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Properties
| Property Name | Value |
|---|
| TranscriptId | 552656 |
| Track | FilteredModels2 |
| ProteinId | 552570 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:927323..930465 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2685 ID=mRNA_2685|Name=jgi.p|Nanoce1779_2|552570|organism=Nannochloropsis oceanica|type=mRNA|length=1809bp
GTCAAGCTCGAGAGCGACCTCCTCCCTCTCTGGTCTTCTTGTCTCATATA
TCTGGACGTAGAGATAAAGATGTCTCCGCTTTAAATACCCAGCGCCAGAA
ATATCCTGCATCCCCTTGTCTTGAAAAAAGTGTTTTTCTGCCCCCCTCCT
TCTCCCTTCCTCCACCCACCCAGCCATCATTACTCCCCCCATCAACCCCT
CATCATCCACCCACCACTCGACAAAAGGAATGCCTCTTTAGCACAAACCA
TCATGTCCTCCACGAACAAACCGGCCGTGAAGAAGACCCGCTTCCAAAAG
GAAAAGGAAGAACGGGAGGCGAAGAAGCGGCAGGAAGATGCGGAAGCCGC
CAAGGTCTATGAGCAATTTGTGGCTTCGTTTGACGCTGGCGATTCTAGTA
ATAGCAGGGGAAACAAACGCTTCGTACGGGCCCGAAACAGCCGCGGTCAC
CGTGAGGGATCTCCCGATCACTACCAGCCTCCCTTGCCCCCTCCTCCTTC
TCCCCCTTCCTCCAGCGATGCGGCTTACCCTCCTCGGCTAGGCATGCCCA
CCCAGCCCAATGCCGTCAACATAATCGGCAGCAGCAGTACCAACGAGAGG
AACAGCAGCGGCAGTGTGCTTCCACCCTCTTCGCTACCCAGCAACACCAA
GAAAGGAAGCCGGCAGATCGATGCGTTTTTGGAGGAAATCAAGCAAAAGC
AAGAATTGGGGATTGTTGTGAGCGAACGAGATTTACCGGGCTCTTATGAT
GATGGCGACCCGGGCACGACTAACTTGCACGTGAGTAATTTGTCGCCAAC
GACGACGGAGGAGAGGCTGCAAGAGGTATTCGGGCGGTTCGGTCGGGTGT
ATTCGGTGAAGATCATGTGGCCTCGAACCGAGGACGAACGTGCCCGGGGA
CGCAACACGGGCTTTGTCTCGTTCCATTCCAGGGCGGATGCGGAGGACGC
CAAGGAGCAATTGCATGATTGGGAGTTAGATGGACACCGGTTGGGCATCG
GGTGGAGTAAGGCCGTCAAGAAGCTCGCCAATCTCTCCCCGGCGACGATA
GTGGGAGGGGGGCAAGGGCACGTAGCTCCCCCTCCTGGGATGCTTTTGTC
TACCCCTGGAGGGAGAGAGGGGAGCGAGGCGGAGGAGGGTGGGAGGGAGG
GCTTGAACGAAGGGAGGAGAGGGGACGAGGGAGGGAGGGAGTGAGGGAAG
AGGTGAAGCCGGCGGCCGCGTATTTGACTGGACGGCAGGCGGAACGGGCT
AGGGACGTAGCCAGAGGAAGGGCACCTTCGGCGAATCTGTCGGTGAAGGA
CCAAGAAGCATTTGTGTCTATTTTGAAGGGGTTGGATGGAGGGAGGGAGA
GGGTGAAGCAAGGGATGGGGTTTGCATTCGATCATGCCGACGCCAGTCAG
GACGTGGTTGATATGCTCAAAACATCTATATGTGACGAGGGGGGTCTGCC
GGAGGAAAAATCCGCAGGGATCCCTCCCTCCCTCCCTCTCCGCCTTGCGC
GGTTGCACCTGCTGTCGGACATTTTGTACAACTCGTCTGCAGCCGTGCGG
AACGCCTCTACGTACCGAACCTACCTCCAACTGGCCCTTCCTTACGTGTT
TGCAGCTTTTCACTCCTCCTTAGCGGCACTGGGGAGGATAACCAAGCAGC
ACGTCGAGGAGAAATTGATTCGTGTGTTGAGAGTGTGGGAGGGATGGTCT
ATCTACCCTCCGTTATTTCTGGTCGGTTTAGAAGCCACCTTGATCGTGGA
TCTTGGAGGGGAGGGAGAAGAGGGGAAAGGAGGAAAGGAGGAGGAGGAGT
TGGAGAAGG back to topprotein sequence of jgi.p|Nanoce1779_2|552570 >mRNA_2685-protein ID=mRNA_2685-protein|Name=jgi.p|Nanoce1779_2|552570|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MSSTNKPAVKKTRFQKEKEEREAKKRQEDAEAAKVYEQFVASFDAGDSSN
SRGNKRFVRARNSRGHREGSPDHYQPPLPPPPSPPSSSDAAYPPRLGMPT
QPNAVNIIGSSSTNERNSSGSVLPPSSLPSNTKKGSRQIDAFLEEIKQKQ
ELGIVVSERDLPGSYDDGDPGTTNLHVSNLSPTTTEERLQEVFGRFGRVY
SVKIMWPRTEDERARGRNTGFVSFHSRADAEDAKEQLHDWELDGHRLGIG
WSKAVKKLANLSPATIVGGGQGHVAPPPGMLLSTPGGREGSEAEEGGREG
LNEGRRGDEGGRE* back to topmRNA from alignment at scaffold_5:927323..930465- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2685 ID=mRNA_2685|Name=jgi.p|Nanoce1779_2|552570|organism=Nannochloropsis oceanica|type=mRNA|length=3143bp|location=Sequence derived from alignment at scaffold_5:927323..930465- (Nannochloropsis oceanica)
GTCAAGCTCGAGAGCGACCTCCTCCCTCTCTGGTCTTCTTGTCTCATATA
TCTGGACGTAGAGATAAAGATGTCTCCGCTTTAAATACCCAGCGCCAGAA
ATATCCTGCATCCCCTTGTCTTGAAAAAAGTGTTTTTCTGCCCCCCTCCT
TCTCCCTTCCTCCACCCACCCAGCCATCATTACTCCCCCCATCAACCCCT
CATCATCCACCCACCACTCGACAAAAGGAATGCCTCTTTAGCACAAACCA
TCATGTCCTCCACGAACAAACCGGCCGTGAAGAAGACCCGCTTCCAAAAG
GAAAAGGAAGAACGGGAGGCGAAGAAGCGGCAGGAAGATGCGGAAGCCGC
CAAGGTCTATGAGCAATTTGTGGCTTCGTTTGACGCTGGCGATTCTAGTA
ATAGCAGGGGAAACAAACGCTTCGTACGGGCCCGAAACAGCCGCGGTCAC
CGTGAGGGATCTCCCGATCACTACCAGCCTCCCTTGCCCCCTCCTCCTTC
TCCCCCTTCCTCCAGCGATGCGGCTTACCCTCCTCGGCTAGGCATGCCCA
CCCAGCCCAATGCCGTCAACATAATCGGCAGCAGCAGTACCAACGAGAGG
AACAGCAGCGGCAGTGTGCTTCCACCCTCTTCGCTACCCAGCAACACCAA
GAAAGGAAGCCGGCAGATCGATGCGTTTTTGGAGGAAATCAAGCAAAAGC
AAGAATTGGGGATTGTTGTGAGCGAACGAGATTTACCGGGCTCTTATGAT
GATGGCGACCCGGGCACGACTAACTTGCACGTGAGTAATTTGTCGCCAAC
GACGACGGAGGAGAGGCTGCAAGAGGTATTCGGGCGGTTCGGTCGGGTGT
ATTCGGTGAAGATCATGTGGCCTCGAACCGAGGACGAACGTGCCCGGGGA
CGCAACACGGGCTTTGTCTCGTTCCATTCCAGGGCGGATGCGGAGGACGC
CAAGGAGCAATTGCATGATTGGGAGTTAGATGGACACCGGTTGGGCATCG
GGTGGAGTAAGGCCGTCAAGAAGCTCGCCAATCTCTCCCCGGCGACGATA
GTGGGAGGGGGGCAAGGGCACGTAGCTCCCCCTCCTGGGATGCTTTTGTC
TACCCCTGGAGGTGAGGATGGGGTGAGTATGCACCCCCTGGTTCCCCTAC
AATTTTGTCACGATCCGGCTGGGGACGGGAGAGGAGGGCGAGGAGAGGGA
GCAGCAGTAACAGGAGGAGGAGGAGCGATGCCTTTCCTGCCGCCGCTACC
ACCACCACCAGCAGGAGTACCACCATCACCACCAACAGCGACAGCAGCAG
TAGTGGAAGGTGGTGGCAGTGAAGGAGGAATGCCTCGCACTACAGCTGTA
GCGGCCGTAGAGGCAGCCCTGGGAGGATCTTCTAGGACCACGGGAGCCCC
TTCCTCCCTCCCTCCCCCCTTCTCCTCCACCTCGACTATCCTTGCCTCGT
CGTCCTCCGTCCCTTTGAATCCCCTCGAAGAAGCCTTGCGCCGTGCCAGC
AATATAAGCAGTCGTGTCGCGCACCAGCCATTGCCCTCCTCCTCTGCAGG
GGGCGAGAGACGACTGGAGGACGACAGAAGCAGGGACCGGGGGGGAGGTC
GAGAAGGGGATGGGGGGGGGGGGGGGGGAGGGAGGAAGGGGTCGTTCGGA
AGGAAGGGGTTGGGAGTGGGGGAGGGAGAGATATGGGCACCATTCACGCT
CTAGGTCCCCCGATCGCGACAGGGAGCGGCGGAAGAGGGAGGAGGAGGAG
AGGGAAAGGGAGAGGAAGGAGAAAGAGGAGAGGGAGAAAGAGCGCGAACC
CGGACCCGAGGACATCATGCTCGCTGTGCCGTTCCCACCTGATGCGGACG
TTGAATTTTTGATCTCACGCGTGGCGAGATATGTGGCTAAGGATGGGGCT
CCATTGGAGGAGCGGTTGAAGGTGAGCGAGAGCCAGAACCCTCTCTTTCG
GTTTCTGTGGGAGGAGGCGTCGCCGGAGGGCGTGTTTTACCGGTGGCGCG
TGTTTAGCCTTTTGATGGGGGACAGTGAAACGTATTGGAGGGAGAAACCC
TTTCAGATGACGACCACAGGGCCTTATTGGGTTCCTCCCCCCATACCAGA
CGAGTGGCGAAAGATGAGGGAGAAAAAGAAGGAGGAGGCCGGGGAGGAGG
GAAAGGAGGAAAAGCAGGCACGAGACGAGAAGATGTTGGTGTCGGAGAGA
TATCGGGGGGAAGCCGCGCCGCGGAGGAGGAGTAGGAGTAGGAGTAGGAG
TAGGGAGAGAGAGAGGGGGAGGGGGACGAGTCGTAGCAGGGAAAGGGAGA
GGGACCGGCGGCGTCGGTCGAGGTCAAGAAGCAGGAGCAGGAGCAGGAGC
AGGAACAGGAGCAGGAGCAGGAGCAGGAGCAGGGAGATGAGACGTCGGCG
CCGCAGTAGAAGCTATAGCAGAAGTAGAAGTCGCAGTCGCAGCAGGGAGA
GAGGGGAGCGAGGCGGAGGAGGGTGGGAGGGAGGGCTTGAACGAAGGGAG
GAGAGGGGACGAGGGAGGGAGGGAGTGAGGGAAGAGGTGAAGCCGGCGGC
CGCGTATTTGACTGGACGGCAGGCGGAACGGGCTAGGGACGTAGCCAGAG
GAAGGGCACCTTCGGCGAATCTGTCGGTGAAGGACCAAGAAGCATTTGTG
TCTATTTTGAAGGGGTTGGATGGAGGGAGGGAGAGGGTGAAGCAAGGGAT
GGGGTTTGCATTCGATCATGCCGACGCCAGTCAGGACGTGGTTGATATGC
TCAAAACATCTATATGTGACGAGGGGGGTCTGCCGGAGGAAAAATCCGCA
GGGATCCCTCCCTCCCTCCCTCTCCGCCTTGCGCGGTTGCACCTGCTGTC
GGACATTTTGTACAACTCGTCTGCAGCCGTGCGGAACGCCTCTACGTACC
GAACCTACCTCCAACTGGCCCTTCCTTACGTGTTTGCAGCTTTTCACTCC
TCCTTAGCGGCACTGGGGAGGATAACCAAGCAGCACGTCGAGGAGAAATT
GATTCGTGTGTTGAGAGTGTGGGAGGGATGGTCTATCTACCCTCCGTTAT
TTCTGGTCGGTTTAGAAGCCACCTTGATCGTGGATCTTGGAGGGGAGGGA
GAAGAGGGGAAAGGAGGAAAGGAGGAGGAGGAGTTGGAGAAGG back to topCoding sequence (CDS) from alignment at scaffold_5:927323..930465- >mRNA_2685 ID=mRNA_2685|Name=jgi.p|Nanoce1779_2|552570|organism=Nannochloropsis oceanica|type=CDS|length=1884bp|location=Sequence derived from alignment at scaffold_5:927323..930465- (Nannochloropsis oceanica)
GGAGAGAGGGGAGCGAGGCGGAGGAGGGTGGGAGGGAGGGCTTGAACGAA
GGGAGGAGAGGGGACGAGGGAGGGAGGGAGTGAATGTCCTCCACGAACAA
ACCGGCCGTGAAGAAGACCCGCTTCCAAAAGGAAAAGGAAGAACGGGAGG
CGAAGAAGCGGCAGGAAGATGCGGAAGCCGCCAAGGTCTATGAGCAATTT
GTGGCTTCGTTTGACGCTGGCGATTCTAGTAATAGCAGGGGAAACAAACG
CTTCGTACGGGCCCGAAACAGCCGCGGTCACCGTGAGGGATCTCCCGATC
ACTACCAGCCTCCCTTGCCCCCTCCTCCTTCTCCCCCTTCCTCCAGCGAT
GCGGCTTACCCTCCTCGGCTAGGCATGCCCACCCAGCCCAATGCCGTCAA
CATAATCGGCAGCAGCAGTACCAACGAGAGGAACAGCAGCGGCAGTGTGC
TTCCACCCTCTTCGCTACCCAGCAACACCAAGAAAGGAAGCCGGCAGATC
GATGCGTTTTTGGAGGAAATCAAGCAAAAGCAAGAATTGGGGATTGTTGT
GAGCGAACGAGATTTACCGGGCTCTTATGATGATGGCGACCCGGGCACGA
CTAACTTGCACGTGAGTAATTTGTCGCCAACGACGACGGAGGAGAGGCTG
CAAGAGGTATTCGGGCGGTTCGGTCGGGTGTATTCGGTGAAGATCATGTG
GCCTCGAACCGAGGACGAACGTGCCCGGGGACGCAACACGGGCTTTGTCT
CGTTCCATTCCAGGGCGGATGCGGAGGACGCCAAGGAGCAATTGCATGAT
TGGGAGTTAGATGGACACCGGTTGGGCATCGGGTGGAGTAAGGCCGTCAA
GAAGCTCGCCAATCTCTCCCCGGCGACGATAGTGGGAGGGGGGCAAGGGC
ACGTAGCTCCCCCTCCTGGGATGCTTTTGTCTACCCCTGGAGGGAGAGAG
GGGAGCGAGGCGGAGGAGGGTGGGAGGGAGGGCTTGAACGAAGGGAGGAG
AGGGGACGAGGGAGGGAGGGAGTGAATGTCCTCCACGAACAAACCGGCCG
TGAAGAAGACCCGCTTCCAAAAGGAAAAGGAAGAACGGGAGGCGAAGAAG
CGGCAGGAAGATGCGGAAGCCGCCAAGGTCTATGAGCAATTTGTGGCTTC
GTTTGACGCTGGCGATTCTAGTAATAGCAGGGGAAACAAACGCTTCGTAC
GGGCCCGAAACAGCCGCGGTCACCGTGAGGGATCTCCCGATCACTACCAG
CCTCCCTTGCCCCCTCCTCCTTCTCCCCCTTCCTCCAGCGATGCGGCTTA
CCCTCCTCGGCTAGGCATGCCCACCCAGCCCAATGCCGTCAACATAATCG
GCAGCAGCAGTACCAACGAGAGGAACAGCAGCGGCAGTGTGCTTCCACCC
TCTTCGCTACCCAGCAACACCAAGAAAGGAAGCCGGCAGATCGATGCGTT
TTTGGAGGAAATCAAGCAAAAGCAAGAATTGGGGATTGTTGTGAGCGAAC
GAGATTTACCGGGCTCTTATGATGATGGCGACCCGGGCACGACTAACTTG
CACGTGAGTAATTTGTCGCCAACGACGACGGAGGAGAGGCTGCAAGAGGT
ATTCGGGCGGTTCGGTCGGGTGTATTCGGTGAAGATCATGTGGCCTCGAA
CCGAGGACGAACGTGCCCGGGGACGCAACACGGGCTTTGTCTCGTTCCAT
TCCAGGGCGGATGCGGAGGACGCCAAGGAGCAATTGCATGATTGGGAGTT
AGATGGACACCGGTTGGGCATCGGGTGGAGTAAGGCCGTCAAGAAGCTCG
CCAATCTCTCCCCGGCGACGATAGTGGGAGGGGGGCAAGGGCACGTAGCT
CCCCCTCCTGGGATGCTTTTGTCTACCCCTGGAG back to top
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