jgi.p|Nanoce1779_2|514789, mRNA_2684 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|514789
Unique NamemRNA_2684
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length735
Alignment locationscaffold_5:927180..927914 -

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Properties
Property NameValue
TranscriptId514875
TrackFilteredModels2
ProteinId514789
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:927180..927914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|514789gene_2684Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2684CDS_2684Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|514789mRNA_2684-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2684 ID=mRNA_2684|Name=jgi.p|Nanoce1779_2|514789|organism=Nannochloropsis oceanica|type=mRNA|length=735bp
GCGTATTTGACTGGACGGCAGGCGGAACGGGCTAGGGACGTAGCCAGAGG
AAGGGCACCTTCGGCGAATCTGTCGGTGAAGGACCAAGAAGCATTTGTGT
CTATTTTGAAGGGGTTGGATGGAGGGAGGGAGAGGGTGAAGCAAGGGATG
GGGTTTGCATTCGATCATGCCGACGCCAGTCAGGACGTGGTTGATATGCT
CAAAACATCTATATGTGACGAGGGGGGTCTGCCGGAGGAAAAATCCGCAG
GGATCCCTCCCTCCCTCCCTCTCCGCCTTGCGCGGTTGCACCTGCTGTCG
GACATTTTGTACAACTCGTCTGCAGCCGTGCGGAACGCCTCTACGTACCG
AACCTACCTCCAACTGGCCCTTCCTTACGTGTTTGCAGCTTTTCACTCCT
CCTTAGCGGCACTGGGGAGGATAACCAAGCAGCACGTCGAGGAGAAATTG
ATTCGTGTGTTGAGAGTGTGGGAGGGATGGTCTATCTACCCTCCGTTATT
TCTGGTCGGTTTAGAAGCCACCTTGATCGTGGATCTTGGAGGGGAGGGAG
AAGAGGGGAAAGGAGGAAAGGAGGAGGAGGAGTTGGAGAAGGAAAGGGAT
GCGTTGATACGCCGGGCACGGCAGGCGGGCTTGGTAACAGAGGGGTCGCT
GGGGGTGGTGGTAAGGAGGATGAAGAGGTTGGATGAGTATATCAAGGAAA
GGGCTACTGGAGGAGAGGGAGGAGGAGGAGGAAGA
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protein sequence of jgi.p|Nanoce1779_2|514789

>mRNA_2684-protein ID=mRNA_2684-protein|Name=jgi.p|Nanoce1779_2|514789|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
AYLTGRQAERARDVARGRAPSANLSVKDQEAFVSILKGLDGGRERVKQGM
GFAFDHADASQDVVDMLKTSICDEGGLPEEKSAGIPPSLPLRLARLHLLS
DILYNSSAAVRNASTYRTYLQLALPYVFAAFHSSLAALGRITKQHVEEKL
IRVLRVWEGWSIYPPLFLVGLEATLIVDLGGEGEEGKGGKEEEELEKERD
ALIRRARQAGLVTEGSLGVVVRRMKRLDEYIKERATGGEGGGGGR
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mRNA from alignment at scaffold_5:927180..927914-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2684 ID=mRNA_2684|Name=jgi.p|Nanoce1779_2|514789|organism=Nannochloropsis oceanica|type=mRNA|length=735bp|location=Sequence derived from alignment at scaffold_5:927180..927914- (Nannochloropsis oceanica)
GCGTATTTGACTGGACGGCAGGCGGAACGGGCTAGGGACGTAGCCAGAGG
AAGGGCACCTTCGGCGAATCTGTCGGTGAAGGACCAAGAAGCATTTGTGT
CTATTTTGAAGGGGTTGGATGGAGGGAGGGAGAGGGTGAAGCAAGGGATG
GGGTTTGCATTCGATCATGCCGACGCCAGTCAGGACGTGGTTGATATGCT
CAAAACATCTATATGTGACGAGGGGGGTCTGCCGGAGGAAAAATCCGCAG
GGATCCCTCCCTCCCTCCCTCTCCGCCTTGCGCGGTTGCACCTGCTGTCG
GACATTTTGTACAACTCGTCTGCAGCCGTGCGGAACGCCTCTACGTACCG
AACCTACCTCCAACTGGCCCTTCCTTACGTGTTTGCAGCTTTTCACTCCT
CCTTAGCGGCACTGGGGAGGATAACCAAGCAGCACGTCGAGGAGAAATTG
ATTCGTGTGTTGAGAGTGTGGGAGGGATGGTCTATCTACCCTCCGTTATT
TCTGGTCGGTTTAGAAGCCACCTTGATCGTGGATCTTGGAGGGGAGGGAG
AAGAGGGGAAAGGAGGAAAGGAGGAGGAGGAGTTGGAGAAGGAAAGGGAT
GCGTTGATACGCCGGGCACGGCAGGCGGGCTTGGTAACAGAGGGGTCGCT
GGGGGTGGTGGTAAGGAGGATGAAGAGGTTGGATGAGTATATCAAGGAAA
GGGCTACTGGAGGAGAGGGAGGAGGAGGAGGAAGA
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Coding sequence (CDS) from alignment at scaffold_5:927180..927914-

>mRNA_2684 ID=mRNA_2684|Name=jgi.p|Nanoce1779_2|514789|organism=Nannochloropsis oceanica|type=CDS|length=735bp|location=Sequence derived from alignment at scaffold_5:927180..927914- (Nannochloropsis oceanica)
GCGTATTTGACTGGACGGCAGGCGGAACGGGCTAGGGACGTAGCCAGAGG
AAGGGCACCTTCGGCGAATCTGTCGGTGAAGGACCAAGAAGCATTTGTGT
CTATTTTGAAGGGGTTGGATGGAGGGAGGGAGAGGGTGAAGCAAGGGATG
GGGTTTGCATTCGATCATGCCGACGCCAGTCAGGACGTGGTTGATATGCT
CAAAACATCTATATGTGACGAGGGGGGTCTGCCGGAGGAAAAATCCGCAG
GGATCCCTCCCTCCCTCCCTCTCCGCCTTGCGCGGTTGCACCTGCTGTCG
GACATTTTGTACAACTCGTCTGCAGCCGTGCGGAACGCCTCTACGTACCG
AACCTACCTCCAACTGGCCCTTCCTTACGTGTTTGCAGCTTTTCACTCCT
CCTTAGCGGCACTGGGGAGGATAACCAAGCAGCACGTCGAGGAGAAATTG
ATTCGTGTGTTGAGAGTGTGGGAGGGATGGTCTATCTACCCTCCGTTATT
TCTGGTCGGTTTAGAAGCCACCTTGATCGTGGATCTTGGAGGGGAGGGAG
AAGAGGGGAAAGGAGGAAAGGAGGAGGAGGAGTTGGAGAAGGAAAGGGAT
GCGTTGATACGCCGGGCACGGCAGGCGGGCTTGGTAACAGAGGGGTCGCT
GGGGGTGGTGGTAAGGAGGATGAAGAGGTTGGATGAGTATATCAAGGAAA
GGGCTACTGGAGGAGAGGGAGGAGGAGGAGGAAGA
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Synonyms
Publications