jgi.p|Nanoce1779_2|581147, mRNA_2675 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581147
Unique NamemRNA_2675
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1674
Alignment locationscaffold_5:905530..907203 -

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Properties
Property NameValue
TranscriptId581233
TrackFilteredModels2
ProteinId581147
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:905530..907203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581147gene_2675Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581147mRNA_2675-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2675CDS_2675Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2675 ID=mRNA_2675|Name=jgi.p|Nanoce1779_2|581147|organism=Nannochloropsis oceanica|type=mRNA|length=1674bp
CAGGAATCGTGGGGCAAAAATTGCTCCTGAACTGCCTCTGCAGGTGGTGT
TACCTGCTGCTGCTGCTGCTCCCCTCCTCCTCCTCCTCCTCCCACTTTCG
TTGCGGGGGCCGGCTGTTGTACTGGCTGCTGCTACGCGGGAGTGGAACGG
AATACCCAGCGCCGAAAGAGGGGGAGGGAGGAAGGGAATGATTGGCTGCT
TTTGAGCCTAGTGCCCTGTCCGGTGAAAGGAGCTGCTGCGATTCCGATGG
CTGGATCAACCCCATGCTGCTGCTATTGCTGCTGTTGCTGTTTGCAGGCT
TGGATAAATCTAATTTATTGGAGGATTGTGTGGCGGACAGCTCTTCCTCC
ACCCTATCTGCCGCGTCAGTGAAGATAGAGCCGGAGGGGGTGGTATTATT
CTCGTCGCCGTCTCTTGTTGAGGAGTCTTTCAAGGGCACGGCCGTCGGGG
AGGTACCCTGTGCCTCCTCGCCTTCTTCCGCACACCCAGACTCGTACATC
GACGTTTGGCCAGCAAAGGCAGTGAACGTGGGTTTGGCCGAGTCGAGAGG
CCGAGGAGCAAGAGAGGCGCGGGTGCCGCTCGGTGGGGCTAGGACTGTGT
CTTCCTCCCATCCCTCCTCCTGATCCTGCGGTCGCGAGAAAATGGATGGC
AATGTATCATCTCCATCGTCGAAGGAGTCCCGTGGCAAGAATGCCTGCGC
TGCCTCCTCCCTCTCTCCATCACGCGCGGTCTCCCTCCAGGCCTCATCCC
CTCCCATCCCTGAGGAGATCGCCTCTTCACCATATTGCCCCTCATCCCCA
TCCTCCTGGTGCTGATAGTACTGTTGCGTCTGCTCCTGGTTATAGTACTG
TTCTTCCTGCTGCTGCTGCTGCTTCTGTTCTTGTAGGTTCTGGTAGTACG
CTTCCTCCTCTTCTTCTTCGGACTCGATTTGGGTTGACTGCTGTTGCTGT
CGTCTTGACCATGACCGATTGCCTTTCACATTCCGCGACGCCCTGGACCG
CCAGCCTCCGCGACCAGAAGGTAAATTCTGCCCCTCCTGCTCTTGCCCTT
CTCCCTCTTCCTCCTCATATTCGTCTTCATAAAATTCGTCCTCCTCGTCT
TGGTCTACGTCTTCTTCTTCTTCTTCTTCTTCGTCGTCGTACTCCTCCTC
TTGGCGGTTTCGCCTCACTCTGGACGACTTCGGCGGGGAACGCGGCGGCG
TCCGAGGCGGGGAGTCAGAACGGTCATAGGATGGTGGAGGACCTGGTGGC
GGTGGCAACGCGCGCTTTCTCCTCCTACACCCTTCATCCTGCTGCTCATA
CAGCTGGGGACTTGGCGAAATGCTCCCACTCTGTCCCACAGGCGAGCTTC
GGTCGCGGCTGCAGGGTGACAGGCTCCGCCCTCGAGGGGAGGAGAGACTC
CTCCGAGCACCCCCTCGCCCTTCTACTCCTCTATGCCTGTACCGATCATC
CACTGAGTGCGAGCGTCGGTCGCGTTGGTCACGTTGTTCGTCATAGTAGT
GGAGGTCCTCCCGGCGTGCGCTGACCGTTGGCCTTTCCAAGGACACCTGC
AGCTTGGTCACCACCAACGAACCGGAGGGAGGGGAGAGAGATGCCCGCCC
CTCGATGGTGTCGCGGACCTTGCGTAGGGCGGAGGTCGTGACGGCTTGTT
CCTCGCTTTGCGGCTGGTGGCGGT
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protein sequence of jgi.p|Nanoce1779_2|581147

>mRNA_2675-protein ID=mRNA_2675-protein|Name=jgi.p|Nanoce1779_2|581147|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MAMYHLHRRRSPVARMPALPPPSLHHARSPSRPHPLPSLRRSPLHHIAPH
PHPPGADSTVASAPGYSTVLPAAAAASVLVGSGSTLPPLLLRTRFGLTAV
AVVLTMTDCLSHSATPWTASLRDQKVNSAPPALALLPLPPHIRLHKIRPP
RLGLRLLLLLLLRRRTPPLGGFASLWTTSAGNAAASEAGSQNGHRMVEDL
VAVATRAFSSYTLHPAAHTAGDLAKCSHSVPQASFGRGCRVTGSALEGRR
DSSEHPLALLLLYACTDHPLSASVGRVGHVVRHSSGGPPGVR*
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mRNA from alignment at scaffold_5:905530..907203-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2675 ID=mRNA_2675|Name=jgi.p|Nanoce1779_2|581147|organism=Nannochloropsis oceanica|type=mRNA|length=1674bp|location=Sequence derived from alignment at scaffold_5:905530..907203- (Nannochloropsis oceanica)
CAGGAATCGTGGGGCAAAAATTGCTCCTGAACTGCCTCTGCAGGTGGTGT
TACCTGCTGCTGCTGCTGCTCCCCTCCTCCTCCTCCTCCTCCCACTTTCG
TTGCGGGGGCCGGCTGTTGTACTGGCTGCTGCTACGCGGGAGTGGAACGG
AATACCCAGCGCCGAAAGAGGGGGAGGGAGGAAGGGAATGATTGGCTGCT
TTTGAGCCTAGTGCCCTGTCCGGTGAAAGGAGCTGCTGCGATTCCGATGG
CTGGATCAACCCCATGCTGCTGCTATTGCTGCTGTTGCTGTTTGCAGGCT
TGGATAAATCTAATTTATTGGAGGATTGTGTGGCGGACAGCTCTTCCTCC
ACCCTATCTGCCGCGTCAGTGAAGATAGAGCCGGAGGGGGTGGTATTATT
CTCGTCGCCGTCTCTTGTTGAGGAGTCTTTCAAGGGCACGGCCGTCGGGG
AGGTACCCTGTGCCTCCTCGCCTTCTTCCGCACACCCAGACTCGTACATC
GACGTTTGGCCAGCAAAGGCAGTGAACGTGGGTTTGGCCGAGTCGAGAGG
CCGAGGAGCAAGAGAGGCGCGGGTGCCGCTCGGTGGGGCTAGGACTGTGT
CTTCCTCCCATCCCTCCTCCTGATCCTGCGGTCGCGAGAAAATGGATGGC
AATGTATCATCTCCATCGTCGAAGGAGTCCCGTGGCAAGAATGCCTGCGC
TGCCTCCTCCCTCTCTCCATCACGCGCGGTCTCCCTCCAGGCCTCATCCC
CTCCCATCCCTGAGGAGATCGCCTCTTCACCATATTGCCCCTCATCCCCA
TCCTCCTGGTGCTGATAGTACTGTTGCGTCTGCTCCTGGTTATAGTACTG
TTCTTCCTGCTGCTGCTGCTGCTTCTGTTCTTGTAGGTTCTGGTAGTACG
CTTCCTCCTCTTCTTCTTCGGACTCGATTTGGGTTGACTGCTGTTGCTGT
CGTCTTGACCATGACCGATTGCCTTTCACATTCCGCGACGCCCTGGACCG
CCAGCCTCCGCGACCAGAAGGTAAATTCTGCCCCTCCTGCTCTTGCCCTT
CTCCCTCTTCCTCCTCATATTCGTCTTCATAAAATTCGTCCTCCTCGTCT
TGGTCTACGTCTTCTTCTTCTTCTTCTTCTTCGTCGTCGTACTCCTCCTC
TTGGCGGTTTCGCCTCACTCTGGACGACTTCGGCGGGGAACGCGGCGGCG
TCCGAGGCGGGGAGTCAGAACGGTCATAGGATGGTGGAGGACCTGGTGGC
GGTGGCAACGCGCGCTTTCTCCTCCTACACCCTTCATCCTGCTGCTCATA
CAGCTGGGGACTTGGCGAAATGCTCCCACTCTGTCCCACAGGCGAGCTTC
GGTCGCGGCTGCAGGGTGACAGGCTCCGCCCTCGAGGGGAGGAGAGACTC
CTCCGAGCACCCCCTCGCCCTTCTACTCCTCTATGCCTGTACCGATCATC
CACTGAGTGCGAGCGTCGGTCGCGTTGGTCACGTTGTTCGTCATAGTAGT
GGAGGTCCTCCCGGCGTGCGCTGACCGTTGGCCTTTCCAAGGACACCTGC
AGCTTGGTCACCACCAACGAACCGGAGGGAGGGGAGAGAGATGCCCGCCC
CTCGATGGTGTCGCGGACCTTGCGTAGGGCGGAGGTCGTGACGGCTTGTT
CCTCGCTTTGCGGCTGGTGGCGGT
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Coding sequence (CDS) from alignment at scaffold_5:905530..907203-

>mRNA_2675 ID=mRNA_2675|Name=jgi.p|Nanoce1779_2|581147|organism=Nannochloropsis oceanica|type=CDS|length=879bp|location=Sequence derived from alignment at scaffold_5:905530..907203- (Nannochloropsis oceanica)
ATGGCAATGTATCATCTCCATCGTCGAAGGAGTCCCGTGGCAAGAATGCC
TGCGCTGCCTCCTCCCTCTCTCCATCACGCGCGGTCTCCCTCCAGGCCTC
ATCCCCTCCCATCCCTGAGGAGATCGCCTCTTCACCATATTGCCCCTCAT
CCCCATCCTCCTGGTGCTGATAGTACTGTTGCGTCTGCTCCTGGTTATAG
TACTGTTCTTCCTGCTGCTGCTGCTGCTTCTGTTCTTGTAGGTTCTGGTA
GTACGCTTCCTCCTCTTCTTCTTCGGACTCGATTTGGGTTGACTGCTGTT
GCTGTCGTCTTGACCATGACCGATTGCCTTTCACATTCCGCGACGCCCTG
GACCGCCAGCCTCCGCGACCAGAAGGTAAATTCTGCCCCTCCTGCTCTTG
CCCTTCTCCCTCTTCCTCCTCATATTCGTCTTCATAAAATTCGTCCTCCT
CGTCTTGGTCTACGTCTTCTTCTTCTTCTTCTTCTTCGTCGTCGTACTCC
TCCTCTTGGCGGTTTCGCCTCACTCTGGACGACTTCGGCGGGGAACGCGG
CGGCGTCCGAGGCGGGGAGTCAGAACGGTCATAGGATGGTGGAGGACCTG
GTGGCGGTGGCAACGCGCGCTTTCTCCTCCTACACCCTTCATCCTGCTGC
TCATACAGCTGGGGACTTGGCGAAATGCTCCCACTCTGTCCCACAGGCGA
GCTTCGGTCGCGGCTGCAGGGTGACAGGCTCCGCCCTCGAGGGGAGGAGA
GACTCCTCCGAGCACCCCCTCGCCCTTCTACTCCTCTATGCCTGTACCGA
TCATCCACTGAGTGCGAGCGTCGGTCGCGTTGGTCACGTTGTTCGTCATA
GTAGTGGAGGTCCTCCCGGCGTGCGCTGA
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Synonyms
Publications