jgi.p|Nanoce1779_2|581150, mRNA_2677 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581150
Unique Name	mRNA_2677
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1624
Alignment location	scaffold_5:909062..910685 -

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Properties


Property Name	Value
TranscriptId	581236
Track	FilteredModels2
ProteinId	581150

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:909062..910685 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581150	gene_2677	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581150	mRNA_2677-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2677	CDS_2677	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:909062..910685-
coding sequence from alignment at scaffold_5:909062..910685-

mRNA sequence

>mRNA_2677 ID=mRNA_2677|Name=jgi.p|Nanoce1779_2|581150|organism=Nannochloropsis oceanica|type=mRNA|length=1624bp
ACCGGCGCCGATCTTAAGCTTGTGGACTCTTGCATGCCTTCAATAGTGGA
AGAGGGAGAGGAGGTGGAGGAAGGGGGGGAGGAGGAATGGATAGTATCAA
AGAGCCCTCTGGTGATTGGCCGGGGGTCTGCTGATTGCAACGATCCGCTT
CCTTTCTTGGTGATGGACAAGGAGAAGGAAGGGTGGCGAGGGGTGTCGAA
TAGCCCAAGAACGGTAGAGAGCGGAAGAGGTGTTTCCTCAGTTGGTTTCA
GCGTTGCAGATGTCCGCTTATTTTGATCTGAAGTCGAGGCGGAGGAAGAG
GATGAGGAGGAAAAAGGTGGGGAAGCTTGGGTGTCAAAGAGCCCTTGTAC
AGTACGGGAAGGCTCGACTTCGTCTTTTCTGGGCGCGAAAGCTGCAAATG
CCCGCGAACTTTCCTGCAAGAAGGGGAAGGCGGAGGAAGAGGTGGAGGAA
GGGACAGAAGAGGAGGATAGGACGGTGTCAAAAAGCCCCTTGAAGGTCCG
GGATGGATGGGAATCCTCTTCCTCTTCTTGCATTTCTTTCTTTGGCACAT
GCCTGACATGCGTTGTCGTCTGGGTATGGGAAAGGGGAGGCTGTTGCGCT
GTTTGAAAGAACTCTGTGGATGTGAAGTCTGTCATTGTACGTGGGTTGGA
TTCGGGCGTGGCGGTAGTGGCTGCCAGAACGGAGGAGGAAGAGGGGGGGG
AGGAGGAGATGGTCGGAGTACAAGGAGGAGGCTGCTCAAGCTCGCTAGCT
GTAGCAGTGGCAAAAAACTGGCCTGGCCGTGGGCTCGTTTCCGACACTGC
AGTGGTAGATGCGAAAAGGGAGGAGAAGGAAAAGGTCACTTTGGGGGTGA
AAGGAGACTGGGTCGCAGTCTGGTAGAATCTTGTGGAGGTAAGATCCTCA
GGCGATGCAGTCCTTGTTATAGATAGAGCAGAGGAGGAGGAGGGAGAGAA
GGTAATAGTAAAAGTAGTGGAAGGGGGCTGGACATCAGTGTTGCCGGACT
GGGCAGTTGTATCGGTCAGATCCGCGCGGCGTTGTGCTTGCGTTTCTTGT
GAAGAGACGGAAGGAGAGGTGATAGAGGAGGAGGTGGGGGGGGGGGGAAG
AAAGGAAGACAGGCTCCATCGGGCGCTGTGTCTCTCGTAGGGAGACAGAA
GGACCGAAGGAAGATGCCGATGAGGTGGAGGAAGGCAGAAAGGTAACCGT
TTGACTTGGAAAAGGCGGGATCTGGGAGATACCCTTGACAGTATTGGAAT
ATGTCTGCGCTCGTGAGCTTCCCTCGTCCTCTTCCCGCATTGTCGAAGTG
GCCGTTGAAGAGGGGGAGGAAGACGCTATTGGGTTAGCAGGAGGGTGAAC
GGTGTCGAACAGCCCCATGATGGTTCGTGGCACTTGCCGGGGCAGCATGG
GCCCGGTAGTCGATGTAGCTGGTGTTGCCGGGCAAGGCGTATTGGAGGTA
GACTGTACTGTGTCGAACAGACCCATGATGGTCCGCGACACGTCCGCTGT
GGGCGCAGGCGTCGTAGTGGAGGATGTGGACGTCATCATCGGACTGGCTT
GAGGCTGAACGGTGTCAAATAGTCCCATGGCTGTCTGAGAGGCCTGTTGA
GGCTGGGCTGTGTCAAGCAAGCGC

protein sequence of jgi.p|Nanoce1779_2|581150

>mRNA_2677-protein ID=mRNA_2677-protein|Name=jgi.p|Nanoce1779_2|581150|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MGILFLFLHFFLWHMPDMRCRLGMGKGRLLRCLKELCGCEVCHCTWVGFG
RGGSGCQNGGGRGGGGGDGRSTRRRLLKLASCSSGKKLAWPWARFRHCSG
RCEKGGEGKGHFGGERRLGRSLVESCGGKILRRCSPCYR*

mRNA from alignment at scaffold_5:909062..910685-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2677 ID=mRNA_2677|Name=jgi.p|Nanoce1779_2|581150|organism=Nannochloropsis oceanica|type=mRNA|length=1624bp|location=Sequence derived from alignment at scaffold_5:909062..910685- (Nannochloropsis oceanica)
ACCGGCGCCGATCTTAAGCTTGTGGACTCTTGCATGCCTTCAATAGTGGA
AGAGGGAGAGGAGGTGGAGGAAGGGGGGGAGGAGGAATGGATAGTATCAA
AGAGCCCTCTGGTGATTGGCCGGGGGTCTGCTGATTGCAACGATCCGCTT
CCTTTCTTGGTGATGGACAAGGAGAAGGAAGGGTGGCGAGGGGTGTCGAA
TAGCCCAAGAACGGTAGAGAGCGGAAGAGGTGTTTCCTCAGTTGGTTTCA
GCGTTGCAGATGTCCGCTTATTTTGATCTGAAGTCGAGGCGGAGGAAGAG
GATGAGGAGGAAAAAGGTGGGGAAGCTTGGGTGTCAAAGAGCCCTTGTAC
AGTACGGGAAGGCTCGACTTCGTCTTTTCTGGGCGCGAAAGCTGCAAATG
CCCGCGAACTTTCCTGCAAGAAGGGGAAGGCGGAGGAAGAGGTGGAGGAA
GGGACAGAAGAGGAGGATAGGACGGTGTCAAAAAGCCCCTTGAAGGTCCG
GGATGGATGGGAATCCTCTTCCTCTTCTTGCATTTCTTTCTTTGGCACAT
GCCTGACATGCGTTGTCGTCTGGGTATGGGAAAGGGGAGGCTGTTGCGCT
GTTTGAAAGAACTCTGTGGATGTGAAGTCTGTCATTGTACGTGGGTTGGA
TTCGGGCGTGGCGGTAGTGGCTGCCAGAACGGAGGAGGAAGAGGGGGGGG
AGGAGGAGATGGTCGGAGTACAAGGAGGAGGCTGCTCAAGCTCGCTAGCT
GTAGCAGTGGCAAAAAACTGGCCTGGCCGTGGGCTCGTTTCCGACACTGC
AGTGGTAGATGCGAAAAGGGAGGAGAAGGAAAAGGTCACTTTGGGGGTGA
AAGGAGACTGGGTCGCAGTCTGGTAGAATCTTGTGGAGGTAAGATCCTCA
GGCGATGCAGTCCTTGTTATAGATAGAGCAGAGGAGGAGGAGGGAGAGAA
GGTAATAGTAAAAGTAGTGGAAGGGGGCTGGACATCAGTGTTGCCGGACT
GGGCAGTTGTATCGGTCAGATCCGCGCGGCGTTGTGCTTGCGTTTCTTGT
GAAGAGACGGAAGGAGAGGTGATAGAGGAGGAGGTGGGGGGGGGGGGAAG
AAAGGAAGACAGGCTCCATCGGGCGCTGTGTCTCTCGTAGGGAGACAGAA
GGACCGAAGGAAGATGCCGATGAGGTGGAGGAAGGCAGAAAGGTAACCGT
TTGACTTGGAAAAGGCGGGATCTGGGAGATACCCTTGACAGTATTGGAAT
ATGTCTGCGCTCGTGAGCTTCCCTCGTCCTCTTCCCGCATTGTCGAAGTG
GCCGTTGAAGAGGGGGAGGAAGACGCTATTGGGTTAGCAGGAGGGTGAAC
GGTGTCGAACAGCCCCATGATGGTTCGTGGCACTTGCCGGGGCAGCATGG
GCCCGGTAGTCGATGTAGCTGGTGTTGCCGGGCAAGGCGTATTGGAGGTA
GACTGTACTGTGTCGAACAGACCCATGATGGTCCGCGACACGTCCGCTGT
GGGCGCAGGCGTCGTAGTGGAGGATGTGGACGTCATCATCGGACTGGCTT
GAGGCTGAACGGTGTCAAATAGTCCCATGGCTGTCTGAGAGGCCTGTTGA
GGCTGGGCTGTGTCAAGCAAGCGC

Coding sequence (CDS) from alignment at scaffold_5:909062..910685-

>mRNA_2677 ID=mRNA_2677|Name=jgi.p|Nanoce1779_2|581150|organism=Nannochloropsis oceanica|type=CDS|length=420bp|location=Sequence derived from alignment at scaffold_5:909062..910685- (Nannochloropsis oceanica)
ATGGGAATCCTCTTCCTCTTCTTGCATTTCTTTCTTTGGCACATGCCTGA
CATGCGTTGTCGTCTGGGTATGGGAAAGGGGAGGCTGTTGCGCTGTTTGA
AAGAACTCTGTGGATGTGAAGTCTGTCATTGTACGTGGGTTGGATTCGGG
CGTGGCGGTAGTGGCTGCCAGAACGGAGGAGGAAGAGGGGGGGGAGGAGG
AGATGGTCGGAGTACAAGGAGGAGGCTGCTCAAGCTCGCTAGCTGTAGCA
GTGGCAAAAAACTGGCCTGGCCGTGGGCTCGTTTCCGACACTGCAGTGGT
AGATGCGAAAAGGGAGGAGAAGGAAAAGGTCACTTTGGGGGTGAAAGGAG
ACTGGGTCGCAGTCTGGTAGAATCTTGTGGAGGTAAGATCCTCAGGCGAT
GCAGTCCTTGTTATAGATAG

Synonyms

Publications