jgi.p|Nanoce1779_2|336274, mRNA_2682 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|336274
Unique NamemRNA_2682
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length416
Alignment locationscaffold_5:923478..923893 -

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Properties
Property NameValue
TranscriptId336360
TrackFilteredModels2
ProteinId336274
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:923478..923893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|336274gene_2682Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|336274mRNA_2682-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2682CDS_2682Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2682 ID=mRNA_2682|Name=jgi.p|Nanoce1779_2|336274|organism=Nannochloropsis oceanica|type=mRNA|length=416bp
GCACAGCACTCATGAGAGCTGGTTCCTCGGGTGTGGGAAGAGGGGAAAAA
GGTGCTTGCATCCATCGTGTTTTCCGCGTCATGTGGAGTGTGCTTTCGCA
AAAGGCGATCGGCAGATCCAGCGCCGTAGTCTGATGGCAGAGCTGATGCT
CCTACTCGTAGCTGAGTGTGTCGCCATCGCTCTACCCATGCCTAGGCGTA
GCTATTGTGAACCCTGGCAGATAATCACTTCGACTAGAAGTTCGATCGCG
TTACTTGCCCGGTGGCCAATGTTATGCCCCAGAAGTCAGGCTTCGCACCC
TGCAATGCCCCATCGACAAGCAGACAGCTCTGTTGTAATCATTTGAAAGA
TTGTGGTTGTGGTTGTGTGGTTGAAGTGATTTTGGTCGACCATAGGAGTC
TGGGAAGGCCCGACGA
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protein sequence of jgi.p|Nanoce1779_2|336274

>mRNA_2682-protein ID=mRNA_2682-protein|Name=jgi.p|Nanoce1779_2|336274|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MAELMLLLVAECVAIALPMPRRSYCEPWQIITSTRSSIALLARWPMLCPR
SQASHPAMPHRQADSSVVII*
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mRNA from alignment at scaffold_5:923478..923893-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2682 ID=mRNA_2682|Name=jgi.p|Nanoce1779_2|336274|organism=Nannochloropsis oceanica|type=mRNA|length=416bp|location=Sequence derived from alignment at scaffold_5:923478..923893- (Nannochloropsis oceanica)
GCACAGCACTCATGAGAGCTGGTTCCTCGGGTGTGGGAAGAGGGGAAAAA
GGTGCTTGCATCCATCGTGTTTTCCGCGTCATGTGGAGTGTGCTTTCGCA
AAAGGCGATCGGCAGATCCAGCGCCGTAGTCTGATGGCAGAGCTGATGCT
CCTACTCGTAGCTGAGTGTGTCGCCATCGCTCTACCCATGCCTAGGCGTA
GCTATTGTGAACCCTGGCAGATAATCACTTCGACTAGAAGTTCGATCGCG
TTACTTGCCCGGTGGCCAATGTTATGCCCCAGAAGTCAGGCTTCGCACCC
TGCAATGCCCCATCGACAAGCAGACAGCTCTGTTGTAATCATTTGAAAGA
TTGTGGTTGTGGTTGTGTGGTTGAAGTGATTTTGGTCGACCATAGGAGTC
TGGGAAGGCCCGACGA
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Coding sequence (CDS) from alignment at scaffold_5:923478..923893-

>mRNA_2682 ID=mRNA_2682|Name=jgi.p|Nanoce1779_2|336274|organism=Nannochloropsis oceanica|type=CDS|length=213bp|location=Sequence derived from alignment at scaffold_5:923478..923893- (Nannochloropsis oceanica)
ATGGCAGAGCTGATGCTCCTACTCGTAGCTGAGTGTGTCGCCATCGCTCT
ACCCATGCCTAGGCGTAGCTATTGTGAACCCTGGCAGATAATCACTTCGA
CTAGAAGTTCGATCGCGTTACTTGCCCGGTGGCCAATGTTATGCCCCAGA
AGTCAGGCTTCGCACCCTGCAATGCCCCATCGACAAGCAGACAGCTCTGT
TGTAATCATTTGA
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Synonyms
Publications