jgi.p|Nanoce1779_2|336103, mRNA_2678 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|336103
Unique Name	mRNA_2678
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2412
Alignment location	scaffold_5:913810..916221 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	336189
Track	FilteredModels2
ProteinId	336103

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:913810..916221 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|336103	gene_2678	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|336103	mRNA_2678-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2678	CDS_2678	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:913810..916221+
coding sequence from alignment at scaffold_5:913810..916221+

mRNA sequence

>mRNA_2678 ID=mRNA_2678|Name=jgi.p|Nanoce1779_2|336103|organism=Nannochloropsis oceanica|type=mRNA|length=2412bp
CGCTCGTCCTCGCTTGCAGCATCGGGAGCAAGGCACCAAGGAGAGCAGGA
GGCTAGGGAGGAGCAGCAACAGACGCAGCCGCAAGAGCAGCCCTCTACCA
CCGTCATGAATTTGTTTGACACCCAGACGTCGTCTCGCTCGTCCTCGCTT
GCAGCATCGGGAGCAAGGCACCAAGGAGAGCAGGAGGCTAGGGAGGAGCA
GCAACAGACGCAGCCGCAAGAGCAGCCCTCTACCACCGTCATGAATTTGT
TTGACACCCAGACGTCGTCTCGCTCGTCCTCGCTTGCAGCATCGGGAGCA
AGGCACCAAGGAGAGCAGGAGGCTAGGGAGGAGCAGCAACAGACGCAGCC
GCAAGAGCAGCCCTCTACCACCGTCATGAATTTGTTTGACACCCAGAAGT
CGTCTCGCTCGTCCTCGCTTGCAGCATCGGGAGCAAGGCACCAAGGAGAG
CAGGAGGCTAGGGAGGAGCAGCAACAGACGCAGCCGCAAGAGCAGCCCTC
TACCACCGTCATGAATTTGTTTGACACCCAGACGTCGTCTCGCTCGTCCT
CGCTTGCAGCATCGGGAGCAAGGCACCAAGGAGAGCAGGAGGCTAGGGAG
GAGCAGCAACAGACGCAGCCGCAAGAGCAGCCCTCTACCACCGTCATGAA
TTTGTTTGACACCCAGACGTCGTCTCGCTCGTCCTCGCTTGCAGCATCGG
GAGCAAGGCACCAAGGAGAGCAGGAGGCTAGGGAGGAGCAGCAACAGACG
CAGCCGCAAGAGCAGCCCTCTACCACCGTCATGAATTTGTTTGACACCCA
GACGTCGTCTCGCTCGTCCTCGCTTGCAGCATCGGGAGCAAGGCACCAAG
GAGAGCAGGAGGCTAGGGAGGAGCAACAACAGACGCAGCCGCAAGAGCAG
CCCTCTACCACCGTCATGAATTTGTTTGACACCCAGACGTCGTCTCGCTC
GTCCTCGCTTGCAGCATCGGGAGCAAGGCACCAAGGAGAGCAGGAGGCTA
GGGAGGAGCAACAACAGACGCAGCCGCAAGAGCAGCCCTCTACCACCGTC
ATGAATTTGTTTGACACCCAGACGTCGTCTCGCTCGTCCTCGCTTGCAGC
ATCGGAAGCAAGGCACCAAGGAGAGCAGGAGGCTAGGGAGGAGCAGCAAC
AGACGCAGCCGCAAGTGCAGCCGCAAGAGCAGCCCTCTACCACCGTCATG
AATTTGTTTGACATCCAAGCTCGTCCTGTCTCTTCCTCTCCTCCGTTTAC
TTACTCAACTCTTCGTCGTACAGCCAGCGGCGCAATCTCCCTCGTACCCT
TTCCCAAGTCTCCCACCTGCATCGCTGCTACCATCCCACGTCGTGCATGT
CACGAAGAAGAGATCAAGCAATACGGAGCCCCTCTCGTCCTCCCTGACGG
TGATGCCGACCTCCCCTCCCCCTTCGTGCCTATTTCTTTTGAAGCGACAC
CGGAGAATACGAACCGGATGGATTCTCTACAAGATGAAGGAGAGGAAGGT
GACGTCTTGGGAGACACGCGAGAGTCCGAGATGTCTGCACAAACTGTTCC
CCTTCCTCGTTCTCCCAACTTGTACCTCGCCTTCACCCGTCGGAGCTACA
GTGACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACTACAACGATAGCAACAA
CAAGAAGAACCGAAAGATTAAGACCAAGGGCAAGAGCAGCATAGCAAGCA
ACTTCCGCAAACTCTTCCGTCGGGGCGCCCACTCTTCCTTCTACCCTTCT
TCCTCACCCGACGGAACACCGCAGCAGCAGCAGCAGCAACAGCAACAAGC
ACCGAGTCCTCACTCCATTTATCGTTCACCTATAAACCCCAGAGGCAAGG
CTGAGAGCGGTACTGCTGTAGCTACTGCTGCAGGCACCACCTTCTCCTCC
ACAGTCTCATCTGTCTCTCATCCGGGATCTGCCTCCTCCCCTTCCTCCAC
TGTCGTCTCCACCCCCTCCTTGAAAACAATCAGCAATTCCACCACCACAT
CCCACCCTCGCTCCTCCTCTTTACTCTCCTCCTCCTCCATATCGTCCGCA
TCATCCGCAGCCTCTTTCTCCTCCTCTTTCCGCGCAGAAGGTGGTGGAGG
AAGAGGAAGAGGAGAAGGAGGGGTAAAACCTCTTGATTCTCCAGCTTCGG
CCCCTCCCCCCTCCCCGCAGCTTAAAGATCGCCTGGAACGGTTTAGCAGG
CTTATGTCCAGCACTGACGAATATGGAGGGGATATGTAAGCATTGACGCC
CGAGAGCTTGAGATGAGGGTCTCTTCCTCCTGATCTCGCCTTGTATTTTG
ACGGAAGAAAAGCCCGCTCAATAGATGTATGAATGTACATTCGAAAGACA
AAAAAGCATAGG

protein sequence of jgi.p|Nanoce1779_2|336103

>mRNA_2678-protein ID=mRNA_2678-protein|Name=jgi.p|Nanoce1779_2|336103|organism=Nannochloropsis oceanica|type=polypeptide|length=728bp
MNLFDTQTSSRSSSLAASGARHQGEQEAREEQQQTQPQEQPSTTVMNLFD
TQTSSRSSSLAASGARHQGEQEAREEQQQTQPQEQPSTTVMNLFDTQKSS
RSSSLAASGARHQGEQEAREEQQQTQPQEQPSTTVMNLFDTQTSSRSSSL
AASGARHQGEQEAREEQQQTQPQEQPSTTVMNLFDTQTSSRSSSLAASGA
RHQGEQEAREEQQQTQPQEQPSTTVMNLFDTQTSSRSSSLAASGARHQGE
QEAREEQQQTQPQEQPSTTVMNLFDTQTSSRSSSLAASGARHQGEQEARE
EQQQTQPQEQPSTTVMNLFDTQTSSRSSSLAASEARHQGEQEAREEQQQT
QPQVQPQEQPSTTVMNLFDIQARPVSSSPPFTYSTLRRTASGAISLVPFP
KSPTCIAATIPRRACHEEEIKQYGAPLVLPDGDADLPSPFVPISFEATPE
NTNRMDSLQDEGEEGDVLGDTRESEMSAQTVPLPRSPNLYLAFTRRSYSD
NNNNNNNNNNNNNNNNNNNNNNNNNNYNDSNNKKNRKIKTKGKSSIASNF
RKLFRRGAHSSFYPSSSPDGTPQQQQQQQQQAPSPHSIYRSPINPRGKAE
SGTAVATAAGTTFSSTVSSVSHPGSASSPSSTVVSTPSLKTISNSTTTSH
PRSSSLLSSSSISSASSAASFSSSFRAEGGGGRGRGEGGVKPLDSPASAP
PPSPQLKDRLERFSRLMSSTDEYGGDM*

mRNA from alignment at scaffold_5:913810..916221+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2678 ID=mRNA_2678|Name=jgi.p|Nanoce1779_2|336103|organism=Nannochloropsis oceanica|type=mRNA|length=2412bp|location=Sequence derived from alignment at scaffold_5:913810..916221+ (Nannochloropsis oceanica)
CGCTCGTCCTCGCTTGCAGCATCGGGAGCAAGGCACCAAGGAGAGCAGGA
GGCTAGGGAGGAGCAGCAACAGACGCAGCCGCAAGAGCAGCCCTCTACCA
CCGTCATGAATTTGTTTGACACCCAGACGTCGTCTCGCTCGTCCTCGCTT
GCAGCATCGGGAGCAAGGCACCAAGGAGAGCAGGAGGCTAGGGAGGAGCA
GCAACAGACGCAGCCGCAAGAGCAGCCCTCTACCACCGTCATGAATTTGT
TTGACACCCAGACGTCGTCTCGCTCGTCCTCGCTTGCAGCATCGGGAGCA
AGGCACCAAGGAGAGCAGGAGGCTAGGGAGGAGCAGCAACAGACGCAGCC
GCAAGAGCAGCCCTCTACCACCGTCATGAATTTGTTTGACACCCAGAAGT
CGTCTCGCTCGTCCTCGCTTGCAGCATCGGGAGCAAGGCACCAAGGAGAG
CAGGAGGCTAGGGAGGAGCAGCAACAGACGCAGCCGCAAGAGCAGCCCTC
TACCACCGTCATGAATTTGTTTGACACCCAGACGTCGTCTCGCTCGTCCT
CGCTTGCAGCATCGGGAGCAAGGCACCAAGGAGAGCAGGAGGCTAGGGAG
GAGCAGCAACAGACGCAGCCGCAAGAGCAGCCCTCTACCACCGTCATGAA
TTTGTTTGACACCCAGACGTCGTCTCGCTCGTCCTCGCTTGCAGCATCGG
GAGCAAGGCACCAAGGAGAGCAGGAGGCTAGGGAGGAGCAGCAACAGACG
CAGCCGCAAGAGCAGCCCTCTACCACCGTCATGAATTTGTTTGACACCCA
GACGTCGTCTCGCTCGTCCTCGCTTGCAGCATCGGGAGCAAGGCACCAAG
GAGAGCAGGAGGCTAGGGAGGAGCAACAACAGACGCAGCCGCAAGAGCAG
CCCTCTACCACCGTCATGAATTTGTTTGACACCCAGACGTCGTCTCGCTC
GTCCTCGCTTGCAGCATCGGGAGCAAGGCACCAAGGAGAGCAGGAGGCTA
GGGAGGAGCAACAACAGACGCAGCCGCAAGAGCAGCCCTCTACCACCGTC
ATGAATTTGTTTGACACCCAGACGTCGTCTCGCTCGTCCTCGCTTGCAGC
ATCGGAAGCAAGGCACCAAGGAGAGCAGGAGGCTAGGGAGGAGCAGCAAC
AGACGCAGCCGCAAGTGCAGCCGCAAGAGCAGCCCTCTACCACCGTCATG
AATTTGTTTGACATCCAAGCTCGTCCTGTCTCTTCCTCTCCTCCGTTTAC
TTACTCAACTCTTCGTCGTACAGCCAGCGGCGCAATCTCCCTCGTACCCT
TTCCCAAGTCTCCCACCTGCATCGCTGCTACCATCCCACGTCGTGCATGT
CACGAAGAAGAGATCAAGCAATACGGAGCCCCTCTCGTCCTCCCTGACGG
TGATGCCGACCTCCCCTCCCCCTTCGTGCCTATTTCTTTTGAAGCGACAC
CGGAGAATACGAACCGGATGGATTCTCTACAAGATGAAGGAGAGGAAGGT
GACGTCTTGGGAGACACGCGAGAGTCCGAGATGTCTGCACAAACTGTTCC
CCTTCCTCGTTCTCCCAACTTGTACCTCGCCTTCACCCGTCGGAGCTACA
GTGACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACTACAACGATAGCAACAA
CAAGAAGAACCGAAAGATTAAGACCAAGGGCAAGAGCAGCATAGCAAGCA
ACTTCCGCAAACTCTTCCGTCGGGGCGCCCACTCTTCCTTCTACCCTTCT
TCCTCACCCGACGGAACACCGCAGCAGCAGCAGCAGCAACAGCAACAAGC
ACCGAGTCCTCACTCCATTTATCGTTCACCTATAAACCCCAGAGGCAAGG
CTGAGAGCGGTACTGCTGTAGCTACTGCTGCAGGCACCACCTTCTCCTCC
ACAGTCTCATCTGTCTCTCATCCGGGATCTGCCTCCTCCCCTTCCTCCAC
TGTCGTCTCCACCCCCTCCTTGAAAACAATCAGCAATTCCACCACCACAT
CCCACCCTCGCTCCTCCTCTTTACTCTCCTCCTCCTCCATATCGTCCGCA
TCATCCGCAGCCTCTTTCTCCTCCTCTTTCCGCGCAGAAGGTGGTGGAGG
AAGAGGAAGAGGAGAAGGAGGGGTAAAACCTCTTGATTCTCCAGCTTCGG
CCCCTCCCCCCTCCCCGCAGCTTAAAGATCGCCTGGAACGGTTTAGCAGG
CTTATGTCCAGCACTGACGAATATGGAGGGGATATGTAAGCATTGACGCC
CGAGAGCTTGAGATGAGGGTCTCTTCCTCCTGATCTCGCCTTGTATTTTG
ACGGAAGAAAAGCCCGCTCAATAGATGTATGAATGTACATTCGAAAGACA
AAAAAGCATAGG

Coding sequence (CDS) from alignment at scaffold_5:913810..916221+

>mRNA_2678 ID=mRNA_2678|Name=jgi.p|Nanoce1779_2|336103|organism=Nannochloropsis oceanica|type=CDS|length=2184bp|location=Sequence derived from alignment at scaffold_5:913810..916221+ (Nannochloropsis oceanica)
ATGAATTTGTTTGACACCCAGACGTCGTCTCGCTCGTCCTCGCTTGCAGC
ATCGGGAGCAAGGCACCAAGGAGAGCAGGAGGCTAGGGAGGAGCAGCAAC
AGACGCAGCCGCAAGAGCAGCCCTCTACCACCGTCATGAATTTGTTTGAC
ACCCAGACGTCGTCTCGCTCGTCCTCGCTTGCAGCATCGGGAGCAAGGCA
CCAAGGAGAGCAGGAGGCTAGGGAGGAGCAGCAACAGACGCAGCCGCAAG
AGCAGCCCTCTACCACCGTCATGAATTTGTTTGACACCCAGAAGTCGTCT
CGCTCGTCCTCGCTTGCAGCATCGGGAGCAAGGCACCAAGGAGAGCAGGA
GGCTAGGGAGGAGCAGCAACAGACGCAGCCGCAAGAGCAGCCCTCTACCA
CCGTCATGAATTTGTTTGACACCCAGACGTCGTCTCGCTCGTCCTCGCTT
GCAGCATCGGGAGCAAGGCACCAAGGAGAGCAGGAGGCTAGGGAGGAGCA
GCAACAGACGCAGCCGCAAGAGCAGCCCTCTACCACCGTCATGAATTTGT
TTGACACCCAGACGTCGTCTCGCTCGTCCTCGCTTGCAGCATCGGGAGCA
AGGCACCAAGGAGAGCAGGAGGCTAGGGAGGAGCAGCAACAGACGCAGCC
GCAAGAGCAGCCCTCTACCACCGTCATGAATTTGTTTGACACCCAGACGT
CGTCTCGCTCGTCCTCGCTTGCAGCATCGGGAGCAAGGCACCAAGGAGAG
CAGGAGGCTAGGGAGGAGCAACAACAGACGCAGCCGCAAGAGCAGCCCTC
TACCACCGTCATGAATTTGTTTGACACCCAGACGTCGTCTCGCTCGTCCT
CGCTTGCAGCATCGGGAGCAAGGCACCAAGGAGAGCAGGAGGCTAGGGAG
GAGCAACAACAGACGCAGCCGCAAGAGCAGCCCTCTACCACCGTCATGAA
TTTGTTTGACACCCAGACGTCGTCTCGCTCGTCCTCGCTTGCAGCATCGG
AAGCAAGGCACCAAGGAGAGCAGGAGGCTAGGGAGGAGCAGCAACAGACG
CAGCCGCAAGTGCAGCCGCAAGAGCAGCCCTCTACCACCGTCATGAATTT
GTTTGACATCCAAGCTCGTCCTGTCTCTTCCTCTCCTCCGTTTACTTACT
CAACTCTTCGTCGTACAGCCAGCGGCGCAATCTCCCTCGTACCCTTTCCC
AAGTCTCCCACCTGCATCGCTGCTACCATCCCACGTCGTGCATGTCACGA
AGAAGAGATCAAGCAATACGGAGCCCCTCTCGTCCTCCCTGACGGTGATG
CCGACCTCCCCTCCCCCTTCGTGCCTATTTCTTTTGAAGCGACACCGGAG
AATACGAACCGGATGGATTCTCTACAAGATGAAGGAGAGGAAGGTGACGT
CTTGGGAGACACGCGAGAGTCCGAGATGTCTGCACAAACTGTTCCCCTTC
CTCGTTCTCCCAACTTGTACCTCGCCTTCACCCGTCGGAGCTACAGTGAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACTACAACGATAGCAACAACAAGA
AGAACCGAAAGATTAAGACCAAGGGCAAGAGCAGCATAGCAAGCAACTTC
CGCAAACTCTTCCGTCGGGGCGCCCACTCTTCCTTCTACCCTTCTTCCTC
ACCCGACGGAACACCGCAGCAGCAGCAGCAGCAACAGCAACAAGCACCGA
GTCCTCACTCCATTTATCGTTCACCTATAAACCCCAGAGGCAAGGCTGAG
AGCGGTACTGCTGTAGCTACTGCTGCAGGCACCACCTTCTCCTCCACAGT
CTCATCTGTCTCTCATCCGGGATCTGCCTCCTCCCCTTCCTCCACTGTCG
TCTCCACCCCCTCCTTGAAAACAATCAGCAATTCCACCACCACATCCCAC
CCTCGCTCCTCCTCTTTACTCTCCTCCTCCTCCATATCGTCCGCATCATC
CGCAGCCTCTTTCTCCTCCTCTTTCCGCGCAGAAGGTGGTGGAGGAAGAG
GAAGAGGAGAAGGAGGGGTAAAACCTCTTGATTCTCCAGCTTCGGCCCCT
CCCCCCTCCCCGCAGCTTAAAGATCGCCTGGAACGGTTTAGCAGGCTTAT
GTCCAGCACTGACGAATATGGAGGGGATATGTAA

Synonyms

Publications