jgi.p|Nanoce1779_2|336033, mRNA_2671 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|336033
Unique NamemRNA_2671
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length534
Alignment locationscaffold_5:895432..896193 +

Link to JBrowse

Properties
Property NameValue
TranscriptId336119
TrackFilteredModels2
ProteinId336033
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:895432..896193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|336033gene_2671Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|336033mRNA_2671-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2671CDS_2671Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2671 ID=mRNA_2671|Name=jgi.p|Nanoce1779_2|336033|organism=Nannochloropsis oceanica|type=mRNA|length=534bp
AATCAACTAAATTTTAGAAGCACACACATTCAAGTCGTGACCATATCACA
TGAGCAAGCAATGTACCACAAATACGAAATGCTCTCTTTCATAGCTTTGA
GGGATGCCACGGATGTCGGAAAGCCTTTTCTTGTTTGTTTTTGTAGCCCA
ACAGCAAGTCTCGGTCGGCGTAGTGGGGACAAGGGTGGGAGGGCTGTGGG
TCCGATGGAGTGGTAAAGATCTGGGGGGGTGGGGGCTGCCAGCTTCACTG
ACAGGCATTGAGGAGCGCTTTTTCACGTGGAGCATAGAAAATCAGGTATC
GCAATTTAATATACACCTTTTTTGTGTCCAAACACCTGAACCCAAATTCA
CGCTCAATGGGCCGTGCACACGACGCGTTGCTTGGAGGTGAGACCTCATC
ACAGACGATAAAAAGTCTCGAGGGCTTTGCAAAGAAGCTATTTACCGCCT
GCCGCTCTATTTTCCCCTACAACAGCGGCTGTACCCGAACCACTCAGCCC
TGAAGGATCAGATAAGCGACGTCGACCTCCCCGC
back to top

protein sequence of jgi.p|Nanoce1779_2|336033

>mRNA_2671-protein ID=mRNA_2671-protein|Name=jgi.p|Nanoce1779_2|336033|organism=Nannochloropsis oceanica|type=polypeptide|length=96bp
MPRMSESLFLFVFVAQQQVSVGVVGTRVGGLWVRWSGKDLGGWGLPASLT
GIEERFFTWSIENQVSQFNIHLFCVQTPEPKFTLNGPCTRRVAWR*
back to top

mRNA from alignment at scaffold_5:895432..896193+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2671 ID=mRNA_2671|Name=jgi.p|Nanoce1779_2|336033|organism=Nannochloropsis oceanica|type=mRNA|length=762bp|location=Sequence derived from alignment at scaffold_5:895432..896193+ (Nannochloropsis oceanica)
AATCAACTAAAGTACGATCGAAAAGGATAAAGTGGCTCTACAAGTAATAT
TCATCCTCCTCCATAATAGACTGCAAAACCTCATTTCAAAAATCGTCAAA
TTGTCATGCCCTCCCCAGACCCCTTTCAAAAACATCCCTTTTACCTTCTC
TGACAATGAAACTATCCATATTTTCTATTGGACCGCTGATTGAAAACTCC
GCCGACTCGTTTACATCATAACCACACCCAACTAGCCAGTTTTAGAAGCA
CACACATTCAAGTCGTGACCATATCACATGAGCAAGCAATGTACCACAAA
TACGAAATGCTCTCTTTCATAGCTTTGAGGGATGCCACGGATGTCGGAAA
GCCTTTTCTTGTTTGTTTTTGTAGCCCAACAGCAAGTCTCGGTCGGCGTA
GTGGGGACAAGGGTGGGAGGGCTGTGGGTCCGATGGAGTGGTAAAGATCT
GGGGGGGTGGGGGCTGCCAGCTTCACTGACAGGCATTGAGGAGCGCTTTT
TCACGTGGAGCATAGAAAATCAGGTATCGCAATTTAATATACACCTTTTT
TGTGTCCAAACACCTGAACCCAAATTCACGCTCAATGGGCCGTGCACACG
ACGCGTTGCTTGGAGGTGAGACCTCATCACAGACGATAAAAAGTCTCGAG
GGCTTTGCAAAGAAGCTATTTACCGCCTGCCGCTCTATTTTCCCCTACAA
CAGCGGCTGTACCCGAACCACTCAGCCCTGAAGGATCAGATAAGCGACGT
CGACCTCCCCGC
back to top

Coding sequence (CDS) from alignment at scaffold_5:895432..896193+

>mRNA_2671 ID=mRNA_2671|Name=jgi.p|Nanoce1779_2|336033|organism=Nannochloropsis oceanica|type=CDS|length=288bp|location=Sequence derived from alignment at scaffold_5:895432..896193+ (Nannochloropsis oceanica)
ATGCCACGGATGTCGGAAAGCCTTTTCTTGTTTGTTTTTGTAGCCCAACA
GCAAGTCTCGGTCGGCGTAGTGGGGACAAGGGTGGGAGGGCTGTGGGTCC
GATGGAGTGGTAAAGATCTGGGGGGGTGGGGGCTGCCAGCTTCACTGACA
GGCATTGAGGAGCGCTTTTTCACGTGGAGCATAGAAAATCAGGTATCGCA
ATTTAATATACACCTTTTTTGTGTCCAAACACCTGAACCCAAATTCACGC
TCAATGGGCCGTGCACACGACGCGTTGCTTGGAGGTGA
back to top
Synonyms
Publications