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Properties
| Property Name | Value |
|---|
| TranscriptId | 576853 |
| Track | FilteredModels2 |
| ProteinId | 576767 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:667376..668947 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_268 ID=mRNA_268|Name=jgi.p|Nanoce1779_2|576767|organism=Nannochloropsis oceanica|type=mRNA|length=1572bp
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGACGCAAC
GGCACCCGCTGTCGATGGCTTCCAGGCCATCCCCCTCCGATCACCTTAGC
GCTGCCGGTCGCTCCACTAGCCGCGCTCAAGGTTTTACACACAATTCCCA
AATCCGCCCCGAGTCTCTTGGTCTTACTCGCGGTTTCCGTTTCCATGGCA
ATCCCCCAACCCTCGCTCTCGATCAAATCCTTCCGAATCCGGTTCAAGTA
ATTCCTAAGCTGCACGAGTTCCATCCCCACCTCGCAGGGCAGCGGCATAT
GGACCTCTTGATTGGCCCAGGCAATTTCTTCCACCACGCTTGATTGTCGA
TTTAGATTCGAGGTGTGTGAGAGAAAGAGCTGTGCGGAATGTTCCGGCAC
AAAGATAGCAAACACCACATATACGTAAAATTCCAAGAGTTGAAGTAAGG
TTGTGTATGTCTCAAGGGCCATGGTAGGGTAGAGATGCATGAGCTGCAGG
TACAGTCCGGCGTACCGAGCGACGCCATTGAGCGCTGATTGGGTCATGGT
CCATGCGTGCGTCGGGCGGGGAATGACGGGTGATGCAGGCCCTTTCTCGC
TAGAATGCTTGCTGCTATTGGGGCTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGCTGCAACTGCTGCTGCTGCTGCTGCTCGGAGGGGGTAGAACAGT
AAAGATGACCAAGCTCGGGTCTGCCGGGAGCTTGCTTGAAAAGGATAAGT
TCAGGAAGGGATTACCCATCGAGACAAATTTAGACAGGATAAAAAGCGGC
GAGATAGCGCCGTCCCTCTCCAGCACCCGCTCTTTCACCAAATGGCCCCA
GCTATTCACGGTAGGCCAAAAAAGAGGCTTCCCATGGTTGTTGAGCACAC
CTGCCATCCCCCCCAGGTCCTCCACTGAGATGGGTACGCTGAACCAAGTT
TCCCTTTCAAGCATCTGTTGCACGACCGCAAAACATTCTTGGTGGGTCTT
TTTGAGAACTAGCTCGCATTTGGTGTGCATTAAGTTTTTTAGAGCTGTTG
ATTTGTTGTGCCCAAACTCTTCTCCAAGGGCAACCAGTAGCTTTCCGATG
GCAAGCACTTGGATGAGATTTTCTAGGCATATTTCTTCTCTGTGAGTGAA
TTGGGCCGAGGACGGAAAAGGAGAGAAAAAGAGAGGGGGAGAGGTACGTA
AGAAGGGGTTGTGAACATCACGTCACAGCAGTTACGCCCTTTCCATATCA
TATTTTCTAATATCAGTCATGACTCACTCGGCCAAAAGCGCCACAACAGC
CCGTTCGATCGGCACCCAAAGCTGCTTCCGGACCTCCTTCAGGTCCCGCT
CTACGGCCGCGAGTCGGGCAAGCTCCAACTCCTCCTTTCTCTCCTTAAGC
ACACGCGCCATCTCGACCGCGTTCAGCTTTCTACCGTCTTGCACGACGGA
TGATATGAAGCTTTCGCCGTCGTCGTCCTCCTTTTTCTTCACCTCCTCTT
CCTCTTCCTCCTCGCCCCCGTCTTTACTCCCACTAGCCACGGCAGCGACC
TTCTTTAGCGATTGTCCCTCCC back to topprotein sequence of jgi.p|Nanoce1779_2|576767 >mRNA_268-protein ID=mRNA_268-protein|Name=jgi.p|Nanoce1779_2|576767|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MSCRYSPAYRATPLSADWVMVHACVGRGMTGDAGPFSLECLLLLGLLLLL
LLLLLLLQLLLLLLLGGGRTVKMTKLGSAGSLLEKDKFRKGLPIETNLDR
IKSGEIAPSLSSTRSFTKWPQLFTVGQKRGFPWLLSTPAIPPRSSTEMGT
LNQVSLSSICCTTAKHSWWVFLRTSSHLVCIKFFRAVDLLCPNSSPRATS
SFPMASTWMRFSRHISSL* back to topmRNA from alignment at scaffold_3:667376..668947+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_268 ID=mRNA_268|Name=jgi.p|Nanoce1779_2|576767|organism=Nannochloropsis oceanica|type=mRNA|length=1572bp|location=Sequence derived from alignment at scaffold_3:667376..668947+ (Nannochloropsis oceanica)
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGACGCAAC
GGCACCCGCTGTCGATGGCTTCCAGGCCATCCCCCTCCGATCACCTTAGC
GCTGCCGGTCGCTCCACTAGCCGCGCTCAAGGTTTTACACACAATTCCCA
AATCCGCCCCGAGTCTCTTGGTCTTACTCGCGGTTTCCGTTTCCATGGCA
ATCCCCCAACCCTCGCTCTCGATCAAATCCTTCCGAATCCGGTTCAAGTA
ATTCCTAAGCTGCACGAGTTCCATCCCCACCTCGCAGGGCAGCGGCATAT
GGACCTCTTGATTGGCCCAGGCAATTTCTTCCACCACGCTTGATTGTCGA
TTTAGATTCGAGGTGTGTGAGAGAAAGAGCTGTGCGGAATGTTCCGGCAC
AAAGATAGCAAACACCACATATACGTAAAATTCCAAGAGTTGAAGTAAGG
TTGTGTATGTCTCAAGGGCCATGGTAGGGTAGAGATGCATGAGCTGCAGG
TACAGTCCGGCGTACCGAGCGACGCCATTGAGCGCTGATTGGGTCATGGT
CCATGCGTGCGTCGGGCGGGGAATGACGGGTGATGCAGGCCCTTTCTCGC
TAGAATGCTTGCTGCTATTGGGGCTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGCTGCAACTGCTGCTGCTGCTGCTGCTCGGAGGGGGTAGAACAGT
AAAGATGACCAAGCTCGGGTCTGCCGGGAGCTTGCTTGAAAAGGATAAGT
TCAGGAAGGGATTACCCATCGAGACAAATTTAGACAGGATAAAAAGCGGC
GAGATAGCGCCGTCCCTCTCCAGCACCCGCTCTTTCACCAAATGGCCCCA
GCTATTCACGGTAGGCCAAAAAAGAGGCTTCCCATGGTTGTTGAGCACAC
CTGCCATCCCCCCCAGGTCCTCCACTGAGATGGGTACGCTGAACCAAGTT
TCCCTTTCAAGCATCTGTTGCACGACCGCAAAACATTCTTGGTGGGTCTT
TTTGAGAACTAGCTCGCATTTGGTGTGCATTAAGTTTTTTAGAGCTGTTG
ATTTGTTGTGCCCAAACTCTTCTCCAAGGGCAACCAGTAGCTTTCCGATG
GCAAGCACTTGGATGAGATTTTCTAGGCATATTTCTTCTCTGTGAGTGAA
TTGGGCCGAGGACGGAAAAGGAGAGAAAAAGAGAGGGGGAGAGGTACGTA
AGAAGGGGTTGTGAACATCACGTCACAGCAGTTACGCCCTTTCCATATCA
TATTTTCTAATATCAGTCATGACTCACTCGGCCAAAAGCGCCACAACAGC
CCGTTCGATCGGCACCCAAAGCTGCTTCCGGACCTCCTTCAGGTCCCGCT
CTACGGCCGCGAGTCGGGCAAGCTCCAACTCCTCCTTTCTCTCCTTAAGC
ACACGCGCCATCTCGACCGCGTTCAGCTTTCTACCGTCTTGCACGACGGA
TGATATGAAGCTTTCGCCGTCGTCGTCCTCCTTTTTCTTCACCTCCTCTT
CCTCTTCCTCCTCGCCCCCGTCTTTACTCCCACTAGCCACGGCAGCGACC
TTCTTTAGCGATTGTCCCTCCC back to topCoding sequence (CDS) from alignment at scaffold_3:667376..668947+ >mRNA_268 ID=mRNA_268|Name=jgi.p|Nanoce1779_2|576767|organism=Nannochloropsis oceanica|type=CDS|length=657bp|location=Sequence derived from alignment at scaffold_3:667376..668947+ (Nannochloropsis oceanica)
ATGAGCTGCAGGTACAGTCCGGCGTACCGAGCGACGCCATTGAGCGCTGA
TTGGGTCATGGTCCATGCGTGCGTCGGGCGGGGAATGACGGGTGATGCAG
GCCCTTTCTCGCTAGAATGCTTGCTGCTATTGGGGCTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGCTGCAACTGCTGCTGCTGCTGCTGCTCGGAGG
GGGTAGAACAGTAAAGATGACCAAGCTCGGGTCTGCCGGGAGCTTGCTTG
AAAAGGATAAGTTCAGGAAGGGATTACCCATCGAGACAAATTTAGACAGG
ATAAAAAGCGGCGAGATAGCGCCGTCCCTCTCCAGCACCCGCTCTTTCAC
CAAATGGCCCCAGCTATTCACGGTAGGCCAAAAAAGAGGCTTCCCATGGT
TGTTGAGCACACCTGCCATCCCCCCCAGGTCCTCCACTGAGATGGGTACG
CTGAACCAAGTTTCCCTTTCAAGCATCTGTTGCACGACCGCAAAACATTC
TTGGTGGGTCTTTTTGAGAACTAGCTCGCATTTGGTGTGCATTAAGTTTT
TTAGAGCTGTTGATTTGTTGTGCCCAAACTCTTCTCCAAGGGCAACCAGT
AGCTTTCCGATGGCAAGCACTTGGATGAGATTTTCTAGGCATATTTCTTC
TCTGTGA back to top
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