCCTCCATCATGCCTGCCCCGC
GCCGTCTTACCCACACCCACAGTCCTCACGGATATTCATTTTATACAGGG
TGACCAGGACAGGCGATGGACAAGGCAGACGCGTCCGCCTCACTTTTTCA
AATGCAACGACCAGCCATCTGACTTCCCTTTCCCTTGCATCCCATATGAC
AGCCAAACCAACCACCCTCCCGACCGAAATCGAGTACCAACAATGCAAAT
CTTTGTCAAGACGCTGA

Synonyms

Publications