jgi.p|Nanoce1779_2|336092, mRNA_2676 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|336092
Unique Name	mRNA_2676
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2182
Alignment location	scaffold_5:907695..909876 +

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Properties


Property Name	Value
TranscriptId	336178
Track	FilteredModels2
ProteinId	336092

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:907695..909876 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|336092	gene_2676	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|336092	mRNA_2676-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2676	CDS_2676	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:907695..909876+
coding sequence from alignment at scaffold_5:907695..909876+

mRNA sequence

>mRNA_2676 ID=mRNA_2676|Name=jgi.p|Nanoce1779_2|336092|organism=Nannochloropsis oceanica|type=mRNA|length=2182bp
CTTCATCCCCCTCTTCTTCCTCTTCCTCCTCTCCTGATTCTCCGCGACCA
TCAAAACGTCTCTTTACCCGCCCCTCCAGACAATCACTTATGTTCCAACG
ACAACAACGCGAAGGCCAAGAACGCCTAGAAGCAGCAGTGCATGAAACAC
TTCCCACCATCTCCACCCTCTCTTCCTCCACCGCGCCCCCCCCCCCCTAC
CTCATATTATCAAACGGGGCCTTTCGGCCAATCAAGTCCCGCCGTCCCCG
TCCCCGCCACCGGTTGGCAGTACTCTCAGTCTCAAGTCGCCACCTCTCCT
AGCCAGCATCTTGCCCCTCCCACCCCTACCTTCTTTCCAGCTGCTGCCGC
CACGCTTGCCAAGTCCGTCCGGTTCAGTCAGCACAGGCACGAGAACGGCG
TCAAAGTCAAGGCGCCCCGCCCTGAAGGTGTCTCAGAAGAGGTATGGCGG
ATGCTGGACACAATGGAACTACCTGCCGGCAACGAACTCCAACATGCCTC
CACGGCTGTGATGCGCCTCTTTGACACCGTTCAGGATTCAGGAGCGACTG
TGCCAACACCACAGGGACCGTCGGTTGGTGTTTCCAAGAGCATTAGACAG
CCTTTTGAAACCGTCCAGCCTCCCTCCTCTTCTCCTCCTCCTCCTCCTTC
TCAAGATGCCACGTTTTTACCTGGCTCCGCTGTCCAGCCAACGGTTGCTT
CCTCGAATGCCGTGTCCTCCGGGCCGCCCGTCTCTCAAACTATCATGCGG
CTTTTCGATACAGTGCATCCTCCTCCTTCTTCCCCCGCTCCCTCGCCCTC
CTCTTCTGAACCACTCGGTGGCGCGCCACAACAGCCCGTACCCATGGACG
TCATGGGCCTGTTCGACACAAGAAGACAACCGCCCTCGTCATTCCTCGCA
TCCTCCCCGTCCTCCGCTCCAATATCTCGGCCATCCCCCGCCCCCAACAC
TCTTTCGGGACTCTTCGACACGATCCAACAATCCTCTTCCTCTTCCTCCT
TCAGTCCCTCTTCCTCCCTTTCGGCATCCAAGGCGTTCATAATGCCTGCC
ACAGTCCAACAAGGACCTATTCCGCATGTAACACCTTATGCCATGCATTT
ATTAGACACAGCTCAACCGCCCTCTACACAGTCCCTGTCTTTCCCATATT
TGGCCACGGAGCAGCACCACCGACAAGAGGCTGCATCTACGGCAGCCATG
CATTTGCTTGACACAGTGCAACCTGCCCCCACCCAGACAACGGATCTCTC
CTCTTCGTTGACGACCATATCTACTGATGCTATGCGCTTGCTTGACACAG
CCCAGCCGCCTAGTCAGACTGTCAACTCTTCATCATTCGCACATTGTCCT
GCGTCTACTTCTGCTATGCGCTTGCTTGACACAGCCCAGCCTCAACAGGC
CTCTCAGACAGCCATGGGACTATTTGACACCGTTCAGCCTCAAGCCAGTC
CGATGATGACGTCCACATCCTCCACTACGACGCCTGCGCCCACAGCGGAC
GTGTCGCGGACCATCATGGGTCTGTTCGACACAGTACAGTCTACCTCCAA
TACGCCTTGCCCGGCAACACCAGCTACATCGACTACCGGGCCCATGCTGC
CCCGGCAAGTGCCACGAACCATCATGGGGCTGTTCGACACCGTTCACCCT
CCTGCTAACCCAATAGCGTCTTCCTCCCCCTCTTCAACGGCCACTTCGAC
AATGCGGGAAGAGGACGAGGGAAGCTCACGAGCGCAGACATATTCCAATA
CTGTCAAGGGTATCTCCCAGATCCCGCCTTTTCCAAGTCAAACGGTTACC
TTTCTGCCTTCCTCCACCTCATCGGCATCTTCCTTCGGTCCTTCTGTCTC
CCTACGAGAGACACAGCGCCCGATGGAGCCTGTCTTCCTTTCTTCCCCCC
CCCCCCACCTCCTCCTCTATCACCTCTCCTTCCGTCTCTTCACAAGAAAC
GCAAGCACAACGCCGCGCGGATCTGACCGATACAACTGCCCAGTCCGGCA
ACACTGATGTCCAGCCCCCTTCCACTACTTTTACTATTACCTTCTCTCCC
TCCTCCTCCTCTGCTCTATCTATAACAAGGACTGCATCGCCTGAGGATCT
TACCTCCACAAGATTCTACCAGACTGCGACCCAGTCTCCTTTCACCCCCA
AAGTGACCTTTTCCTTCTCCTCCCTTTTCGCA

protein sequence of jgi.p|Nanoce1779_2|336092

>mRNA_2676-protein ID=mRNA_2676-protein|Name=jgi.p|Nanoce1779_2|336092|organism=Nannochloropsis oceanica|type=polypeptide|length=622bp
MKHFPPSPPSLPPPRPPPPTSYYQTGPFGQSSPAVPVPATGWQYSQSQVA
TSPSQHLAPPTPTFFPAAAATLAKSVRFSQHRHENGVKVKAPRPEGVSEE
VWRMLDTMELPAGNELQHASTAVMRLFDTVQDSGATVPTPQGPSVGVSKS
IRQPFETVQPPSSSPPPPPSQDATFLPGSAVQPTVASSNAVSSGPPVSQT
IMRLFDTVHPPPSSPAPSPSSSEPLGGAPQQPVPMDVMGLFDTRRQPPSS
FLASSPSSAPISRPSPAPNTLSGLFDTIQQSSSSSSFSPSSSLSASKAFI
MPATVQQGPIPHVTPYAMHLLDTAQPPSTQSLSFPYLATEQHHRQEAAST
AAMHLLDTVQPAPTQTTDLSSSLTTISTDAMRLLDTAQPPSQTVNSSSFA
HCPASTSAMRLLDTAQPQQASQTAMGLFDTVQPQASPMMTSTSSTTTPAP
TADVSRTIMGLFDTVQSTSNTPCPATPATSTTGPMLPRQVPRTIMGLFDT
VHPPANPIASSSPSSTATSTMREEDEGSSRAQTYSNTVKGISQIPPFPSQ
TVTFLPSSTSSASSFGPSVSLRETQRPMEPVFLSSPPPHLLLYHLSFRLF
TRNASTTPRGSDRYNCPVRQH*

mRNA from alignment at scaffold_5:907695..909876+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2676 ID=mRNA_2676|Name=jgi.p|Nanoce1779_2|336092|organism=Nannochloropsis oceanica|type=mRNA|length=2182bp|location=Sequence derived from alignment at scaffold_5:907695..909876+ (Nannochloropsis oceanica)
CTTCATCCCCCTCTTCTTCCTCTTCCTCCTCTCCTGATTCTCCGCGACCA
TCAAAACGTCTCTTTACCCGCCCCTCCAGACAATCACTTATGTTCCAACG
ACAACAACGCGAAGGCCAAGAACGCCTAGAAGCAGCAGTGCATGAAACAC
TTCCCACCATCTCCACCCTCTCTTCCTCCACCGCGCCCCCCCCCCCCTAC
CTCATATTATCAAACGGGGCCTTTCGGCCAATCAAGTCCCGCCGTCCCCG
TCCCCGCCACCGGTTGGCAGTACTCTCAGTCTCAAGTCGCCACCTCTCCT
AGCCAGCATCTTGCCCCTCCCACCCCTACCTTCTTTCCAGCTGCTGCCGC
CACGCTTGCCAAGTCCGTCCGGTTCAGTCAGCACAGGCACGAGAACGGCG
TCAAAGTCAAGGCGCCCCGCCCTGAAGGTGTCTCAGAAGAGGTATGGCGG
ATGCTGGACACAATGGAACTACCTGCCGGCAACGAACTCCAACATGCCTC
CACGGCTGTGATGCGCCTCTTTGACACCGTTCAGGATTCAGGAGCGACTG
TGCCAACACCACAGGGACCGTCGGTTGGTGTTTCCAAGAGCATTAGACAG
CCTTTTGAAACCGTCCAGCCTCCCTCCTCTTCTCCTCCTCCTCCTCCTTC
TCAAGATGCCACGTTTTTACCTGGCTCCGCTGTCCAGCCAACGGTTGCTT
CCTCGAATGCCGTGTCCTCCGGGCCGCCCGTCTCTCAAACTATCATGCGG
CTTTTCGATACAGTGCATCCTCCTCCTTCTTCCCCCGCTCCCTCGCCCTC
CTCTTCTGAACCACTCGGTGGCGCGCCACAACAGCCCGTACCCATGGACG
TCATGGGCCTGTTCGACACAAGAAGACAACCGCCCTCGTCATTCCTCGCA
TCCTCCCCGTCCTCCGCTCCAATATCTCGGCCATCCCCCGCCCCCAACAC
TCTTTCGGGACTCTTCGACACGATCCAACAATCCTCTTCCTCTTCCTCCT
TCAGTCCCTCTTCCTCCCTTTCGGCATCCAAGGCGTTCATAATGCCTGCC
ACAGTCCAACAAGGACCTATTCCGCATGTAACACCTTATGCCATGCATTT
ATTAGACACAGCTCAACCGCCCTCTACACAGTCCCTGTCTTTCCCATATT
TGGCCACGGAGCAGCACCACCGACAAGAGGCTGCATCTACGGCAGCCATG
CATTTGCTTGACACAGTGCAACCTGCCCCCACCCAGACAACGGATCTCTC
CTCTTCGTTGACGACCATATCTACTGATGCTATGCGCTTGCTTGACACAG
CCCAGCCGCCTAGTCAGACTGTCAACTCTTCATCATTCGCACATTGTCCT
GCGTCTACTTCTGCTATGCGCTTGCTTGACACAGCCCAGCCTCAACAGGC
CTCTCAGACAGCCATGGGACTATTTGACACCGTTCAGCCTCAAGCCAGTC
CGATGATGACGTCCACATCCTCCACTACGACGCCTGCGCCCACAGCGGAC
GTGTCGCGGACCATCATGGGTCTGTTCGACACAGTACAGTCTACCTCCAA
TACGCCTTGCCCGGCAACACCAGCTACATCGACTACCGGGCCCATGCTGC
CCCGGCAAGTGCCACGAACCATCATGGGGCTGTTCGACACCGTTCACCCT
CCTGCTAACCCAATAGCGTCTTCCTCCCCCTCTTCAACGGCCACTTCGAC
AATGCGGGAAGAGGACGAGGGAAGCTCACGAGCGCAGACATATTCCAATA
CTGTCAAGGGTATCTCCCAGATCCCGCCTTTTCCAAGTCAAACGGTTACC
TTTCTGCCTTCCTCCACCTCATCGGCATCTTCCTTCGGTCCTTCTGTCTC
CCTACGAGAGACACAGCGCCCGATGGAGCCTGTCTTCCTTTCTTCCCCCC
CCCCCCACCTCCTCCTCTATCACCTCTCCTTCCGTCTCTTCACAAGAAAC
GCAAGCACAACGCCGCGCGGATCTGACCGATACAACTGCCCAGTCCGGCA
ACACTGATGTCCAGCCCCCTTCCACTACTTTTACTATTACCTTCTCTCCC
TCCTCCTCCTCTGCTCTATCTATAACAAGGACTGCATCGCCTGAGGATCT
TACCTCCACAAGATTCTACCAGACTGCGACCCAGTCTCCTTTCACCCCCA
AAGTGACCTTTTCCTTCTCCTCCCTTTTCGCA

Coding sequence (CDS) from alignment at scaffold_5:907695..909876+

>mRNA_2676 ID=mRNA_2676|Name=jgi.p|Nanoce1779_2|336092|organism=Nannochloropsis oceanica|type=CDS|length=1866bp|location=Sequence derived from alignment at scaffold_5:907695..909876+ (Nannochloropsis oceanica)
ATGAAACACTTCCCACCATCTCCACCCTCTCTTCCTCCACCGCGCCCCCC
CCCCCCTACCTCATATTATCAAACGGGGCCTTTCGGCCAATCAAGTCCCG
CCGTCCCCGTCCCCGCCACCGGTTGGCAGTACTCTCAGTCTCAAGTCGCC
ACCTCTCCTAGCCAGCATCTTGCCCCTCCCACCCCTACCTTCTTTCCAGC
TGCTGCCGCCACGCTTGCCAAGTCCGTCCGGTTCAGTCAGCACAGGCACG
AGAACGGCGTCAAAGTCAAGGCGCCCCGCCCTGAAGGTGTCTCAGAAGAG
GTATGGCGGATGCTGGACACAATGGAACTACCTGCCGGCAACGAACTCCA
ACATGCCTCCACGGCTGTGATGCGCCTCTTTGACACCGTTCAGGATTCAG
GAGCGACTGTGCCAACACCACAGGGACCGTCGGTTGGTGTTTCCAAGAGC
ATTAGACAGCCTTTTGAAACCGTCCAGCCTCCCTCCTCTTCTCCTCCTCC
TCCTCCTTCTCAAGATGCCACGTTTTTACCTGGCTCCGCTGTCCAGCCAA
CGGTTGCTTCCTCGAATGCCGTGTCCTCCGGGCCGCCCGTCTCTCAAACT
ATCATGCGGCTTTTCGATACAGTGCATCCTCCTCCTTCTTCCCCCGCTCC
CTCGCCCTCCTCTTCTGAACCACTCGGTGGCGCGCCACAACAGCCCGTAC
CCATGGACGTCATGGGCCTGTTCGACACAAGAAGACAACCGCCCTCGTCA
TTCCTCGCATCCTCCCCGTCCTCCGCTCCAATATCTCGGCCATCCCCCGC
CCCCAACACTCTTTCGGGACTCTTCGACACGATCCAACAATCCTCTTCCT
CTTCCTCCTTCAGTCCCTCTTCCTCCCTTTCGGCATCCAAGGCGTTCATA
ATGCCTGCCACAGTCCAACAAGGACCTATTCCGCATGTAACACCTTATGC
CATGCATTTATTAGACACAGCTCAACCGCCCTCTACACAGTCCCTGTCTT
TCCCATATTTGGCCACGGAGCAGCACCACCGACAAGAGGCTGCATCTACG
GCAGCCATGCATTTGCTTGACACAGTGCAACCTGCCCCCACCCAGACAAC
GGATCTCTCCTCTTCGTTGACGACCATATCTACTGATGCTATGCGCTTGC
TTGACACAGCCCAGCCGCCTAGTCAGACTGTCAACTCTTCATCATTCGCA
CATTGTCCTGCGTCTACTTCTGCTATGCGCTTGCTTGACACAGCCCAGCC
TCAACAGGCCTCTCAGACAGCCATGGGACTATTTGACACCGTTCAGCCTC
AAGCCAGTCCGATGATGACGTCCACATCCTCCACTACGACGCCTGCGCCC
ACAGCGGACGTGTCGCGGACCATCATGGGTCTGTTCGACACAGTACAGTC
TACCTCCAATACGCCTTGCCCGGCAACACCAGCTACATCGACTACCGGGC
CCATGCTGCCCCGGCAAGTGCCACGAACCATCATGGGGCTGTTCGACACC
GTTCACCCTCCTGCTAACCCAATAGCGTCTTCCTCCCCCTCTTCAACGGC
CACTTCGACAATGCGGGAAGAGGACGAGGGAAGCTCACGAGCGCAGACAT
ATTCCAATACTGTCAAGGGTATCTCCCAGATCCCGCCTTTTCCAAGTCAA
ACGGTTACCTTTCTGCCTTCCTCCACCTCATCGGCATCTTCCTTCGGTCC
TTCTGTCTCCCTACGAGAGACACAGCGCCCGATGGAGCCTGTCTTCCTTT
CTTCCCCCCCCCCCCACCTCCTCCTCTATCACCTCTCCTTCCGTCTCTTC
ACAAGAAACGCAAGCACAACGCCGCGCGGATCTGACCGATACAACTGCCC
AGTCCGGCAACACTGA

Synonyms

Publications