jgi.p|Nanoce1779_2|581154, mRNA_2679 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581154
Unique NamemRNA_2679
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length949
Alignment locationscaffold_5:916451..917838 -

Link to JBrowse

Properties
Property NameValue
TranscriptId581240
TrackFilteredModels2
ProteinId581154
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:916451..917838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581154gene_2679Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581154mRNA_2679-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2679CDS_2679Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2679 ID=mRNA_2679|Name=jgi.p|Nanoce1779_2|581154|organism=Nannochloropsis oceanica|type=mRNA|length=949bp
CAGGCAAGCTTAAACTTGCAAGCAGCTTAGGCGGGTGGAGAAAAGAGAGA
CCGCAGCAGGCGCAGTAGCAGCCAACCTACGAAACGGCCCGTGCTCCCAT
CATATAATCTCGTCAGGAAAACTGTGTCTCCCCAAGTTTCTCACCCTAAT
CTACTCCAAGGACGAGCTCATGTCCAATAAGGTGCTCCTCCTATATTCGA
GTCTGACATCGGATGCGGTGCAAGAGCAAGGCCAACGGCGGGCGCACGCC
CTCCTGACAGCCAAAGGCATCGAGTTTACAGAGATCGATGGAGCGGATCC
GAGGAATATAGAGAAACGGAACGAGCTGTTCCGATTGGGGCGGAAGGCGC
GATACCCTCAGATTTACATCGAGAGGAGTGATGGAAAGATAAATTACGTG
GGGGGATGGGAGGAGGTAGAGGCCATGAACGAGTGTTGTGACATGCCCAA
GGAGATTTTGAGGGCGAATCCGCATATTCAGACATTCGATCAGGTGTTTA
TCCATGTGAAGAGGACAAAGAGAAATAGCCTCGGCTTGCCGCCGGCGGCG
TCTTCGTATTCATAGATGGTCGTAGAAGGAGAGGGAGGATGTGAGAAGAG
GATCGGACTAAAAAGAGACAACGAGATTGTGTGGGAACAAAGCATGTGAT
GGACAAAGGCTAGCAGAAGAGGAAGAAATAGAGTGTACGATATAATTTGT
CACGTGCATTCCTGCGTGCGTGTCTGTCAGTGTATGTTTGCATGTCTGTA
TGCATAGATTGCCCCGTAGCAAGGGGAGGGACTGTGGGAGTGGGGGTACA
AACGAGTGTGCTCGAGCTGTACACTATGGACGGGGAGGCATGCGGAGATC
AGCCTCCGGACTGCCCATGCTGTCAGCTCGACAACGATCACAACCAGGAA
GACGGAAAGTACAAACGGAAGGAAGGAAGAGTACTGGTTCGACTCCATT
back to top

protein sequence of jgi.p|Nanoce1779_2|581154

>mRNA_2679-protein ID=mRNA_2679-protein|Name=jgi.p|Nanoce1779_2|581154|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MSNKVLLLYSSLTSDAVQEQGQRRAHALLTAKGIEFTEIDGADPRNIEKR
NELFRLGRKARYPQIYIERSDGKINYVGGWEEVEAMNECCDMPKEILRAN
PHIQTFDQVFIHVKRTKRNSLGLPPAASSYS*
back to top

mRNA from alignment at scaffold_5:916451..917838-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2679 ID=mRNA_2679|Name=jgi.p|Nanoce1779_2|581154|organism=Nannochloropsis oceanica|type=mRNA|length=1388bp|location=Sequence derived from alignment at scaffold_5:916451..917838- (Nannochloropsis oceanica)
CAGGCAAGCTTAAACTTGCAAGCAGCTTAGGCGGGTGGAGAAAAGAGAGA
CCGCAGCAGGCGCAGTAGCAGCCAACCTACGAAACGGCCCGTGCTCCCAT
CATATAATCTCGTCAGGAAAACTGTGTCTCCCCAAGTTTCTCACCCTAAT
CTACTCCAAGGACGAGCTCATGTCCAATAAGGTAAGGAGGAATAGCAAGA
GAACGAGAAACTGCAGGAGCAGCGGCAGCCGCAGCAGTTCGAGAAGGAGT
ATGAAGGGGTTGGGTGAGTGGAGTGGAGCAGGCCATTGTTTTAGGAAGCG
GGCTTTCCAAATCAACCGGGCTCCTCCGCATTGCAGCCCCTTCCTCCTGT
GGTGTCCGTTCCTTTTCCCCATCCTACCATTTCTGTGAATCTTGTCATAG
ATGTCGCTGTATTTTGCGCTTGATGTCCCCGAACCTTCCGTATGCCTTAC
CTCCCCCTTATGACCCCTCCTTCCCCCGCTCGACCACCTCCCCACCCCTC
CATCCCGCTGCATCACCACGAGATCACCGCAAGAAGCCCGTATTGATGTA
GTCAGAAGATCTAGTTGATCACCTTTTCCCTAGGTCCATCTCTCCCCTCC
CTTCCCCTCTCCCCCTGCAGGTGCTCCTCCTATATTCGAGTCTGACATCG
GATGCGGTGCAAGAGCAAGGCCAACGGCGGGCGCACGCCCTCCTGACAGC
CAAAGGCATCGAGTTTACAGAGATCGATGGAGCGGATCCGAGGAATATAG
AGAAACGGAACGAGCTGTTCCGATTGGGGCGGAAGGCGCGATACCCTCAG
ATTTACATCGAGAGGAGTGATGGAAAGATAAATTACGTGGGGGGATGGGA
GGAGGTAGAGGCCATGAACGAGTGTTGTGACATGCCCAAGGAGATTTTGA
GGGCGAATCCGCATATTCAGACATTCGATCAGGTGTTTATCCATGTGAAG
AGGACAAAGAGAAATAGCCTCGGCTTGCCGCCGGCGGCGTCTTCGTATTC
ATAGATGGTCGTAGAAGGAGAGGGAGGATGTGAGAAGAGGATCGGACTAA
AAAGAGACAACGAGATTGTGTGGGAACAAAGCATGTGATGGACAAAGGCT
AGCAGAAGAGGAAGAAATAGAGTGTACGATATAATTTGTCACGTGCATTC
CTGCGTGCGTGTCTGTCAGTGTATGTTTGCATGTCTGTATGCATAGATTG
CCCCGTAGCAAGGGGAGGGACTGTGGGAGTGGGGGTACAAACGAGTGTGC
TCGAGCTGTACACTATGGACGGGGAGGCATGCGGAGATCAGCCTCCGGAC
TGCCCATGCTGTCAGCTCGACAACGATCACAACCAGGAAGACGGAAAGTA
CAAACGGAAGGAAGGAAGAGTACTGGTTCGACTCCATT
back to top

Coding sequence (CDS) from alignment at scaffold_5:916451..917838-

>mRNA_2679 ID=mRNA_2679|Name=jgi.p|Nanoce1779_2|581154|organism=Nannochloropsis oceanica|type=CDS|length=792bp|location=Sequence derived from alignment at scaffold_5:916451..917838- (Nannochloropsis oceanica)
GTGCTCCTCCTATATTCGAGTCTGACATCGGATGCGGTGCAAGAGCAAGG
CCAACGGCGGGCGCACGCCCTCCTGACAGCCAAAGGCATCGAGTTTACAG
AGATCGATGGAGCGGATCCGAGGAATATAGAGAAACGGAACGAGCTGTTC
CGATTGGGGCGGAAGGCGCGATACCCTCAGATTTACATCGAGAGGAGTGA
TGGAAAGATAAATTACGTGGGGGGATGGGAGGAGGTAGAGGCCATGAACG
AGTGTTGTGACATGCCCAAGGAGATTTTGAGGGCGAATCCGCATATTCAG
ACATTCGATCAGGTGTTTATCCATGTGAAGAGGACAAAGAGAAATAGCCT
CGGCTTGCCGCCGGCGGCGTCTTCGTATTCATAGATGTCCAATAAGGTGC
TCCTCCTATATTCGAGTCTGACATCGGATGCGGTGCAAGAGCAAGGCCAA
CGGCGGGCGCACGCCCTCCTGACAGCCAAAGGCATCGAGTTTACAGAGAT
CGATGGAGCGGATCCGAGGAATATAGAGAAACGGAACGAGCTGTTCCGAT
TGGGGCGGAAGGCGCGATACCCTCAGATTTACATCGAGAGGAGTGATGGA
AAGATAAATTACGTGGGGGGATGGGAGGAGGTAGAGGCCATGAACGAGTG
TTGTGACATGCCCAAGGAGATTTTGAGGGCGAATCCGCATATTCAGACAT
TCGATCAGGTGTTTATCCATGTGAAGAGGACAAAGAGAAATAGCCTCGGC
TTGCCGCCGGCGGCGTCTTCGTATTCATAGATGTCCAATAAG
back to top
Synonyms
Publications