jgi.p|Nanoce1779_2|581118, mRNA_2666 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581118
Unique Name	mRNA_2666
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2198
Alignment location	scaffold_5:882617..884814 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581204
Track	FilteredModels2
ProteinId	581118

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:882617..884814 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581118	gene_2666	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581118	mRNA_2666-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2666	CDS_2666	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:882617..884814+
coding sequence from alignment at scaffold_5:882617..884814+

mRNA sequence

>mRNA_2666 ID=mRNA_2666|Name=jgi.p|Nanoce1779_2|581118|organism=Nannochloropsis oceanica|type=mRNA|length=2198bp
TGGGTGGGGTGAGGGGGAGGACGAGTGGGATGAGGACAAAGGTGAACATG
AAGAGGAGGAGAAAGAGGTGGGTAACGAGCATATTGCCTCGTTGGCCGAA
CGACTGATGCCGCGGATGAAGGGTATGGAGGGACTGGACGTACAAGCAAG
AGAAGCCAAAGAAAAGATGGCCTCGAGCAAGCACCGGCAAAAGAAAGGTG
GGAAAGGACCCGCAGCCGCTGCCCAAGAGACCGCTGACAACCATGTCCCT
GAAACGCATGAGGACACATTAGGCTCCGTCTTCCATCCAGTGCCACGGGA
TCCTAGCCTGCCAACCCATGCGTCCCTGGCCTTGGCTGAAGCCCAAGCAA
TATTGGCCATGCTGGCGCGGACGGAAGAGGAGCAGGAGGCATTGGATGCT
GAGAGGGAAGTGGCGGTCAAGGAGGCGATAATGCATGCATGGGATGGGTA
CAAACAGTGGGCATGGGGGATGGACGAACTAGCACCGGTGTCGAAGGAGG
GGTTGAATTGGTTCGGGCTAGGCTTGACGTTGGTAGACTCGTTGGACTTG
TTGTGGTTGGTGGGCGAAAAAGACGAGTTCCAGGGTGCCAGGGACTGGGT
TGTGAGCGAGCTTAACGTCGATCAAAACGTGCATGTCAATGTCTTTGAAA
CCACCATCCGCGTTATGGGTGGCCTTCTGTCCGCCTACCACTATTCAAAC
GACGAGGTCTTTCTCATCAAAGCCCAAGCTCTCGGCGCGAACCTTCGTTC
CGCTATGAACTCCCCTTCTGGTGTCCCCTGGTCTGACGCCATCCTCGCCA
CCAAACACGCCTTCGCCCCCGCTTCAGCCTCCGAAAGCTCCATCTCCGAG
GCGACTTCTATCCAATTAGAATTCAAATACTTGGCTTATGCCTCCAAGGA
CGAATCGCTCTACCGCCTCGCCGAGCATTCGATGCGTGCGGTGGACGCTG
CCAGGGCGGAGCTCCCCACAGAAGGGCACCGGCAGGCGTTGTTGCCCATG
TTTATCGATGCCAAGACGGGAAATTTCAACCAAGAGGCCACTATTACTCT
GGGGGCACGTGGCGATTCTTACTATGAGTATCTATTGAAGCAATGGCTGT
TAACGGGAAAAAAGGAGGACTTTTACAAGCAACGCTTCCTTGAGGCTGTG
GAGGGAATCAAGGCTGAATTATACCGACATTCTGAATCTGAGGGCAAGGC
CTTCATTGCCGAGTTGGGGAATGGCGTTAAATTTAGTCCCAAAATGGACC
ATTTAGTCTGTTATTTACCTGGAACGTTAGCCCTGGGCGTGTACCATGGC
CTGGACCCCGAGGGGACACGAGGACACATGGAGATGGCAAAAGAGTTGAT
GGTCACTTGTTTTGAGTTCTATAACCAGACAGCCACGGGACTTTCGCCTG
AGATTGCGCATTTCAGGGTGGATGCGTCCAATACTGCTCGGCGGTCCTCG
TCTGGGTCCTCAGATATGTATGTAAAACCAGCAGACGCCCACAATATTCT
GAGACCCGAGACGGTGGAAAGTTTATTTTACCTTTACCGAGTGACGGAGG
ACAGGGTATACCAGGAGTGGGCGTGGCAGATCTTTGTGGCGTTTGAGAAG
CATGCCAAGATTGAGACGGGAGGTTACTCGGGTTTGCGGAATGTCGAGGC
GCTGGACTCGGCGCGGATTGATAAAATGGAGAGCTTCTTTTTAGGGGAGA
CGTTGAAGTATTTTTATCTCTTGTTTGCGGACCCGGCACTGTTGTCGTTG
GATGAGGTGGTGTTCAATACGGAGGCACATCCCTTTCCGGTTTTAACTCT
GGAGGAGGATTGGTTGGTGTATAGAGGGAAGGGAGAGCAACCTCCCGTTG
CTGCGGGGAAGGAGAAGGAGGAGGTTGTGGAGGTCAAGGAGGAAGAGATG
GAGGCTGAGAAAGGGAGCGCAAGGGAGGAGAGCGTGAAAGAGGAAAGAGA
TGAGGAGGAAGGGATAGAAGAGATGGGAGAGGAGTTTAGAAGAGAAGAGG
AGGATGAAGTGTTGACGGCTGAAATCTAGAGTGTGAGAGGAAGGGAGACG
AAGGCAAGTAGGGTGGGAGAGAAAGAACTTGGGCTTGGTGTGGTTCAAAT
GACTGATGAAATGAGAAGGAGACAGACGACTGTGAAAGAGTATTGGACAC
TCTCAACCTAATGCGTTCAATTAATTTTATTATAAATTAGCGAAGAAC

protein sequence of jgi.p|Nanoce1779_2|581118

>mRNA_2666-protein ID=mRNA_2666-protein|Name=jgi.p|Nanoce1779_2|581118|organism=Nannochloropsis oceanica|type=polypeptide|length=641bp
MPRMKGMEGLDVQAREAKEKMASSKHRQKKGGKGPAAAAQETADNHVPET
HEDTLGSVFHPVPRDPSLPTHASLALAEAQAILAMLARTEEEQEALDAER
EVAVKEAIMHAWDGYKQWAWGMDELAPVSKEGLNWFGLGLTLVDSLDLLW
LVGEKDEFQGARDWVVSELNVDQNVHVNVFETTIRVMGGLLSAYHYSNDE
VFLIKAQALGANLRSAMNSPSGVPWSDAILATKHAFAPASASESSISEAT
SIQLEFKYLAYASKDESLYRLAEHSMRAVDAARAELPTEGHRQALLPMFI
DAKTGNFNQEATITLGARGDSYYEYLLKQWLLTGKKEDFYKQRFLEAVEG
IKAELYRHSESEGKAFIAELGNGVKFSPKMDHLVCYLPGTLALGVYHGLD
PEGTRGHMEMAKELMVTCFEFYNQTATGLSPEIAHFRVDASNTARRSSSG
SSDMYVKPADAHNILRPETVESLFYLYRVTEDRVYQEWAWQIFVAFEKHA
KIETGGYSGLRNVEALDSARIDKMESFFLGETLKYFYLLFADPALLSLDE
VVFNTEAHPFPVLTLEEDWLVYRGKGEQPPVAAGKEKEEVVEVKEEEMEA
EKGSAREESVKEERDEEEGIEEMGEEFRREEEDEVLTAEI*

mRNA from alignment at scaffold_5:882617..884814+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2666 ID=mRNA_2666|Name=jgi.p|Nanoce1779_2|581118|organism=Nannochloropsis oceanica|type=mRNA|length=2198bp|location=Sequence derived from alignment at scaffold_5:882617..884814+ (Nannochloropsis oceanica)
TGGGTGGGGTGAGGGGGAGGACGAGTGGGATGAGGACAAAGGTGAACATG
AAGAGGAGGAGAAAGAGGTGGGTAACGAGCATATTGCCTCGTTGGCCGAA
CGACTGATGCCGCGGATGAAGGGTATGGAGGGACTGGACGTACAAGCAAG
AGAAGCCAAAGAAAAGATGGCCTCGAGCAAGCACCGGCAAAAGAAAGGTG
GGAAAGGACCCGCAGCCGCTGCCCAAGAGACCGCTGACAACCATGTCCCT
GAAACGCATGAGGACACATTAGGCTCCGTCTTCCATCCAGTGCCACGGGA
TCCTAGCCTGCCAACCCATGCGTCCCTGGCCTTGGCTGAAGCCCAAGCAA
TATTGGCCATGCTGGCGCGGACGGAAGAGGAGCAGGAGGCATTGGATGCT
GAGAGGGAAGTGGCGGTCAAGGAGGCGATAATGCATGCATGGGATGGGTA
CAAACAGTGGGCATGGGGGATGGACGAACTAGCACCGGTGTCGAAGGAGG
GGTTGAATTGGTTCGGGCTAGGCTTGACGTTGGTAGACTCGTTGGACTTG
TTGTGGTTGGTGGGCGAAAAAGACGAGTTCCAGGGTGCCAGGGACTGGGT
TGTGAGCGAGCTTAACGTCGATCAAAACGTGCATGTCAATGTCTTTGAAA
CCACCATCCGCGTTATGGGTGGCCTTCTGTCCGCCTACCACTATTCAAAC
GACGAGGTCTTTCTCATCAAAGCCCAAGCTCTCGGCGCGAACCTTCGTTC
CGCTATGAACTCCCCTTCTGGTGTCCCCTGGTCTGACGCCATCCTCGCCA
CCAAACACGCCTTCGCCCCCGCTTCAGCCTCCGAAAGCTCCATCTCCGAG
GCGACTTCTATCCAATTAGAATTCAAATACTTGGCTTATGCCTCCAAGGA
CGAATCGCTCTACCGCCTCGCCGAGCATTCGATGCGTGCGGTGGACGCTG
CCAGGGCGGAGCTCCCCACAGAAGGGCACCGGCAGGCGTTGTTGCCCATG
TTTATCGATGCCAAGACGGGAAATTTCAACCAAGAGGCCACTATTACTCT
GGGGGCACGTGGCGATTCTTACTATGAGTATCTATTGAAGCAATGGCTGT
TAACGGGAAAAAAGGAGGACTTTTACAAGCAACGCTTCCTTGAGGCTGTG
GAGGGAATCAAGGCTGAATTATACCGACATTCTGAATCTGAGGGCAAGGC
CTTCATTGCCGAGTTGGGGAATGGCGTTAAATTTAGTCCCAAAATGGACC
ATTTAGTCTGTTATTTACCTGGAACGTTAGCCCTGGGCGTGTACCATGGC
CTGGACCCCGAGGGGACACGAGGACACATGGAGATGGCAAAAGAGTTGAT
GGTCACTTGTTTTGAGTTCTATAACCAGACAGCCACGGGACTTTCGCCTG
AGATTGCGCATTTCAGGGTGGATGCGTCCAATACTGCTCGGCGGTCCTCG
TCTGGGTCCTCAGATATGTATGTAAAACCAGCAGACGCCCACAATATTCT
GAGACCCGAGACGGTGGAAAGTTTATTTTACCTTTACCGAGTGACGGAGG
ACAGGGTATACCAGGAGTGGGCGTGGCAGATCTTTGTGGCGTTTGAGAAG
CATGCCAAGATTGAGACGGGAGGTTACTCGGGTTTGCGGAATGTCGAGGC
GCTGGACTCGGCGCGGATTGATAAAATGGAGAGCTTCTTTTTAGGGGAGA
CGTTGAAGTATTTTTATCTCTTGTTTGCGGACCCGGCACTGTTGTCGTTG
GATGAGGTGGTGTTCAATACGGAGGCACATCCCTTTCCGGTTTTAACTCT
GGAGGAGGATTGGTTGGTGTATAGAGGGAAGGGAGAGCAACCTCCCGTTG
CTGCGGGGAAGGAGAAGGAGGAGGTTGTGGAGGTCAAGGAGGAAGAGATG
GAGGCTGAGAAAGGGAGCGCAAGGGAGGAGAGCGTGAAAGAGGAAAGAGA
TGAGGAGGAAGGGATAGAAGAGATGGGAGAGGAGTTTAGAAGAGAAGAGG
AGGATGAAGTGTTGACGGCTGAAATCTAGAGTGTGAGAGGAAGGGAGACG
AAGGCAAGTAGGGTGGGAGAGAAAGAACTTGGGCTTGGTGTGGTTCAAAT
GACTGATGAAATGAGAAGGAGACAGACGACTGTGAAAGAGTATTGGACAC
TCTCAACCTAATGCGTTCAATTAATTTTATTATAAATTAGCGAAGAAC

Coding sequence (CDS) from alignment at scaffold_5:882617..884814+

>mRNA_2666 ID=mRNA_2666|Name=jgi.p|Nanoce1779_2|581118|organism=Nannochloropsis oceanica|type=CDS|length=1923bp|location=Sequence derived from alignment at scaffold_5:882617..884814+ (Nannochloropsis oceanica)
ATGCCGCGGATGAAGGGTATGGAGGGACTGGACGTACAAGCAAGAGAAGC
CAAAGAAAAGATGGCCTCGAGCAAGCACCGGCAAAAGAAAGGTGGGAAAG
GACCCGCAGCCGCTGCCCAAGAGACCGCTGACAACCATGTCCCTGAAACG
CATGAGGACACATTAGGCTCCGTCTTCCATCCAGTGCCACGGGATCCTAG
CCTGCCAACCCATGCGTCCCTGGCCTTGGCTGAAGCCCAAGCAATATTGG
CCATGCTGGCGCGGACGGAAGAGGAGCAGGAGGCATTGGATGCTGAGAGG
GAAGTGGCGGTCAAGGAGGCGATAATGCATGCATGGGATGGGTACAAACA
GTGGGCATGGGGGATGGACGAACTAGCACCGGTGTCGAAGGAGGGGTTGA
ATTGGTTCGGGCTAGGCTTGACGTTGGTAGACTCGTTGGACTTGTTGTGG
TTGGTGGGCGAAAAAGACGAGTTCCAGGGTGCCAGGGACTGGGTTGTGAG
CGAGCTTAACGTCGATCAAAACGTGCATGTCAATGTCTTTGAAACCACCA
TCCGCGTTATGGGTGGCCTTCTGTCCGCCTACCACTATTCAAACGACGAG
GTCTTTCTCATCAAAGCCCAAGCTCTCGGCGCGAACCTTCGTTCCGCTAT
GAACTCCCCTTCTGGTGTCCCCTGGTCTGACGCCATCCTCGCCACCAAAC
ACGCCTTCGCCCCCGCTTCAGCCTCCGAAAGCTCCATCTCCGAGGCGACT
TCTATCCAATTAGAATTCAAATACTTGGCTTATGCCTCCAAGGACGAATC
GCTCTACCGCCTCGCCGAGCATTCGATGCGTGCGGTGGACGCTGCCAGGG
CGGAGCTCCCCACAGAAGGGCACCGGCAGGCGTTGTTGCCCATGTTTATC
GATGCCAAGACGGGAAATTTCAACCAAGAGGCCACTATTACTCTGGGGGC
ACGTGGCGATTCTTACTATGAGTATCTATTGAAGCAATGGCTGTTAACGG
GAAAAAAGGAGGACTTTTACAAGCAACGCTTCCTTGAGGCTGTGGAGGGA
ATCAAGGCTGAATTATACCGACATTCTGAATCTGAGGGCAAGGCCTTCAT
TGCCGAGTTGGGGAATGGCGTTAAATTTAGTCCCAAAATGGACCATTTAG
TCTGTTATTTACCTGGAACGTTAGCCCTGGGCGTGTACCATGGCCTGGAC
CCCGAGGGGACACGAGGACACATGGAGATGGCAAAAGAGTTGATGGTCAC
TTGTTTTGAGTTCTATAACCAGACAGCCACGGGACTTTCGCCTGAGATTG
CGCATTTCAGGGTGGATGCGTCCAATACTGCTCGGCGGTCCTCGTCTGGG
TCCTCAGATATGTATGTAAAACCAGCAGACGCCCACAATATTCTGAGACC
CGAGACGGTGGAAAGTTTATTTTACCTTTACCGAGTGACGGAGGACAGGG
TATACCAGGAGTGGGCGTGGCAGATCTTTGTGGCGTTTGAGAAGCATGCC
AAGATTGAGACGGGAGGTTACTCGGGTTTGCGGAATGTCGAGGCGCTGGA
CTCGGCGCGGATTGATAAAATGGAGAGCTTCTTTTTAGGGGAGACGTTGA
AGTATTTTTATCTCTTGTTTGCGGACCCGGCACTGTTGTCGTTGGATGAG
GTGGTGTTCAATACGGAGGCACATCCCTTTCCGGTTTTAACTCTGGAGGA
GGATTGGTTGGTGTATAGAGGGAAGGGAGAGCAACCTCCCGTTGCTGCGG
GGAAGGAGAAGGAGGAGGTTGTGGAGGTCAAGGAGGAAGAGATGGAGGCT
GAGAAAGGGAGCGCAAGGGAGGAGAGCGTGAAAGAGGAAAGAGATGAGGA
GGAAGGGATAGAAGAGATGGGAGAGGAGTTTAGAAGAGAAGAGGAGGATG
AAGTGTTGACGGCTGAAATCTAG

Synonyms

Publications