jgi.p|Nanoce1779_2|525191, mRNA_2670 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|525191
Unique NamemRNA_2670
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length957
Alignment locationscaffold_5:894190..895386 +

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Properties
Property NameValue
TranscriptId525277
TrackFilteredModels2
ProteinId525191
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:894190..895386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525191gene_2670Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525191mRNA_2670-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2670CDS_2670Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2670 ID=mRNA_2670|Name=jgi.p|Nanoce1779_2|525191|organism=Nannochloropsis oceanica|type=mRNA|length=957bp
ATGCCGCATCCGCGAGCTGCTCCGACTCGAGGTCTTTTCCAACGACGCAG
CCACCTGGGCACCACGTCCCTCGCTGCATCCGCGATGGCGGCCCTATTCC
TTTTTTCCCCTTCCGCCGCATACGCTGCTCGCATCAAGGGTGCGGCCGAG
CTCGATGCCGAGGCATATCTCGTCGATTTGTTGAAAGGAAATCCTCTCAC
TGGTGGAGCGGAGCAGTCCCCCCTCCCTATCCGCCCTGCCCGAGTGCTAG
ACAAAGACTTTGCCACCTTTCTGGACATGACTACCCTCGGATTGATAAGC
AAGATCTCGGGGCAATCTTTAGAGAAGGTGAACAAGGAAGTGAGTGCATT
CCGACAGACTGTCGAACCGGGTTTCCAACGACGGGCACCTTTCCCCTCAG
ACGACTTAACGAATGAACGGTGCTTCGATTGCTATTCTTACGCCGATTTC
CGCGTGGCCGCCAAGCTTATTCCTGATCTCCGGGCCCGAGCGGTTTTTGT
CCGAGACCTAGGCGAAGCAGTTTTGAATGGAGTCATAAAGGGATCACCAG
GTATCAAGAGCAACGACGCTCAAAAAGATGGATTGGACGGAACTATAGAA
GGAATGAAGCAAATTTTGGCCTACATGCAGAGCAAAGGCTTTCTCAAGGA
TTCTAAAATAAATATCGAGGATTACGACAGGGCTTCGTGGGACGACGGGT
ATAATCTAGAGCTGCTAGTGACGGTGGTGGAGCCAGCGACGTTGGGCGGT
AATATTCAATTTACAGGGGAAGGGTTTTTGTTTCACCCGGACTATGTCGC
CGAGACGCTGTTGGCATACTTGGAGCGCTGTGGCGTGAAGGAAGCTAAGT
CATTGCAGTATCTGCTTGACACGGAGTATCGGCCCAACCCTAAGGACTAC
AACCCTACTGAGGTACTCTACCAGATAAGCGTGGAAAAGGGACGGCAGCC
CCTATAA
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protein sequence of jgi.p|Nanoce1779_2|525191

>mRNA_2670-protein ID=mRNA_2670-protein|Name=jgi.p|Nanoce1779_2|525191|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MPHPRAAPTRGLFQRRSHLGTTSLAASAMAALFLFSPSAAYAARIKGAAE
LDAEAYLVDLLKGNPLTGGAEQSPLPIRPARVLDKDFATFLDMTTLGLIS
KISGQSLEKVNKEVSAFRQTVEPGFQRRAPFPSDDLTNERCFDCYSYADF
RVAAKLIPDLRARAVFVRDLGEAVLNGVIKGSPGIKSNDAQKDGLDGTIE
GMKQILAYMQSKGFLKDSKINIEDYDRASWDDGYNLELLVTVVEPATLGG
NIQFTGEGFLFHPDYVAETLLAYLERCGVKEAKSLQYLLDTEYRPNPKDY
NPTEVLYQISVEKGRQPL*
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mRNA from alignment at scaffold_5:894190..895386+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2670 ID=mRNA_2670|Name=jgi.p|Nanoce1779_2|525191|organism=Nannochloropsis oceanica|type=mRNA|length=1197bp|location=Sequence derived from alignment at scaffold_5:894190..895386+ (Nannochloropsis oceanica)
ATGCCGCATCCGCGAGCTGCTCCGACTCGAGGTCTTTTCCAACGACGCAG
CCACCTGGGCACCACGTCCCTCGCTGCATCCGCGATGGCGGCCCTATTCC
TTTTTTCCCCTTCCGCCGCATACGCTGCTCGCATCAAGGGTGCGGCCGAG
CTCGATGCCGAGGCATATCTCGTCGATTTGTTGAAAGGAAATCCTCTCAC
TGGTGGAGCGGAGCAGTCCCCCCTCCCTATCCGCCCTGCCCGAGTGCTAG
ACAAAGACTTTGCCACCTTTCTGGACATGACTACCCTCGGATTGATAAGC
AAGATCTCGGGGCAATCTTTAGAGAAGGTGAACAAGGAAGTGAGTGCATT
CCGACAGACTGTCGAACCGGGTTTCCAACGACGGGCACCTTTCCCCTCAG
ACGACTTAACGAATGAACGGTGCTTCGATTGCTATTCTTACGCCGATTTC
CGCGTGGCCGCCAAGCTTATTCCTGATCTCCGGGCCCGAGCGGTTTTTGT
CCGAGACCTAGGCGAAGCAGTTTTGAATGGAGTCATAAAGGGATCACCAG
GTATCAAGAGCAACGACGCTCAAAAAGATGGATTGGACGGAACTATAGAA
GGAATGAAGCAAATTTTGGCCTACATGCAGAGCAAAGGCTTTCTCAAGGA
TTCTAAAATAAATATCGAGGATTACGACAGGGCTTCGTGGGACGACGGGT
ATAATCTAGAGCTGCTAGTGACGGTGGTGGAGCCAGCGACGTTGGGCGGT
AATATTCAATTTACAGGGGAAGGGTTTTTGTTTCACCCGGACTATGTCGC
CGAGACGCTGTTGGCATACTTGGAGCGCTGTGGCGTGAAGGAAGCTAAGT
CATTGCAGGTATGGAAGGCAAAAAGGATTGGGGCGGGGGGGGGGAGAGGA
GAAGATTGGAATTTGTGGAAAGTGGGGAATTGATTGTTGGCAGCATTGGA
CTGGAGAGATGCATGACCCTTCCTCATGACCTCCCTCAACGGCTTTCCCC
ATCGATTGAGGTGGACGAACTAAATAGGGTTAGACCTCTTAGTTACTTTA
TAAGACTCATTCAAATCCCACTTAACACTCTCACTCTTTCACGAAAAGTA
TCTGCTTGACACGGAGTATCGGCCCAACCCTAAGGACTACAACCCTACTG
AGGTACTCTACCAGATAAGCGTGGAAAAGGGACGGCAGCCCCTATAA
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Coding sequence (CDS) from alignment at scaffold_5:894190..895386+

>mRNA_2670 ID=mRNA_2670|Name=jgi.p|Nanoce1779_2|525191|organism=Nannochloropsis oceanica|type=CDS|length=1914bp|location=Sequence derived from alignment at scaffold_5:894190..895386+ (Nannochloropsis oceanica)
ATGCCGCATCCGCGAGCTGCTCCGACTCGAGGTCTTTTCCAACGACGCAG
CCACCTGGGCACCACGTCCCTCGCTGCATCCGCGATGGCGGCCCTATTCC
TTTTTTCCCCTTCCGCCGCATACGCTGCTCGCATCAAGGGTGCGGCCGAG
CTCGATGCCGAGGCATATCTCGTCGATTTGTTGAAAGGAAATCCTCTCAC
TGGTGGAGCGGAGCAGTCCCCCCTCCCTATCCGCCCTGCCCGAGTGCTAG
ACAAAGACTTTGCCACCTTTCTGGACATGACTACCCTCGGATTGATAAGC
AAGATCTCGGGGCAATCTTTAGAGAAGGTGAACAAGGAAGTGAGTGCATT
CCGACAGACTGTCGAACCGGGTTTCCAACGACGGGCACCTTTCCCCTCAG
ACGACTTAACGAATGAACGGTGCTTCGATTGCTATTCTTACGCCGATTTC
CGCGTGGCCGCCAAGCTTATTCCTGATCTCCGGGCCCGAGCGGTTTTTGT
CCGAGACCTAGGCGAAGCAGTTTTGAATGGAGTCATAAAGGGATCACCAG
GTATCAAGAGCAACGACGCTCAAAAAGATGGATTGGACGGAACTATAGAA
GGAATGAAGCAAATTTTGGCCTACATGCAGAGCAAAGGCTTTCTCAAGGA
TTCTAAAATAAATATCGAGGATTACGACAGGGCTTCGTGGGACGACGGGT
ATAATCTAGAGCTGCTAGTGACGGTGGTGGAGCCAGCGACGTTGGGCGGT
AATATTCAATTTACAGGGGAAGGGTTTTTGTTTCACCCGGACTATGTCGC
CGAGACGCTGTTGGCATACTTGGAGCGCTGTGGCGTGAAGGAAGCTAAGT
CATTGCAGTATCTGCTTGACACGGAGTATCGGCCCAACCCTAAGGACTAC
AACCCTACTGAGGTACTCTACCAGATAAGCGTGGAAAAGGGACGGCAGCC
CCTATAAATGCCGCATCCGCGAGCTGCTCCGACTCGAGGTCTTTTCCAAC
GACGCAGCCACCTGGGCACCACGTCCCTCGCTGCATCCGCGATGGCGGCC
CTATTCCTTTTTTCCCCTTCCGCCGCATACGCTGCTCGCATCAAGGGTGC
GGCCGAGCTCGATGCCGAGGCATATCTCGTCGATTTGTTGAAAGGAAATC
CTCTCACTGGTGGAGCGGAGCAGTCCCCCCTCCCTATCCGCCCTGCCCGA
GTGCTAGACAAAGACTTTGCCACCTTTCTGGACATGACTACCCTCGGATT
GATAAGCAAGATCTCGGGGCAATCTTTAGAGAAGGTGAACAAGGAAGTGA
GTGCATTCCGACAGACTGTCGAACCGGGTTTCCAACGACGGGCACCTTTC
CCCTCAGACGACTTAACGAATGAACGGTGCTTCGATTGCTATTCTTACGC
CGATTTCCGCGTGGCCGCCAAGCTTATTCCTGATCTCCGGGCCCGAGCGG
TTTTTGTCCGAGACCTAGGCGAAGCAGTTTTGAATGGAGTCATAAAGGGA
TCACCAGGTATCAAGAGCAACGACGCTCAAAAAGATGGATTGGACGGAAC
TATAGAAGGAATGAAGCAAATTTTGGCCTACATGCAGAGCAAAGGCTTTC
TCAAGGATTCTAAAATAAATATCGAGGATTACGACAGGGCTTCGTGGGAC
GACGGGTATAATCTAGAGCTGCTAGTGACGGTGGTGGAGCCAGCGACGTT
GGGCGGTAATATTCAATTTACAGGGGAAGGGTTTTTGTTTCACCCGGACT
ATGTCGCCGAGACGCTGTTGGCATACTTGGAGCGCTGTGGCGTGAAGGAA
GCTAAGTCATTGCAGTATCTGCTTGACACGGAGTATCGGCCCAACCCTAA
GGACTACAACCCTACTGAGGTACTCTACCAGATAAGCGTGGAAAAGGGAC
GGCAGCCCCTATAA
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Synonyms
Publications