jgi.p|Nanoce1779_2|581112, mRNA_2665 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581112
Unique Name	mRNA_2665
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3555
Alignment location	scaffold_5:878072..881849 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581198
Track	FilteredModels2
ProteinId	581112

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:878072..881849 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581112	gene_2665	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581112	mRNA_2665-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2665	CDS_2665	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:878072..881849+
coding sequence from alignment at scaffold_5:878072..881849+

mRNA sequence

>mRNA_2665 ID=mRNA_2665|Name=jgi.p|Nanoce1779_2|581112|organism=Nannochloropsis oceanica|type=mRNA|length=3555bp
ACAGGACGCGCTTCTGTTTGTTGACCCTCCACTCAGGCGTGGCAACAGTG
AGGTAAACTGGACACAATGCGCCCCGCCTCGCCCCGTGAGGGCTCCCAGC
TGTCCGCGTCATGGATTATCCTCGATCAGGACGGGGAGGAGGTGGCCCTG
CAGCAGCGAAGCCCACGCATCTGCCATACGTTCAACGAAGACGAAGAGGA
GATGCTGGGCATGTTGTCTCTTCATCCGGACGAGGCGGCCGCTTTCACGA
GCAGTACCGGGGGCCGGTCCATGTGGGGTAGCATGTTCTGTATGCTTGAC
CGCGGGACCATGGCCATGCCTGCTGCTACGACGGCAGAGGGGGAGGAAAG
GGAGGAAGAAATGAAAGAGGAAGAGGAGCGGAACGAGGACGCGGGTGCGA
CAGGTGAAATGCAAGATCAGCAACAGGAGGAACAGCAACCCGCCGCGCCA
GTTGCAGCGGCAGCAGCAGTCGATTCGGTGCCTGCTATTTCGGAAGATGG
GAAGGAGAGCGGAGACGAAGGGGACATTAAGGATGGTGGGTGGTGGAATC
ATGTCCCGTCTCTTTTGATGACGCATCTCAGGACTATCCTCAAAACCCTC
TCGAACCCTCCGTCATGCTGCTGCCTCCAAGACGAGCTGCGTTCGGCTTG
CCCCTACCTCAGAAGGCAACCCCGGCAACGCATCCTCTTGATCACTGTTG
TCGTGCCTGTCGCGATGATGGTCGGGGTGACAGCCGCCGTGGTCCTGGTC
GGTGTGTGCGCGTCGGGCTCGTCCTCCTCCCCGTCGACAACGAAGCGCGG
AGGCCGCGAGTCGTGCCCGGCCACGACGCCATGTTCCAGCGCCTCCTCGA
GCACTGCCAAAGCGCCCCTCTTCCGCGTCTTGTAAAAAAATGAACATGAG
AAGAATAGAGGAAGTGCCAAAAATTGTGTGAATACTTGATCAATTTGTGA
ATCAAAAAGAGCAGCATCTTCAGCCACAACGTCCCAGTAATCGTTTTTTT
TTTTTTAATAAAAAATGGAAATAGTCGCGACTCAGTGAGAGCATTTTTAT
GTGCATCGAATGCGTGAAGACATGAAAAAGAAAGGGAAAGACGGGAGATG
GAAGAAAGAGAGAGAGAGCGTGAGATGTGTGTGCAGTGCCGATCACCATG
ATATGGGGTGTGGCAGCAAGATAGCGTGTAAATCCCAGTATCCGTTTGCG
AAAAACGAGAGAAGTAAGAGAAACTTCGTAGTGTAAAAGTGTATGTACGT
GTGGAATGGTTTAGGGGGGCGGGGGTTTTACGTAGCTTTCCCGTGCGTCC
ACCATCTCCCTTTCGATCAATCAGTTGAGGGGCTTAAAGTACGCGAAAGC
TTGCACGAGGACGCCCATCCGACAAAGAGCAACCAATAACAAAGAAGAGG
ACGACGTGACGATGACAAGAGACTAGCAAGCAAGAGGCTGGCTGTGTGCG
GCCCATGGTTTGAGAGCAGGATGAGGGAATGTATCTGGTTGATGAAGGAT
CCGCCTGTTGCGAGCCTTCTTCATCTTCTCGTTCGCCCTCCGCGCTCTGC
TTTTGTTCACCTGGTAATCTGTTGTACGTATCACAGTCGTGAGCTCTGTC
ATACCAGTGTGTGCGGTGCAGAGATGCAGGTGGTAACAATGCCCGCGAGT
CCTTCACACGTTCGAACGCGGTCCTGATGCGCCACTCGCCTCCCCTCCCC
CCCCTCCACTTGGCTGCAGGGAGCCCGAACTGATCTTACTTCTATACACC
CACACACGGACTTCCTTCTGTTGCCCTTCTTCCTTGACGGCCAGCTAGAT
TGGACGCGGCTATTTTAATCGAGGCCGCAGTCCTGTAGCGGCCAGACTGG
CTTGTCCATTGCTCCATAGCTAGCCTCCATGCCTCAGTCCCTTTGTTCCT
CATGGCCTGAAAGCCGTATTATCTTTGACGACGATAATAATATGACCATC
TCACTTATATTGATTCCCTCCCATTTTCACCCTACACAGTCGTTATTCGT
ATACATAAGAAGACCATGTTCCGCAAGCTTGCGCTGGCCCTCCTGTGCTC
CTCCGCCGTCGCCTTCCAGGTGCCGGCCCCCCTCACCCGAGGCTCGGTGC
GCCTTCATGCCGAAGGCAAGCCCGCCGCTCCCCCTGCCGCCGCTCCCCCT
GCCGCTGCTCCCGCTGCTGCGGCTCCCGCTGCTGCCGCCCCAGCTGCCGC
CGCTGTCAAGCCCCCTCCTCCCCCACCCCCCCCTAAGGTCTTCTCCAAGT
CGGTGCCTTTCCTGTTGAAGCCTGCGGGTCTGGACGGGATGGTCGGCGAC
GTCGGCTTTGATCCCCTAGGGTTCGCGACCTTCATCGACATCCGATGGCT
GCGAGAGGCTGAGCTGAAGAACGGCCGAGTGGCCATGCTCGCCTTCCTGG
GCTTTATCGTCCAAGAGTTTATCCGCCTCCCTGGTGACCTCTACTCGGAG
CCCAACGGCGTCAAGGCGTTCTTCCAAGTCGGACCCCAGCCGCTTCTGCA
AATCTTCCTGTTCTGCGGTTTTCTTGAGTTTAATATGCACAAGGGTAAGC
TGACTCAAGTCGACATGTTTGAGGACGGCAAGCGCGAGCCCGGCAACTTT
GGGTTCGATCCGCTTGGATTTGGCAAGGACCCTGCGAAGCGCGAGAGGTA
TGCACTTGCTGAGCTGAAGAACGGCCGGTTGGCAATGATTGCGATCGGCG
GCCTGGTGCACCATGCGTTGGTGACAGGTCATGCCACGTTTAGTAGCTAA
GTGGATTGTCTTTGTTTTTGGTGGCCTGTTTTGAAATGGAGGGCGAAGGG
GCAATGGGGTAGATGGAAAGGGAGGGAGAGAGGCGAGACGGGAGGAGGAA
GTACTGTGTGTTGGTGAAAACACAGGGGTCGCAAAAACCAAGCTGGCTAG
TTTGTGTTGATGCTGATGACATTATATGGAAGGGTGACATATCCTTTCTT
AACTTCACCGCCCCTGGCTCCACCGGTGCACGTCATGTTGGTTTCTTCGT
ACATGTTTCCGAAAAAGAAAGGAAAGCGGATGTGCGTGATCGATGAGAGA
GTGATTTTGGTCAGCATGCGTGCGTGTGGTGGGTGGCATCACACAAGGAA
AGAAGGGTGTTCATGTAGAAGAGAGGATGTTTTGAAATGGAGGGCGAAGG
GGCAATGGGGTAGATGGAAAGGGAGGGAGAGAGGCGGGAAGAGCGAGGGA
AGAGGGGAGCGGGAAAGAAGTAAAAACAGCAATGACAACAATCAATGGAG
AAACATGATTGCTATTTGACTCCTCACTCTCCCGATCTTATGCTCGAACA
ATTGTGAACGAGAATACTTGATGGGACGTCAATGCAAAGCGATGACAAGC
AAAATTCTTTTTGAACGATCCTTCTCAGAACTCAGTTGCCTTTCATAACG
GACAACTTGAAAGCAAGCAAGCCCCCCAAACACGCAGGGAAATCGCCGTA
CAACCTAATGCGTTCACCCATGCACCTGACACCCTCACCACTATCACAGA
ACATAGCACAGGCAGGCATAAGTCGCCTGTTGTTGTCTGCCCCAACAAGG
GGCCA

protein sequence of jgi.p|Nanoce1779_2|581112

>mRNA_2665-protein ID=mRNA_2665-protein|Name=jgi.p|Nanoce1779_2|581112|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MFRKLALALLCSSAVAFQVPAPLTRGSVRLHAEGKPAAPPAAAPPAAAPA
AAAPAAAAPAAAAVKPPPPPPPPKVFSKSVPFLLKPAGLDGMVGDVGFDP
LGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVK
AFFQVGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPL
GFGKDPAKRERYALAELKNGRLAMIAIGGLVHHALVTGHATFSS*

mRNA from alignment at scaffold_5:878072..881849+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2665 ID=mRNA_2665|Name=jgi.p|Nanoce1779_2|581112|organism=Nannochloropsis oceanica|type=mRNA|length=3778bp|location=Sequence derived from alignment at scaffold_5:878072..881849+ (Nannochloropsis oceanica)
ACAGGACGCGCTTCTGTTTGTTGACCCTCCACTCAGGCGTGGCAACAGTG
AGGTAAACTGGACACAATGCGCCCCGCCTCGCCCCGTGAGGGCTCCCAGC
TGTCCGCGTCATGGATTATCCTCGATCAGGACGGGGAGGAGGTGGCCCTG
CAGCAGGTAAGACCCGAAAGGCACACACAAGTTGACACGCCATGGAAATA
GGTCCCACGCTCGCTTTGGCCCCTTCCCTCTTCTGCCACACCCACAGCGA
AGCCCACGCATCTGCCATACGTTCAACGAAGACGAAGAGGAGATGCTGGG
CATGTTGTCTCTTCATCCGGACGAGGCGGCCGCTTTCACGAGCAGTACCG
GGGGCCGGTCCATGTGGGGTAGCATGTTCTGTATGCTTGACCGCGGGACC
ATGGCCATGCCTGCTGCTACGACGGCAGAGGGGGAGGAAAGGGAGGAAGA
AATGAAAGAGGAAGAGGAGCGGAACGAGGACGCGGGTGCGACAGGTGAAA
TGCAAGATCAGCAACAGGAGGAACAGCAACCCGCCGCGCCAGTTGCAGCG
GCAGCAGCAGTCGATTCGGTGCCTGCTATTTCGGAAGATGGGAAGGAGAG
CGGAGACGAAGGGGACATTAAGGATGGTGGGTGGTGGAATCATGTCCCGT
CTCTTTTGATGACGCATCTCAGGACTATCCTCAAAACCCTCTCGAACCCT
CCGTCATGCTGCTGCCTCCAAGACGAGCTGCGTTCGGCTTGCCCCTACCT
CAGAAGGCAACCCCGGCAACGCATCCTCTTGATCACTGTTGTCGTGCCTG
TCGCGATGATGGTCGGGGTGACAGCCGCCGTGGTCCTGGTCGGTGTGTGC
GCGTCGGGCTCGTCCTCCTCCCCGTCGACAACGAAGCGCGGAGGCCGCGA
GTCGTGCCCGGCCACGACGCCATGTTCCAGCGCCTCCTCGAGCACTGCCA
AAGCGCCCCTCTTCCGCGTCTTGTAAAAAAATGAACATGAGAAGAATAGA
GGAAGTGCCAAAAATTGTGTGAATACTTGATCAATTTGTGAATCAAAAAG
AGCAGCATCTTCAGCCACAACGTCCCAGTAATCGTTTTTTTTTTTTTAAT
AAAAAATGGAAATAGTCGCGACTCAGTGAGAGCATTTTTATGTGCATCGA
ATGCGTGAAGACATGAAAAAGAAAGGGAAAGACGGGAGATGGAAGAAAGA
GAGAGAGAGCGTGAGATGTGTGTGCAGTGCCGATCACCATGATATGGGGT
GTGGCAGCAAGATAGCGTGTAAATCCCAGTATCCGTTTGCGAAAAACGAG
AGAAGTAAGAGAAACTTCGTAGTGTAAAAGTGTATGTACGTGTGGAATGG
TTTAGGGGGGCGGGGGTTTTACGTAGCTTTCCCGTGCGTCCACCATCTCC
CTTTCGATCAATCAGTTGAGGGGCTTAAAGTACGCGAAAGCTTGCACGAG
GACGCCCATCCGACAAAGAGCAACCAATAACAAAGAAGAGGACGACGTGA
CGATGACAAGAGACTAGCAAGCAAGAGGCTGGCTGTGTGCGGCCCATGGT
TTGAGAGCAGGATGAGGGAATGTATCTGGTTGATGAAGGATCCGCCTGTT
GCGAGCCTTCTTCATCTTCTCGTTCGCCCTCCGCGCTCTGCTTTTGTTCA
CCTGGTAATCTGTTGTACGTATCACAGTCGTGAGCTCTGTCATACCAGTG
TGTGCGGTGCAGAGATGCAGGTGGTAACAATGCCCGCGAGTCCTTCACAC
GTTCGAACGCGGTCCTGATGCGCCACTCGCCTCCCCTCCCCCCCCTCCAC
TTGGCTGCAGGGAGCCCGAACTGATCTTACTTCTATACACCCACACACGG
ACTTCCTTCTGTTGCCCTTCTTCCTTGACGGCCAGCTAGATTGGACGCGG
CTATTTTAATCGAGGCCGCAGTCCTGTAGCGGCCAGACTGGCTTGTCCAT
TGCTCCATAGCTAGCCTCCATGCCTCAGTCCCTTTGTTCCTCATGGCCTG
AAAGCCGTATTATCTTTGACGACGATAATAATATGACCATCTCACTTATA
TTGATTCCCTCCCATTTTCACCCTACACAGTCGTTATTCGTATACATAAG
AAGACCATGTTCCGCAAGCTTGCGCTGGCCCTCCTGTGCTCCTCCGCCGT
CGCCTTCCAGGTGCCGGCCCCCCTCACCCGAGGCTCGGTGCGCCTTCATG
CCGAAGGCAAGCCCGCCGCTCCCCCTGCCGCCGCTCCCCCTGCCGCTGCT
CCCGCTGCTGCGGCTCCCGCTGCTGCCGCCCCAGCTGCCGCCGCTGTCAA
GCCCCCTCCTCCCCCACCCCCCCCTAAGGTCTTCTCCAAGTCGGTGCCTT
TCCTGTTGAAGCCTGCGGGTCTGGACGGGATGGTCGGCGACGTCGGCTTT
GATCCCCTAGGGTTCGCGACCTTCATCGACATCCGATGGCTGCGAGAGGC
TGAGCTGAAGAACGGTATGTCCTCACAATTATGATGAGGATAGGGCGTGT
GTCGTATTGTCGGGCAGGCAAGACAGGAAGAATATGAGAAGCCTTATAAC
GACCTTCTCACACCACCCCTCTCTCCTATGAAAATCTTCACCCCAGGCCG
AGTGGCCATGCTCGCCTTCCTGGGCTTTATCGTCCAAGAGTTTATCCGCC
TCCCTGGTGACCTCTACTCGGAGCCCAACGGCGTCAAGGCGTTCTTCCAA
GTCGGACCCCAGCCGCTTCTGCAAATCTTCCTGTTCTGCGGTTTTCTTGA
GTTTAATATGCACAAGGGTAAGCTGACTCAAGTCGACATGTTTGAGGACG
GCAAGCGCGAGCCCGGCAACTTTGGGTTCGATCCGCTTGGATTTGGCAAG
GACCCTGCGAAGCGCGAGAGGTATGCACTTGCTGAGCTGAAGAACGGCCG
GTTGGCAATGATTGCGATCGGCGGCCTGGTGCACCATGCGTTGGTGACAG
GTCATGCCACGTTTAGTAGCTAAGTGGATTGTCTTTGTTTTTGGTGGCCT
GTTTTGAAATGGAGGGCGAAGGGGCAATGGGGTAGATGGAAAGGGAGGGA
GAGAGGCGAGACGGGAGGAGGAAGTACTGTGTGTTGGTGAAAACACAGGG
GTCGCAAAAACCAAGCTGGCTAGTTTGTGTTGATGCTGATGACATTATAT
GGAAGGGTGACATATCCTTTCTTAACTTCACCGCCCCTGGCTCCACCGGT
GCACGTCATGTTGGTTTCTTCGTACATGTTTCCGAAAAAGAAAGGAAAGC
GGATGTGCGTGATCGATGAGAGAGTGATTTTGGTCAGCATGCGTGCGTGT
GGTGGGTGGCATCACACAAGGAAAGAAGGGTGTTCATGTAGAAGAGAGGA
TGTTTTGAAATGGAGGGCGAAGGGGCAATGGGGTAGATGGAAAGGGAGGG
AGAGAGGCGGGAAGAGCGAGGGAAGAGGGGAGCGGGAAAGAAGTAAAAAC
AGCAATGACAACAATCAATGGAGAAACATGATTGCTATTTGACTCCTCAC
TCTCCCGATCTTATGCTCGAACAATTGTGAACGAGAATACTTGATGGGAC
GTCAATGCAAAGCGATGACAAGCAAAATTCTTTTTGAACGATCCTTCTCA
GAACTCAGTTGCCTTTCATAACGGACAACTTGAAAGCAAGCAAGCCCCCC
AAACACGCAGGGAAATCGCCGTACAACCTAATGCGTTCACCCATGCACCT
GACACCCTCACCACTATCACAGAACATAGCACAGGCAGGCATAAGTCGCC
TGTTGTTGTCTGCCCCAACAAGGGGCCA

Coding sequence (CDS) from alignment at scaffold_5:878072..881849+

>mRNA_2665 ID=mRNA_2665|Name=jgi.p|Nanoce1779_2|581112|organism=Nannochloropsis oceanica|type=CDS|length=1470bp|location=Sequence derived from alignment at scaffold_5:878072..881849+ (Nannochloropsis oceanica)
ATGTTCCGCAAGCTTGCGCTGGCCCTCCTGTGCTCCTCCGCCGTCGCCTT
CCAGGTGCCGGCCCCCCTCACCCGAGGCTCGGTGCGCCTTCATGCCGAAG
GCAAGCCCGCCGCTCCCCCTGCCGCCGCTCCCCCTGCCGCTGCTCCCGCT
GCTGCGGCTCCCGCTGCTGCCGCCCCAGCTGCCGCCGCTGTCAAGCCCCC
TCCTCCCCCACCCCCCCCTAAGGTCTTCTCCAAGTCGGTGCCTTTCCTGT
TGAAGCCTGCGGGTCTGGACGGGATGGTCGGCGACGTCGGCTTTGATCCC
CTAGGGTTCGCGACCTTCATCGACATCCGATGGCTGCGAGAGGCTGAGCT
GAAGAACGGCCGAGTGGCCATGCTCGCCTTCCTGGGCTTTATCGTCCAAG
AGTTTATCCGCCTCCCTGGTGACCTCTACTCGGAGCCCAACGGCGTCAAG
GCGTTCTTCCAAGTCGGACCCCAGCCGCTTCTGCAAATCTTCCTGTTCTG
CGGTTTTCTTGAGTTTAATATGCACAAGGGTAAGCTGACTCAAGTCGACA
TGTTTGAGGACGGCAAGCGCGAGCCCGGCAACTTTGGGTTCGATCCGCTT
GGATTTGGCAAGGACCCTGCGAAGCGCGAGAGGTATGCACTTGCTGAGCT
GAAGAACGGCCGGTTGGCAATGATTGCGATCGGCGGCCTGGTGCACCATG
CGTTGGTGACAGGTCATGCCACGTTTAGTAGCTAAATGTTCCGCAAGCTT
GCGCTGGCCCTCCTGTGCTCCTCCGCCGTCGCCTTCCAGGTGCCGGCCCC
CCTCACCCGAGGCTCGGTGCGCCTTCATGCCGAAGGCAAGCCCGCCGCTC
CCCCTGCCGCCGCTCCCCCTGCCGCTGCTCCCGCTGCTGCGGCTCCCGCT
GCTGCCGCCCCAGCTGCCGCCGCTGTCAAGCCCCCTCCTCCCCCACCCCC
CCCTAAGGTCTTCTCCAAGTCGGTGCCTTTCCTGTTGAAGCCTGCGGGTC
TGGACGGGATGGTCGGCGACGTCGGCTTTGATCCCCTAGGGTTCGCGACC
TTCATCGACATCCGATGGCTGCGAGAGGCTGAGCTGAAGAACGGCCGAGT
GGCCATGCTCGCCTTCCTGGGCTTTATCGTCCAAGAGTTTATCCGCCTCC
CTGGTGACCTCTACTCGGAGCCCAACGGCGTCAAGGCGTTCTTCCAAGTC
GGACCCCAGCCGCTTCTGCAAATCTTCCTGTTCTGCGGTTTTCTTGAGTT
TAATATGCACAAGGGTAAGCTGACTCAAGTCGACATGTTTGAGGACGGCA
AGCGCGAGCCCGGCAACTTTGGGTTCGATCCGCTTGGATTTGGCAAGGAC
CCTGCGAAGCGCGAGAGGTATGCACTTGCTGAGCTGAAGAACGGCCGGTT
GGCAATGATTGCGATCGGCGGCCTGGTGCACCATGCGTTGGTGACAGGTC
ATGCCACGTTTAGTAGCTAA

Synonyms

Publications