jgi.p|Nanoce1779_2|581133, mRNA_2672 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581133
Unique Name	mRNA_2672
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2866
Alignment location	scaffold_5:893948..897458 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581219
Track	FilteredModels2
ProteinId	581133

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:893948..897458 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581133	gene_2672	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581133	mRNA_2672-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2672	CDS_2672	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:893948..897458+
coding sequence from alignment at scaffold_5:893948..897458+

mRNA sequence

>mRNA_2672 ID=mRNA_2672|Name=jgi.p|Nanoce1779_2|581133|organism=Nannochloropsis oceanica|type=mRNA|length=2866bp
ACAGCATGGCACCTTCATCATGTCGATGGCATCGACTCCTTTTGCTTGCG
GTTGCGGTCACTAGTACTCTGTTTTCCTCTACCCTAGTTCCAACCCAGGC
TTTCACACTGCTACGTCATCGGAGCTCGATGACGGTCAGCAAGTGGGAGG
ATTCCGCTACCCCACTACGCTCACGGACCCCACCTACTCTTAAGAGGATC
ACCATTATGTCAAGTTTTAGTGGCTACAGTGATTCCGCCAACATGCCGCA
TCCGCGAGCTGCTCCGACTCGAGGTCTTTTCCAACGACGCAGCCACCTGG
GCACCACGTCCCTCGCTGCATCCGCGATGGCGGCCCTATTCCTTTTTTCC
CCTTCCGCCGCATACGCTGCTCGCATCAAGGGTGCGGCCGAGCTCGATGC
CGAGGCATATCTCGTCGATTTGTTGAAAGGAAATCCTCTCACTGGTGGAG
CGGAGCAGTCCCCCCTCCCTATCCGCCCTGCCCGAGTGCTAGACAAAGAC
TTTGCCACCTTTCTGGACATGACTACCCTCGGATTGATAAGCAAGATCTC
GGGGCAATCTTTAGAGAAGGTGAACAAGGAAGTGAGTGCATTCCGACAGA
CTGTCGAACCGGGTTTCCAACGACGGGCACCTTTCCCCTCAGACGACTTA
ACGAATGAACGGTGCTTCGATTGCTATTCTTACGCCGATTTCCGCGTGGC
CGCCAAGCTTATTCCTGATCTCCGGGCCCGAGCGGTTTTTGTCCGAGACC
TAGGCGAAGCAGTTTTGAATGGAGTCATAAAGGGATCACCAGGTATCAAG
AGCAACGACGCTCAAAAAGATGGATTGGACGGAACTATAGAAGGAATGAA
GCAAATTTTGGCCTACATGCAGAGCAAAGGCTTTCTCAAGGATTCTAAAA
TAAATATCGAGGATTACGACAGGGCTTCGTGGGACGACGGGTATAATCTA
GAGCTGCTAGTGACGGTGGTGGAGCCAGCGACGTTGGGCGGTAATATTCA
ATTTACAGGGGAAGGGTTTTTGTTTCACCCGGACTATGTCGCCGAGACGC
TGTTGGCATACTTGGAGCGCTGTGGCGTGAAGGAAGCTAAGTCATTGCAG
TATCTGCTTGACACGGAGTATCGGCCCAACCCTAAGGACTACAACCCTAC
TGAGGTACTCTACCAGATAAGCGTGGAAAAGGGACGGCAGCCCCTATAAA
AAGAAAGGCCAGATAGGCATAAGCAGAATCCTGGATTAGGAAACAATCAA
CTAAACCAGTTTTAGAAGCACACACATTCAAGTCGTGACCATATCACATG
AGCAAGCAATGTACCACAAATACGAAATGCTCTCTTTCATAGCTTTGAGG
GATGCCACGGATGTCGGAAAGCCTTTTCTTGTTTGTTTTTGTAGCCCAAC
AGCAAGTCTCGGTCGGCGTAGTGGGGACAAGGGTGGGAGGGCTGTGGGTC
CGATGGAGTGGTAAAGATCTGGGGGGGTGGGGGCTGCCAGCTTCACTGAC
AGGCATTGAGGAGCGCTTTTTCACGTGGAGCATAGAAAATCAGGTATCGC
AATTTAATATACACCTTTTTTGTGTCCAAACACCTGAACCCAAATTCACG
CTCAATGGGCCGTGCACACGACGCGTTGCTTGGAGGTGAGACCTCATCAC
AGACGATAAAAAGTCTCGAGGGCTTTGCAAAGAAGCTATTTACCGCCTGC
CGCTCTATTTTCCCCTACAACAGCGGCTGTACCCGAACCACTCAGCCCTG
AAGGATCAGATAAGCGACGTCGACCTCCCCGCGCGCTCTTTCTTCCTTCT
GTACTCGTAAATTTGCGCTCACACCATCTTAACCCGTTTTACGACGACAG
AATAATGACGCAGCCCAAGCTCTCGGCGTTCTTTACCTCGTCGTCAAGCA
CTAAAAGCACGCCGGATCCCGCAGCACTATCTGGGGCTGGAGCACCGAAG
CGTGCCCTTGACAGCAGCGGAGGCGGGGTCGAAGGCGACTGTGGGACACC
GGCTGTGCAGGCGCCAGCAGCCAAAAAGGTGGCGGTCGAAAAGAGTACCA
TGAGCACTGCCTCTTCATTTTCCTCCTTTTCTCGATCCCCCTTTTCCTCG
GCGTCTTCCTCGTCCGCCTCCGCCTCCACCCCCTCCTTCCTCTCCTCTAG
CCTCGTACCCCACCCTGTTCTCCAGTCCCTCCCCATCATGGACGACGGCT
GGCGGCAATTGGTGACAAACGAAGCCAACAAACCCTACTTCAAACGTCTA
CTTGCCTTTCTTACTCAAGAAGCCACGAGCAAGCAAGTCGTCTACCCGCC
CTACCCATTGGTATTTACCGCCCTCACCCTCTGTAGGTGGACAGACGTCC
GCGTCGTTATCATCGGCCAAGACCCTTACCATGGGCCCAATCAAGCCCAT
GGACTCGCCTTCTCCGTTGTAGGCCCCACCCCTCCCCCTCCCAGTCTTAA
CAATATGTTTAAAGAAGCAGTTATGGACGTGGTTGGATTCATTAAGCCCT
CTCATGGCAACTTGGAGGCGTGGAGCCGCCAGGGTGTTTTACTGCTGAAC
ACTGTTTTGACTGTACGAAGGGGACAGGCACATTCGCATAAAGGCAAGGG
ATGGGAGAGCTTCACGGACGCGGTGATCAAGGAACTGGATGCGAAGAAGA
CAGGTTTGGTGTTCTTGTTGTGGGGTAAGCCAGCGCAGGAGAAATGCAAA
AACATCAACCGGAAGAAGCATCGCGTTATCCAGTGCGCCCATCCATCTCC
TCTCTCGGCCACCAAGACTAGCACGCCTTTTATTGGTTCCAAAAGTTTTT
CGCGAGCAAATTTGCTGTTGAAAGAGCTGGGGAAGGCGCCGATTGACTGG
CGATTGTAGGGGGAGG

protein sequence of jgi.p|Nanoce1779_2|581133

>mRNA_2672-protein ID=mRNA_2672-protein|Name=jgi.p|Nanoce1779_2|581133|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MTQPKLSAFFTSSSSTKSTPDPAALSGAGAPKRALDSSGGGVEGDCGTPA
VQAPAAKKVAVEKSTMSTASSFSSFSRSPFSSASSSSASASTPSFLSSSL
VPHPVLQSLPIMDDGWRQLVTNEANKPYFKRLLAFLTQEATSKQVVYPPY
PLVFTALTLCRWTDVRVVIIGQDPYHGPNQAHGLAFSVVGPTPPPPSLNN
MFKEAVMDVVGFIKPSHGNLEAWSRQGVLLLNTVLTVRRGQAHSHKGKGW
ESFTDAVIKELDAKKTGLVFLLWGKPAQEKCKNINRKKHRVIQCAHPSPL
SATKTSTPFIGSKSFSRANLLLKELGKAPIDWRL*

mRNA from alignment at scaffold_5:893948..897458+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2672 ID=mRNA_2672|Name=jgi.p|Nanoce1779_2|581133|organism=Nannochloropsis oceanica|type=mRNA|length=3511bp|location=Sequence derived from alignment at scaffold_5:893948..897458+ (Nannochloropsis oceanica)
ACAGCATGGCACCTTCATCATGTCGATGGCATCGACTCCTTTTGCTTGCG
GTTGCGGTCACTAGTACTCTGTTTTCCTCTACCCTAGTTCCAACCCAGGC
TTTCACACTGCTACGTCATCGGAGCTCGATGACGGTCAGCAAGTGGGAGG
ATTCCGCTACCCCACTACGCTCACGGACCCCACCTACTCTTAAGAGGATC
ACCATTATGTCAAGTTTTAGTGGCTACAGTGATTCCGCCAACATGCCGCA
TCCGCGAGCTGCTCCGACTCGAGGTCTTTTCCAACGACGCAGCCACCTGG
GCACCACGTCCCTCGCTGCATCCGCGATGGCGGCCCTATTCCTTTTTTCC
CCTTCCGCCGCATACGCTGCTCGCATCAAGGGTGCGGCCGAGCTCGATGC
CGAGGCATATCTCGTCGATTTGTTGAAAGGAAATCCTCTCACTGGTGGAG
CGGAGCAGTCCCCCCTCCCTATCCGCCCTGCCCGAGTGCTAGACAAAGAC
TTTGCCACCTTTCTGGACATGACTACCCTCGGATTGATAAGCAAGATCTC
GGGGCAATCTTTAGAGAAGGTGAACAAGGAAGTGAGTGCATTCCGACAGA
CTGTCGAACCGGGTTTCCAACGACGGGCACCTTTCCCCTCAGACGACTTA
ACGAATGAACGGTGCTTCGATTGCTATTCTTACGCCGATTTCCGCGTGGC
CGCCAAGCTTATTCCTGATCTCCGGGCCCGAGCGGTTTTTGTCCGAGACC
TAGGCGAAGCAGTTTTGAATGGAGTCATAAAGGGATCACCAGGTATCAAG
AGCAACGACGCTCAAAAAGATGGATTGGACGGAACTATAGAAGGAATGAA
GCAAATTTTGGCCTACATGCAGAGCAAAGGCTTTCTCAAGGATTCTAAAA
TAAATATCGAGGATTACGACAGGGCTTCGTGGGACGACGGGTATAATCTA
GAGCTGCTAGTGACGGTGGTGGAGCCAGCGACGTTGGGCGGTAATATTCA
ATTTACAGGGGAAGGGTTTTTGTTTCACCCGGACTATGTCGCCGAGACGC
TGTTGGCATACTTGGAGCGCTGTGGCGTGAAGGAAGCTAAGTCATTGCAG
GTATGGAAGGCAAAAAGGATTGGGGCGGGGGGGGGGAGAGGAGAAGATTG
GAATTTGTGGAAAGTGGGGAATTGATTGTTGGCAGCATTGGACTGGAGAG
ATGCATGACCCTTCCTCATGACCTCCCTCAACGGCTTTCCCCATCGATTG
AGGTGGACGAACTAAATAGGGTTAGACCTCTTAGTTACTTTATAAGACTC
ATTCAAATCCCACTTAACACTCTCACTCTTTCACGAAAAGTATCTGCTTG
ACACGGAGTATCGGCCCAACCCTAAGGACTACAACCCTACTGAGGTACTC
TACCAGATAAGCGTGGAAAAGGGACGGCAGCCCCTATAAAAAGAAAGGCC
AGATAGGCATAAGCAGAATCCTGGATTAGGAAACAATCAACTAAAGTACG
ATCGAAAAGGATAAAGTGGCTCTACAAGTAATATTCATCCTCCTCCATAA
TAGACTGCAAAACCTCATTTCAAAAATCGTCAAATTGTCATGCCCTCCCC
AGACCCCTTTCAAAAACATCCCTTTTACCTTCTCTGACAATGAAACTATC
CATATTTTCTATTGGACCGCTGATTGAAAACTCCGCCGACTCGTTTACAT
CATAACCACACCCAACTAGCCAGTTTTAGAAGCACACACATTCAAGTCGT
GACCATATCACATGAGCAAGCAATGTACCACAAATACGAAATGCTCTCTT
TCATAGCTTTGAGGGATGCCACGGATGTCGGAAAGCCTTTTCTTGTTTGT
TTTTGTAGCCCAACAGCAAGTCTCGGTCGGCGTAGTGGGGACAAGGGTGG
GAGGGCTGTGGGTCCGATGGAGTGGTAAAGATCTGGGGGGGTGGGGGCTG
CCAGCTTCACTGACAGGCATTGAGGAGCGCTTTTTCACGTGGAGCATAGA
AAATCAGGTATCGCAATTTAATATACACCTTTTTTGTGTCCAAACACCTG
AACCCAAATTCACGCTCAATGGGCCGTGCACACGACGCGTTGCTTGGAGG
TGAGACCTCATCACAGACGATAAAAAGTCTCGAGGGCTTTGCAAAGAAGC
TATTTACCGCCTGCCGCTCTATTTTCCCCTACAACAGCGGCTGTACCCGA
ACCACTCAGCCCTGAAGGATCAGATAAGCGACGTCGACCTCCCCGCGCGC
TCTTTCTTCCTTCTGTACTCGTAAATTTGCGCTCACACCATCTTAACCCG
TTTTACGACGACAGAATAATGACGCAGCCCAAGCTCTCGGCGTTCTTTAC
CTCGTCGTCAAGCACTAAAAGCACGCCGGATCCCGCAGCACTATCTGGGG
CTGGAGCACCGAAGCGTGCCCTTGACAGCAGCGGAGGCGGGGTCGAAGGC
GACTGTGGGACACCGGCTGTGCAGGCGCCAGCAGCCAAAAAGGTGGCGGT
CGAAAAGAGTACCATGAGCACTGCCTCTTCATTTTCCTCCTTTTCTCGAT
CCCCCTTTTCCTCGGCGTCTTCCTCGTCCGCCTCCGCCTCCACCCCCTCC
TTCCTCTCCTCTAGCCTCGTACCCCACCCTGTTCTCCAGTCCCTCCCCAT
CATGGACGACGGCTGGCGGCAATTGGTGACAAACGAAGCCAACAAACCCT
ACTTCAAACGTCTACTTGCCTTTCTTACTCAAGAAGCCACGAGCAAGCAA
GTCGTCTACCCGCCCTACCCATTGGTATTTACCGCCCTCACCCTCTGTAG
GTGGACAGACGTCCGCGTCGTTATCATCGGCCAAGACCCTTACCATGGGC
CCAATCAAGCCCATGGACTCGCCTTCTCCGTTGTAGGCCCCACCCCTCCC
CCTCCCAGTCTTAACAATATGTTTAAAGAAGCAGTTATGGACGTGGTTGG
ATTCATTAAGCCCTCTCATGGCAACTTGGAGGCGTGGAGCCGCCAGGGTG
TTTTACTGCTGAACACTGTTTTGACTGTACGAAGGGGACAGGCACATTCG
CATAAAGGCAAGGGATGGGAGAGCTTCACGGACGCGGTGATCAAGGAACT
GGATGCGAAGAAGACAGGTTTGGTGTTCTTGTTGTGGGGTAAGCCAGCGC
AGGTATGTTTTGGGGTGTAAGGGCTAGAGCTTGGGTATTGTAGGAGGATT
TAATGTGCTGTACGCTTCCAAGGCTGTTGGGTTTGAAACGACGATGGTTT
GTGTTTTCTTCATTTTCTGGGGTGTATCGCCATGATTCAAATCTTTTCAT
TTTCTCTCTTTCTCCCCTCCCTCCCTTCTGCAGGAGAAATGCAAAAACAT
CAACCGGAAGAAGCATCGCGTTATCCAGTGCGCCCATCCATCTCCTCTCT
CGGCCACCAAGACTAGCACGCCTTTTATTGGTTCCAAAAGTTTTTCGCGA
GCAAATTTGCTGTTGAAAGAGCTGGGGAAGGCGCCGATTGACTGGCGATT
GTAGGGGGAGG

Coding sequence (CDS) from alignment at scaffold_5:893948..897458+

>mRNA_2672 ID=mRNA_2672|Name=jgi.p|Nanoce1779_2|581133|organism=Nannochloropsis oceanica|type=CDS|length=2010bp|location=Sequence derived from alignment at scaffold_5:893948..897458+ (Nannochloropsis oceanica)
ATGACGCAGCCCAAGCTCTCGGCGTTCTTTACCTCGTCGTCAAGCACTAA
AAGCACGCCGGATCCCGCAGCACTATCTGGGGCTGGAGCACCGAAGCGTG
CCCTTGACAGCAGCGGAGGCGGGGTCGAAGGCGACTGTGGGACACCGGCT
GTGCAGGCGCCAGCAGCCAAAAAGGTGGCGGTCGAAAAGAGTACCATGAG
CACTGCCTCTTCATTTTCCTCCTTTTCTCGATCCCCCTTTTCCTCGGCGT
CTTCCTCGTCCGCCTCCGCCTCCACCCCCTCCTTCCTCTCCTCTAGCCTC
GTACCCCACCCTGTTCTCCAGTCCCTCCCCATCATGGACGACGGCTGGCG
GCAATTGGTGACAAACGAAGCCAACAAACCCTACTTCAAACGTCTACTTG
CCTTTCTTACTCAAGAAGCCACGAGCAAGCAAGTCGTCTACCCGCCCTAC
CCATTGGTATTTACCGCCCTCACCCTCTGTAGGTGGACAGACGTCCGCGT
CGTTATCATCGGCCAAGACCCTTACCATGGGCCCAATCAAGCCCATGGAC
TCGCCTTCTCCGTTGTAGGCCCCACCCCTCCCCCTCCCAGTCTTAACAAT
ATGTTTAAAGAAGCAGTTATGGACGTGGTTGGATTCATTAAGCCCTCTCA
TGGCAACTTGGAGGCGTGGAGCCGCCAGGGTGTTTTACTGCTGAACACTG
TTTTGACTGTACGAAGGGGACAGGCACATTCGCATAAAGGCAAGGGATGG
GAGAGCTTCACGGACGCGGTGATCAAGGAACTGGATGCGAAGAAGACAGG
TTTGGTGTTCTTGTTGTGGGGTAAGCCAGCGCAGGAGAAATGCAAAAACA
TCAACCGGAAGAAGCATCGCGTTATCCAGTGCGCCCATCCATCTCCTCTC
TCGGCCACCAAGACTAGCACGCCTTTTATTGGTTCCAAAAGTTTTTCGCG
AGCAAATTTGCTGTTGAAAGAGCTGGGGAAGGCGCCGATTGACTGGCGAT
TGTAGATGACGCAGCCCAAGCTCTCGGCGTTCTTTACCTCGTCGTCAAGC
ACTAAAAGCACGCCGGATCCCGCAGCACTATCTGGGGCTGGAGCACCGAA
GCGTGCCCTTGACAGCAGCGGAGGCGGGGTCGAAGGCGACTGTGGGACAC
CGGCTGTGCAGGCGCCAGCAGCCAAAAAGGTGGCGGTCGAAAAGAGTACC
ATGAGCACTGCCTCTTCATTTTCCTCCTTTTCTCGATCCCCCTTTTCCTC
GGCGTCTTCCTCGTCCGCCTCCGCCTCCACCCCCTCCTTCCTCTCCTCTA
GCCTCGTACCCCACCCTGTTCTCCAGTCCCTCCCCATCATGGACGACGGC
TGGCGGCAATTGGTGACAAACGAAGCCAACAAACCCTACTTCAAACGTCT
ACTTGCCTTTCTTACTCAAGAAGCCACGAGCAAGCAAGTCGTCTACCCGC
CCTACCCATTGGTATTTACCGCCCTCACCCTCTGTAGGTGGACAGACGTC
CGCGTCGTTATCATCGGCCAAGACCCTTACCATGGGCCCAATCAAGCCCA
TGGACTCGCCTTCTCCGTTGTAGGCCCCACCCCTCCCCCTCCCAGTCTTA
ACAATATGTTTAAAGAAGCAGTTATGGACGTGGTTGGATTCATTAAGCCC
TCTCATGGCAACTTGGAGGCGTGGAGCCGCCAGGGTGTTTTACTGCTGAA
CACTGTTTTGACTGTACGAAGGGGACAGGCACATTCGCATAAAGGCAAGG
GATGGGAGAGCTTCACGGACGCGGTGATCAAGGAACTGGATGCGAAGAAG
ACAGGTTTGGTGTTCTTGTTGTGGGGTAAGCCAGCGCAGGAGAAATGCAA
AAACATCAACCGGAAGAAGCATCGCGTTATCCAGTGCGCCCATCCATCTC
CTCTCTCGGCCACCAAGACTAGCACGCCTTTTATTGGTTCCAAAAGTTTT
TCGCGAGCAAATTTGCTGTTGAAAGAGCTGGGGAAGGCGCCGATTGACTG
GCGATTGTAG

Synonyms

Publications