jgi.p|Nanoce1779_2|336073, mRNA_2673 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|336073
Unique NamemRNA_2673
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1546
Alignment locationscaffold_5:898811..900356 -

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Properties
Property NameValue
TranscriptId336159
TrackFilteredModels2
ProteinId336073
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:898811..900356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|336073gene_2673Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|336073mRNA_2673-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2673CDS_2673Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2673 ID=mRNA_2673|Name=jgi.p|Nanoce1779_2|336073|organism=Nannochloropsis oceanica|type=mRNA|length=1546bp
CAGAGGCGTCTCATGGCAGACGGGTCGACAGGCTGAATAGGTGCTACGCT
TGGCATAAGTTTATGCGCTACCTCTACATGGTGTCTTGATGGTGTGATTG
TGACAGGAGGGAAAGAGGGAAGGCCCATGCATTTAAATTCATCTCGGCAC
ATATTTCATGTGTAGACCGTTCGTTGCAGCTTTGCCAGCCCTGCCAGGAA
TGCTTCTTTCTTGCTCTTCCTCCACCTTCTTCAAAGATCATCAAGCCCAC
AAAATGCTCACTTCCTTGTCATATCACCCCAAGCGCAGACGGCTGAGTCC
AGTCCACGTGCCAATCCCCCTCGGTATGGCCCCTTTTCCATCCAAACCAC
ACCAATCAGCGATGGGACTTTGCCCCCTGCAAGCTACGGAACTCCAGTTC
CTATCGCCCTGTTCCCCCTCTCTGGCATCGCCCCACACCCGTCAGGCCCA
TCTCACTACGAAATGTGTCCTCTTGACCGTAGGCATCATTGCCAGCTTGG
CCTGGGCCGTGGGGTTGGCCGCCGTCTTGCTTCCAGAGTGGACTGTCGAG
GACGCCAATGTCGACAGCACTCTCAATGCCCACATCGGGCTCTTCGAGAC
CATCTACCACGTCGGAGAAGTCCGGGAGTCCTCCACCCTTCGATTCTGCA
ATGGTTTGGGTCCAATTTATTCGACGGAAAAATGCGTCATGTGGCGCGTG
GCACAAATTAGCGCGTTGGTTGGACTAGGCATGGGATACACGGGCCTTCT
CTTCTTATACAGTGCGGTGGGGAAGAGTTGGATCCGTCCTCGGAGAATGC
CAGAGGTGGTCGCGTGGGTGTGGACATTCTTTCTACTGGCAGGTGTGTGT
GCATTAGCAAGCGCGACTGCGTGGAAGTTTTTGGTGTTGGCTTTCATGCG
GGACCATGGCAAGTTGGGTGATGGGTACTCGGTAAAAATGGGCGTATCGA
TGCTGCTTATGGCGGGGGTAGGTGTGATCTTTCTGACTTTGCCATTCTGG
AGAATAGTGACGCAGTATTGGTTGGTGGGTAGTGGTAGTATAGCTGGATT
TTATAGGGGGAGGAAGAGTTCGTTGCCGTCGTCGTCAGAGGCATCAGCTG
TAGCAGAGACAGCGGGGAACAGCAGCAGCAGTAGCAGCCGCAGCAACAGC
AGCTGCGGCAGTAGCAGCGGCGGTGGCAACAAGTCTCGTGTTCAGAGACC
ACCTCATCGTCATAGCTTCAACAAGGAGGGGATCTCACGCTGGCGAAAAC
GGGCGGCGGACATCCTGCAATTGCCCAGGGTGGATAGCATGAAGGAGAAA
GAGGGAGGGTTGGAGGAAGGGGAAGAGGGGAGGGACGCAGATGAGGAGGA
AGGCGAGGGGAGCATGAGGAATCAGAAGGAAAGAATTGAATTGGCGAAAC
CTCCCATTGCCATTGGTTGTCAGAGTACAGAGCTTAAGTAGTAGACAAGA
AATGGATAGCACGACATTTAGATTGACTAGGAAGCGCCAAATAAAACAAA
TCACACAACACTAAATATACAAATACTGCCATTGTATATTTGGTTG
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protein sequence of jgi.p|Nanoce1779_2|336073

>mRNA_2673-protein ID=mRNA_2673-protein|Name=jgi.p|Nanoce1779_2|336073|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MCRPFVAALPALPGMLLSCSSSTFFKDHQAHKMLTSLSYHPKRRRLSPVH
VPIPLGMAPFPSKPHQSAMGLCPLQATELQFLSPCSPSLASPHTRQAHLT
TKCVLLTVGIIASLAWAVGLAAVLLPEWTVEDANVDSTLNAHIGLFETIY
HVGEVRESSTLRFCNGLGPIYSTEKCVMWRVAQISALVGLGMGYTGLLFL
YSAVGKSWIRPRRMPEVVAWVWTFFLLAGVCALASATAWKFLVLAFMRDH
GKLGDGYSVKMGVSMLLMAGVGVIFLTLPFWRIVTQYWLVGSGSIAGFYR
GRKSSLPSSSEASAVAETAGNSSSSSSRSNSSCGSSSGGGNKSRVQRPPH
RHSFNKEGISRWRKRAADILQLPRVDSMKEKEGGLEEGEEGRDADEEEGE
GSMRNQKERIELAKPPIAIGCQSTELK*
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mRNA from alignment at scaffold_5:898811..900356-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2673 ID=mRNA_2673|Name=jgi.p|Nanoce1779_2|336073|organism=Nannochloropsis oceanica|type=mRNA|length=1546bp|location=Sequence derived from alignment at scaffold_5:898811..900356- (Nannochloropsis oceanica)
CAGAGGCGTCTCATGGCAGACGGGTCGACAGGCTGAATAGGTGCTACGCT
TGGCATAAGTTTATGCGCTACCTCTACATGGTGTCTTGATGGTGTGATTG
TGACAGGAGGGAAAGAGGGAAGGCCCATGCATTTAAATTCATCTCGGCAC
ATATTTCATGTGTAGACCGTTCGTTGCAGCTTTGCCAGCCCTGCCAGGAA
TGCTTCTTTCTTGCTCTTCCTCCACCTTCTTCAAAGATCATCAAGCCCAC
AAAATGCTCACTTCCTTGTCATATCACCCCAAGCGCAGACGGCTGAGTCC
AGTCCACGTGCCAATCCCCCTCGGTATGGCCCCTTTTCCATCCAAACCAC
ACCAATCAGCGATGGGACTTTGCCCCCTGCAAGCTACGGAACTCCAGTTC
CTATCGCCCTGTTCCCCCTCTCTGGCATCGCCCCACACCCGTCAGGCCCA
TCTCACTACGAAATGTGTCCTCTTGACCGTAGGCATCATTGCCAGCTTGG
CCTGGGCCGTGGGGTTGGCCGCCGTCTTGCTTCCAGAGTGGACTGTCGAG
GACGCCAATGTCGACAGCACTCTCAATGCCCACATCGGGCTCTTCGAGAC
CATCTACCACGTCGGAGAAGTCCGGGAGTCCTCCACCCTTCGATTCTGCA
ATGGTTTGGGTCCAATTTATTCGACGGAAAAATGCGTCATGTGGCGCGTG
GCACAAATTAGCGCGTTGGTTGGACTAGGCATGGGATACACGGGCCTTCT
CTTCTTATACAGTGCGGTGGGGAAGAGTTGGATCCGTCCTCGGAGAATGC
CAGAGGTGGTCGCGTGGGTGTGGACATTCTTTCTACTGGCAGGTGTGTGT
GCATTAGCAAGCGCGACTGCGTGGAAGTTTTTGGTGTTGGCTTTCATGCG
GGACCATGGCAAGTTGGGTGATGGGTACTCGGTAAAAATGGGCGTATCGA
TGCTGCTTATGGCGGGGGTAGGTGTGATCTTTCTGACTTTGCCATTCTGG
AGAATAGTGACGCAGTATTGGTTGGTGGGTAGTGGTAGTATAGCTGGATT
TTATAGGGGGAGGAAGAGTTCGTTGCCGTCGTCGTCAGAGGCATCAGCTG
TAGCAGAGACAGCGGGGAACAGCAGCAGCAGTAGCAGCCGCAGCAACAGC
AGCTGCGGCAGTAGCAGCGGCGGTGGCAACAAGTCTCGTGTTCAGAGACC
ACCTCATCGTCATAGCTTCAACAAGGAGGGGATCTCACGCTGGCGAAAAC
GGGCGGCGGACATCCTGCAATTGCCCAGGGTGGATAGCATGAAGGAGAAA
GAGGGAGGGTTGGAGGAAGGGGAAGAGGGGAGGGACGCAGATGAGGAGGA
AGGCGAGGGGAGCATGAGGAATCAGAAGGAAAGAATTGAATTGGCGAAAC
CTCCCATTGCCATTGGTTGTCAGAGTACAGAGCTTAAGTAGTAGACAAGA
AATGGATAGCACGACATTTAGATTGACTAGGAAGCGCCAAATAAAACAAA
TCACACAACACTAAATATACAAATACTGCCATTGTATATTTGGTTG
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Coding sequence (CDS) from alignment at scaffold_5:898811..900356-

>mRNA_2673 ID=mRNA_2673|Name=jgi.p|Nanoce1779_2|336073|organism=Nannochloropsis oceanica|type=CDS|length=1284bp|location=Sequence derived from alignment at scaffold_5:898811..900356- (Nannochloropsis oceanica)
ATGTGTAGACCGTTCGTTGCAGCTTTGCCAGCCCTGCCAGGAATGCTTCT
TTCTTGCTCTTCCTCCACCTTCTTCAAAGATCATCAAGCCCACAAAATGC
TCACTTCCTTGTCATATCACCCCAAGCGCAGACGGCTGAGTCCAGTCCAC
GTGCCAATCCCCCTCGGTATGGCCCCTTTTCCATCCAAACCACACCAATC
AGCGATGGGACTTTGCCCCCTGCAAGCTACGGAACTCCAGTTCCTATCGC
CCTGTTCCCCCTCTCTGGCATCGCCCCACACCCGTCAGGCCCATCTCACT
ACGAAATGTGTCCTCTTGACCGTAGGCATCATTGCCAGCTTGGCCTGGGC
CGTGGGGTTGGCCGCCGTCTTGCTTCCAGAGTGGACTGTCGAGGACGCCA
ATGTCGACAGCACTCTCAATGCCCACATCGGGCTCTTCGAGACCATCTAC
CACGTCGGAGAAGTCCGGGAGTCCTCCACCCTTCGATTCTGCAATGGTTT
GGGTCCAATTTATTCGACGGAAAAATGCGTCATGTGGCGCGTGGCACAAA
TTAGCGCGTTGGTTGGACTAGGCATGGGATACACGGGCCTTCTCTTCTTA
TACAGTGCGGTGGGGAAGAGTTGGATCCGTCCTCGGAGAATGCCAGAGGT
GGTCGCGTGGGTGTGGACATTCTTTCTACTGGCAGGTGTGTGTGCATTAG
CAAGCGCGACTGCGTGGAAGTTTTTGGTGTTGGCTTTCATGCGGGACCAT
GGCAAGTTGGGTGATGGGTACTCGGTAAAAATGGGCGTATCGATGCTGCT
TATGGCGGGGGTAGGTGTGATCTTTCTGACTTTGCCATTCTGGAGAATAG
TGACGCAGTATTGGTTGGTGGGTAGTGGTAGTATAGCTGGATTTTATAGG
GGGAGGAAGAGTTCGTTGCCGTCGTCGTCAGAGGCATCAGCTGTAGCAGA
GACAGCGGGGAACAGCAGCAGCAGTAGCAGCCGCAGCAACAGCAGCTGCG
GCAGTAGCAGCGGCGGTGGCAACAAGTCTCGTGTTCAGAGACCACCTCAT
CGTCATAGCTTCAACAAGGAGGGGATCTCACGCTGGCGAAAACGGGCGGC
GGACATCCTGCAATTGCCCAGGGTGGATAGCATGAAGGAGAAAGAGGGAG
GGTTGGAGGAAGGGGAAGAGGGGAGGGACGCAGATGAGGAGGAAGGCGAG
GGGAGCATGAGGAATCAGAAGGAAAGAATTGAATTGGCGAAACCTCCCAT
TGCCATTGGTTGTCAGAGTACAGAGCTTAAGTAG
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Synonyms
Publications