jgi.p|Nanoce1779_2|581164, mRNA_2683 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581164
Unique Name	mRNA_2683
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1494
Alignment location	scaffold_5:923558..925580 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581250
Track	FilteredModels2
ProteinId	581164

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:923558..925580 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581164	gene_2683	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581164	mRNA_2683-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2683	CDS_2683	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:923558..925580+
coding sequence from alignment at scaffold_5:923558..925580+

mRNA sequence

>mRNA_2683 ID=mRNA_2683|Name=jgi.p|Nanoce1779_2|581164|organism=Nannochloropsis oceanica|type=mRNA|length=1494bp
ACAACAGAGCTGTCTGCTTGTCGATGGGGCATTGCAGGGTGCGAAGCCTG
ACTTCTGGGGCATAACATTGGCCACCGGGCAAGTAACGCGATCGAACTTC
TAGTCGAAGTGATTATCTGCCAGGGTTCACAATAGCTACGCCTAGGCATG
GGTAGAGCGATGGCGACACACTCAGCTACGAGTAGGAGCATCAGCTCTGC
CATCAGACTACGGCGCTGGATCTGCCGATCGCCTTTTGCGAAAGCACACT
CCACATGACGCGGAAAACACGATGGATGCAAGCACCTTTTTCCCCTCTTC
CCACACCCGAGGAACCAGCTCTCATGAGTGCTGTGCACATCTAACAATGC
TACGAAATATGGAATGACGTCTCTTCCTTCTCTTCACCCCTTCATTCCGC
ACAGAGAGAGAGAGGGAGAGAGGCGTCTCTTCCATTAAGTCAAGCATGGG
GGCGCACCTGGACAAGCCCATCACCGAAAAAGAGAATTACGAGAGCGAGG
CACATGGGTTAAAATTTGGTGCAGCGGCCATGCAGGGATGGAGAGTAGAG
ATGGAGGACGCACACACCATCGTCGAGACAATTGACCCCGAGCTGGACGG
ACATTCCTTTATAGCAGTCTACGATGGCCATGGGGGTCAATACTCGGCAA
TTTACTGCGGGGAGCACATGGTCTCGTTTTTAAAGAAGACCAAGGGTTTT
GAGGACTACAAGAAGACGAGAGACGTAACGCACCTGCGGTCCGCCATTCA
CGCCGCTTTCCTCGACCTGGACGAGGTTCTGAAACGACAAGACGAATTTG
TGTCCAAGCAGGACACCAGCGGCTGCACCGCCATATGCGCCATAATCACA
CCCACGCATGTAGTGGTCGGCAATGCCGGGGACTCCCGGGGAGTGATCTT
CTCATCCGATGGAGCCAAGCAGCTGTCAAGGGACCATAAGCCCTACCTGG
ACGATGAACGGAAGAGGATCGAGGAGGCGGGAGGGATGGTAAGCATGCAG
AGGGTCGATGGTGATTTGGCCTTGTCCCGGTCCATCGGGGATTTCCAATA
CAAAGACAGGCATCTCCCGCCTGAGCGTCAGAAAGTCACCGCCGTACCCG
AAATTGAGATTCACACGCGGAACGCAGGCAAAGACGAAATGCTCCTCTTG
GCCTGTGATGGTGTGTGGGACGTATGCGAGAATGAGGAAGCAGGGCAGAT
TTTGAAGGAGGTATTGAACGACGGCGAAACGCGCATGGCCTTGGTAGCAG
AAGAGCTGCTTGACCAGTGTTTATTCAGGTATAGCAAGGACAATATTTCG
GCGGTTGTGGTGGGGTTTGAGGGAATGGCACGGCATGCGAAGGAGGGGGA
GGGTGTGGAGGGGCGGCGAAGGAGGAGGCAGCAGCAAGAGGAGGGGGGAG
GTAGGGGAGGAAGTGGGGGCTCCGGAGATGAGGCCGAGAGTTCGTAAGGG
GGGGAAAGTGTGGGAGGAGAGGAGGGAGGAGGGGAGGGAGGGCA

protein sequence of jgi.p|Nanoce1779_2|581164

>mRNA_2683-protein ID=mRNA_2683-protein|Name=jgi.p|Nanoce1779_2|581164|organism=Nannochloropsis oceanica|type=polypeptide|length=334bp
MGAHLDKPITEKENYESEAHGLKFGAAAMQGWRVEMEDAHTIVETIDPEL
DGHSFIAVYDGHGGQYSAIYCGEHMVSFLKKTKGFEDYKKTRDVTHLRSA
IHAAFLDLDEVLKRQDEFVSKQDTSGCTAICAIITPTHVVVGNAGDSRGV
IFSSDGAKQLSRDHKPYLDDERKRIEEAGGMVSMQRVDGDLALSRSIGDF
QYKDRHLPPERQKVTAVPEIEIHTRNAGKDEMLLLACDGVWDVCENEEAG
QILKEVLNDGETRMALVAEELLDQCLFRYSKDNISAVVVGFEGMARHAKE
GEGVEGRRRRRQQQEEGGGRGGSGGSGDEAESS*

mRNA from alignment at scaffold_5:923558..925580+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2683 ID=mRNA_2683|Name=jgi.p|Nanoce1779_2|581164|organism=Nannochloropsis oceanica|type=mRNA|length=2023bp|location=Sequence derived from alignment at scaffold_5:923558..925580+ (Nannochloropsis oceanica)
ACAACAGAGCTGTCTGCTTGTCGATGGGGCATTGCAGGGTGCGAAGCCTG
ACTTCTGGGGCATAACATTGGCCACCGGGCAAGTAACGCGATCGAACTTC
TAGTCGAAGTGATTATCTGCCAGGGTTCACAATAGCTACGCCTAGGCATG
GGTAGAGCGATGGCGACACACTCAGCTACGAGTAGGAGCATCAGCTCTGC
CATCAGACTACGGCGCTGGATCTGCCGATCGCCTTTTGCGAAAGCACACT
CCACATGACGCGGAAAACACGATGGATGCAAGCACCTTTTTCCCCTCTTC
CCACACCCGAGGAACCAGCTCTCATGAGTGCTGTGCACATCTAACAATGC
TACGAAATATGGAATGACGTCTCTTCCTTCTCTTCACCCCTTCATTCCGC
ACAGAGAGAGAGAGGGAGAGAGGCGTCTCTTCCATTAAGTCAAGCATGGG
GGCGCACCTGGACAAGCCCATCACCGAAAAAGAGAATTACGAGAGCGAGG
CACATGGGTTAAAATTTGGTGCAGCGGCCATGCAGGTAGGCCTGTCTGAT
ACATGCGATCCTGACTTAAAAGACTGATTTGTGAGGTCCACCTCACCACA
GCCAAACTTACCCCACACACAATTCGAAACTCATGAACGAACAGGGATGG
AGAGTAGAGATGGAGGACGCACACACCATCGTCGAGACAATTGGTAAGAA
GACTTGAGAGGCGAGGGAGGAGGGAAGTAACTCTCAGATGATAGAAAAAT
CTTCTACATGCCCACCACCATCCTAACTCTAACCTTAAGACACGAAGGAA
CCACAACCCTAATCCACACATTCTTCTTCTTTCTTCTCTCCCTTCTTCCC
TCCTTGCATCAGACCCCGAGCTGGACGGACATTCCTTTATAGCAGTCTAC
GATGGCCATGGGGGTCAATACTCGGCAATTTACTGCGGGGAGCACATGGT
CTCGTTTTTAAAGAAGACCAAGGGTTTTGAGGACTACAAGAAGACGAGAG
ACGTAACGCACCTGCGGGTGAGCCTCCCCTTCCTCCCTCCCTGCACTCCT
TTCCATTCCTCCCTCCCTCCCTCTTTTTTAGATTAGGTCTATCGTTTCCA
CCCACCCCTCCCAATCCCCAACCACCAGTCCGCCATTCACGCCGCTTTCC
TCGACCTGGACGAGGTTCTGAAACGACAAGACGAATTTGTGTCCAAGCAG
GACACCAGCGGCTGCACCGCCATATGCGCCATAATCACACCCACGCATGT
AGTGGTCGGCAATGCCGGGGACTCCCGGGGAGTGATCTTCTCATCCGATG
GAGCCAAGCAGCTGTCAAGGGACCATAAGCCCTACCTGGACGATGAACGG
AAGAGGATCGAGGAGGCGGGAGGGATGGTAAGCATGCAGAGGGTCGATGG
TGATTTGGCCTTGTCCCGGTCCATCGGGGATTTCCAATACAAAGACAGGT
AAGTCTCCCATCCCTCCTTCCCCTCCCTCCTTCGCTCCCTCCTCCACAGT
GTCCCCCAAAGGTCTCTTCCTTATTTTCCCCTCTTCCCTCCCCCCCTCTC
TCGCTCCCTCCCTCCTTCCTCTCTTCCTCCACGCCCAGGCATCTCCCGCC
TGAGCGTCAGAAAGTCACCGCCGTACCCGAAATTGAGATTCACACGCGGA
ACGCAGGCAAAGACGAAATGCTCCTCTTGGCCTGTGATGGTGTGTGGGAC
GTATGCGAGAATGAGGAAGCAGGGCAGATTTTGAAGGAGGTATTGAACGA
CGGCGAAACGCGCATGGCCTTGGTAGCAGAAGAGCTGCTTGACCAGTGTT
TATTCAGGTATAGCAAGGACAATATTTCGGCGGTTGTGGTGGGGTTTGAG
GGAATGGCACGGCATGCGAAGGAGGGGGAGGGTGTGGAGGGGCGGCGAAG
GAGGAGGCAGCAGCAAGAGGAGGGGGGAGGTAGGGGAGGAAGTGGGGGCT
CCGGAGATGAGGCCGAGAGTTCGTAAGGGGGGGAAAGTGTGGGAGGAGAG
GAGGGAGGAGGGGAGGGAGGGCA

Coding sequence (CDS) from alignment at scaffold_5:923558..925580+

>mRNA_2683 ID=mRNA_2683|Name=jgi.p|Nanoce1779_2|581164|organism=Nannochloropsis oceanica|type=CDS|length=5010bp|location=Sequence derived from alignment at scaffold_5:923558..925580+ (Nannochloropsis oceanica)
ATGGGGGCGCACCTGGACAAGCCCATCACCGAAAAAGAGAATTACGAGAG
CGAGGCACATGGGTTAAAATTTGGTGCAGCGGCCATGCAGGGATGGAGAG
TAGAGATGGAGGACGCACACACCATCGTCGAGACAATTGACCCCGAGCTG
GACGGACATTCCTTTATAGCAGTCTACGATGGCCATGGGGGTCAATACTC
GGCAATTTACTGCGGGGAGCACATGGTCTCGTTTTTAAAGAAGACCAAGG
GTTTTGAGGACTACAAGAAGACGAGAGACGTAACGCACCTGCGGTCCGCC
ATTCACGCCGCTTTCCTCGACCTGGACGAGGTTCTGAAACGACAAGACGA
ATTTGTGTCCAAGCAGGACACCAGCGGCTGCACCGCCATATGCGCCATAA
TCACACCCACGCATGTAGTGGTCGGCAATGCCGGGGACTCCCGGGGAGTG
ATCTTCTCATCCGATGGAGCCAAGCAGCTGTCAAGGGACCATAAGCCCTA
CCTGGACGATGAACGGAAGAGGATCGAGGAGGCGGGAGGGATGGTAAGCA
TGCAGAGGGTCGATGGTGATTTGGCCTTGTCCCGGTCCATCGGGGATTTC
CAATACAAAGACAGGCATCTCCCGCCTGAGCGTCAGAAAGTCACCGCCGT
ACCCGAAATTGAGATTCACACGCGGAACGCAGGCAAAGACGAAATGCTCC
TCTTGGCCTGTGATGGTGTGTGGGACGTATGCGAGAATGAGGAAGCAGGG
CAGATTTTGAAGGAGGTATTGAACGACGGCGAAACGCGCATGGCCTTGGT
AGCAGAAGAGCTGCTTGACCAGTGTTTATTCAGGTATAGCAAGGACAATA
TTTCGGCGGTTGTGGTGGGGTTTGAGGGAATGGCACGGCATGCGAAGGAG
GGGGAGGGTGTGGAGGGGCGGCGAAGGAGGAGGCAGCAGCAAGAGGAGGG
GGGAGGTAGGGGAGGAAGTGGGGGCTCCGGAGATGAGGCCGAGAGTTCGT
AAATGGGGGCGCACCTGGACAAGCCCATCACCGAAAAAGAGAATTACGAG
AGCGAGGCACATGGGTTAAAATTTGGTGCAGCGGCCATGCAGGGATGGAG
AGTAGAGATGGAGGACGCACACACCATCGTCGAGACAATTGACCCCGAGC
TGGACGGACATTCCTTTATAGCAGTCTACGATGGCCATGGGGGTCAATAC
TCGGCAATTTACTGCGGGGAGCACATGGTCTCGTTTTTAAAGAAGACCAA
GGGTTTTGAGGACTACAAGAAGACGAGAGACGTAACGCACCTGCGGTCCG
CCATTCACGCCGCTTTCCTCGACCTGGACGAGGTTCTGAAACGACAAGAC
GAATTTGTGTCCAAGCAGGACACCAGCGGCTGCACCGCCATATGCGCCAT
AATCACACCCACGCATGTAGTGGTCGGCAATGCCGGGGACTCCCGGGGAG
TGATCTTCTCATCCGATGGAGCCAAGCAGCTGTCAAGGGACCATAAGCCC
TACCTGGACGATGAACGGAAGAGGATCGAGGAGGCGGGAGGGATGGTAAG
CATGCAGAGGGTCGATGGTGATTTGGCCTTGTCCCGGTCCATCGGGGATT
TCCAATACAAAGACAGGCATCTCCCGCCTGAGCGTCAGAAAGTCACCGCC
GTACCCGAAATTGAGATTCACACGCGGAACGCAGGCAAAGACGAAATGCT
CCTCTTGGCCTGTGATGGTGTGTGGGACGTATGCGAGAATGAGGAAGCAG
GGCAGATTTTGAAGGAGGTATTGAACGACGGCGAAACGCGCATGGCCTTG
GTAGCAGAAGAGCTGCTTGACCAGTGTTTATTCAGGTATAGCAAGGACAA
TATTTCGGCGGTTGTGGTGGGGTTTGAGGGAATGGCACGGCATGCGAAGG
AGGGGGAGGGTGTGGAGGGGCGGCGAAGGAGGAGGCAGCAGCAAGAGGAG
GGGGGAGGTAGGGGAGGAAGTGGGGGCTCCGGAGATGAGGCCGAGAGTTC
GTAAATGGGGGCGCACCTGGACAAGCCCATCACCGAAAAAGAGAATTACG
AGAGCGAGGCACATGGGTTAAAATTTGGTGCAGCGGCCATGCAGGGATGG
AGAGTAGAGATGGAGGACGCACACACCATCGTCGAGACAATTGACCCCGA
GCTGGACGGACATTCCTTTATAGCAGTCTACGATGGCCATGGGGGTCAAT
ACTCGGCAATTTACTGCGGGGAGCACATGGTCTCGTTTTTAAAGAAGACC
AAGGGTTTTGAGGACTACAAGAAGACGAGAGACGTAACGCACCTGCGGTC
CGCCATTCACGCCGCTTTCCTCGACCTGGACGAGGTTCTGAAACGACAAG
ACGAATTTGTGTCCAAGCAGGACACCAGCGGCTGCACCGCCATATGCGCC
ATAATCACACCCACGCATGTAGTGGTCGGCAATGCCGGGGACTCCCGGGG
AGTGATCTTCTCATCCGATGGAGCCAAGCAGCTGTCAAGGGACCATAAGC
CCTACCTGGACGATGAACGGAAGAGGATCGAGGAGGCGGGAGGGATGGTA
AGCATGCAGAGGGTCGATGGTGATTTGGCCTTGTCCCGGTCCATCGGGGA
TTTCCAATACAAAGACAGGCATCTCCCGCCTGAGCGTCAGAAAGTCACCG
CCGTACCCGAAATTGAGATTCACACGCGGAACGCAGGCAAAGACGAAATG
CTCCTCTTGGCCTGTGATGGTGTGTGGGACGTATGCGAGAATGAGGAAGC
AGGGCAGATTTTGAAGGAGGTATTGAACGACGGCGAAACGCGCATGGCCT
TGGTAGCAGAAGAGCTGCTTGACCAGTGTTTATTCAGGTATAGCAAGGAC
AATATTTCGGCGGTTGTGGTGGGGTTTGAGGGAATGGCACGGCATGCGAA
GGAGGGGGAGGGTGTGGAGGGGCGGCGAAGGAGGAGGCAGCAGCAAGAGG
AGGGGGGAGGTAGGGGAGGAAGTGGGGGCTCCGGAGATGAGGCCGAGAGT
TCGTAAATGGGGGCGCACCTGGACAAGCCCATCACCGAAAAAGAGAATTA
CGAGAGCGAGGCACATGGGTTAAAATTTGGTGCAGCGGCCATGCAGGGAT
GGAGAGTAGAGATGGAGGACGCACACACCATCGTCGAGACAATTGACCCC
GAGCTGGACGGACATTCCTTTATAGCAGTCTACGATGGCCATGGGGGTCA
ATACTCGGCAATTTACTGCGGGGAGCACATGGTCTCGTTTTTAAAGAAGA
CCAAGGGTTTTGAGGACTACAAGAAGACGAGAGACGTAACGCACCTGCGG
TCCGCCATTCACGCCGCTTTCCTCGACCTGGACGAGGTTCTGAAACGACA
AGACGAATTTGTGTCCAAGCAGGACACCAGCGGCTGCACCGCCATATGCG
CCATAATCACACCCACGCATGTAGTGGTCGGCAATGCCGGGGACTCCCGG
GGAGTGATCTTCTCATCCGATGGAGCCAAGCAGCTGTCAAGGGACCATAA
GCCCTACCTGGACGATGAACGGAAGAGGATCGAGGAGGCGGGAGGGATGG
TAAGCATGCAGAGGGTCGATGGTGATTTGGCCTTGTCCCGGTCCATCGGG
GATTTCCAATACAAAGACAGGCATCTCCCGCCTGAGCGTCAGAAAGTCAC
CGCCGTACCCGAAATTGAGATTCACACGCGGAACGCAGGCAAAGACGAAA
TGCTCCTCTTGGCCTGTGATGGTGTGTGGGACGTATGCGAGAATGAGGAA
GCAGGGCAGATTTTGAAGGAGGTATTGAACGACGGCGAAACGCGCATGGC
CTTGGTAGCAGAAGAGCTGCTTGACCAGTGTTTATTCAGGTATAGCAAGG
ACAATATTTCGGCGGTTGTGGTGGGGTTTGAGGGAATGGCACGGCATGCG
AAGGAGGGGGAGGGTGTGGAGGGGCGGCGAAGGAGGAGGCAGCAGCAAGA
GGAGGGGGGAGGTAGGGGAGGAAGTGGGGGCTCCGGAGATGAGGCCGAGA
GTTCGTAAATGGGGGCGCACCTGGACAAGCCCATCACCGAAAAAGAGAAT
TACGAGAGCGAGGCACATGGGTTAAAATTTGGTGCAGCGGCCATGCAGGG
ATGGAGAGTAGAGATGGAGGACGCACACACCATCGTCGAGACAATTGACC
CCGAGCTGGACGGACATTCCTTTATAGCAGTCTACGATGGCCATGGGGGT
CAATACTCGGCAATTTACTGCGGGGAGCACATGGTCTCGTTTTTAAAGAA
GACCAAGGGTTTTGAGGACTACAAGAAGACGAGAGACGTAACGCACCTGC
GGTCCGCCATTCACGCCGCTTTCCTCGACCTGGACGAGGTTCTGAAACGA
CAAGACGAATTTGTGTCCAAGCAGGACACCAGCGGCTGCACCGCCATATG
CGCCATAATCACACCCACGCATGTAGTGGTCGGCAATGCCGGGGACTCCC
GGGGAGTGATCTTCTCATCCGATGGAGCCAAGCAGCTGTCAAGGGACCAT
AAGCCCTACCTGGACGATGAACGGAAGAGGATCGAGGAGGCGGGAGGGAT
GGTAAGCATGCAGAGGGTCGATGGTGATTTGGCCTTGTCCCGGTCCATCG
GGGATTTCCAATACAAAGACAGGCATCTCCCGCCTGAGCGTCAGAAAGTC
ACCGCCGTACCCGAAATTGAGATTCACACGCGGAACGCAGGCAAAGACGA
AATGCTCCTCTTGGCCTGTGATGGTGTGTGGGACGTATGCGAGAATGAGG
AAGCAGGGCAGATTTTGAAGGAGGTATTGAACGACGGCGAAACGCGCATG
GCCTTGGTAGCAGAAGAGCTGCTTGACCAGTGTTTATTCAGGTATAGCAA
GGACAATATTTCGGCGGTTGTGGTGGGGTTTGAGGGAATGGCACGGCATG
CGAAGGAGGGGGAGGGTGTGGAGGGGCGGCGAAGGAGGAGGCAGCAGCAA
GAGGAGGGGGGAGGTAGGGGAGGAAGTGGGGGCTCCGGAGATGAGGCCGA
GAGTTCGTAA

Synonyms

Publications