jgi.p|Nanoce1779_2|581098, mRNA_2661 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581098
Unique NamemRNA_2661
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1073
Alignment locationscaffold_5:872406..873478 +

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Properties
Property NameValue
TranscriptId581184
TrackFilteredModels2
ProteinId581098
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:872406..873478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581098gene_2661Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581098mRNA_2661-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2661CDS_2661Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2661 ID=mRNA_2661|Name=jgi.p|Nanoce1779_2|581098|organism=Nannochloropsis oceanica|type=mRNA|length=1073bp
CACATTCACAGGTCCGTAGACATTTACCGAGCTGGTGGTTGCTGGGGGAG
CAGAGGCCGGAGGAGGGGGAGGAGGGGGGGGAGGAATGGACGGTCTCCCA
CTGGATATTAAGGCCATACCTTGCGGGGATCGCGCACCAGGATAGTGCTG
CTGCTGCGGTTGCTGCACGTGTGGTGGAGGGGAAGGATATCGACCCCCAC
CTTGCACAGAATACGGACTAGGTAGCTCCACACCAACAAAACCTTGGTTT
TCCATCCAATCCCTTCCTTCCTCCCTCCCCCCTTCTCCTCGCGTCGTCAC
CGCTAACACCGAAGCAGCAGCTGCCTGCTGTTGTTGTGCTGCCATGTGCT
CCACCCAGAACGACTCCAGTTGGCTCTCCACTTCCTGCAGGTACAAGGGA
TCCTGGTGCAAATCCGACGCACACGACGCCCCTAGATCAATTGCCTCCTC
CGAACCTCCCTCCTCCAGCTCTACCCCTGTCTCCATAAGCTCTCCTATCG
CTACTTCTTCCTCCTGCTCAAAGGCTCCTCCATCCTTCTCTTCTTTCTCT
TGTGCGTTCCCAACCTCCGACATAATTAACTCTCCTTCCTCTCCCCCCGC
AGTATGCGTTTCCCCTCTCTCCTGCTCCTCCTCCCCTCCCTCCCCTCCTC
TTTCCCCTCCCTCTTCACCCGTCTGGGGTTCGCCGGCGAAATTTTCGTGC
CGTTTTTGCTGCTCCAAGTACTCCACACCTCCCTCTTCCTTGAATCTTCG
CTGCTCTTTTTCTGCTCCTGCGTCTCCTCTGTCTCTCTCTCCATCATCTC
GGTCGTCTGCTTTCACGCTAGCTTCTCTTTCTCGCTCATCTTGCTCTTGT
TCTTCTTCTTCTTGTGTTGTGCCGCCGGCTTGCCCCTGAAGCAGTAGGGA
GGGATGGCGGGAGGGAAGAAGGGAGGCAGGCAATAAAGTAGGTGGGTACG
TACACAGACAAGACTTGCCCAACAGAATGAGTAATATCCAATGAATACGA
ACGATTATAGACACATTTAAACCAATAAGCGAGAGGAATGCAACAAAACA
TACATTCCCTTTCCCTTCATCCC
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protein sequence of jgi.p|Nanoce1779_2|581098

>mRNA_2661-protein ID=mRNA_2661-protein|Name=jgi.p|Nanoce1779_2|581098|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MCSTQNDSSWLSTSCRYKGSWCKSDAHDAPRSIASSEPPSSSSTPVSISS
PIATSSSCSKAPPSFSSFSCAFPTSDIINSPSSPPAVCVSPLSCSSSPPS
PPLSPPSSPVWGSPAKFSCRFCCSKYSTPPSSLNLRCSFSAPASPLSLSP
SSRSSAFTLASLSRSSCSCSSSSCVVPPACP*
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mRNA from alignment at scaffold_5:872406..873478+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2661 ID=mRNA_2661|Name=jgi.p|Nanoce1779_2|581098|organism=Nannochloropsis oceanica|type=mRNA|length=1073bp|location=Sequence derived from alignment at scaffold_5:872406..873478+ (Nannochloropsis oceanica)
CACATTCACAGGTCCGTAGACATTTACCGAGCTGGTGGTTGCTGGGGGAG
CAGAGGCCGGAGGAGGGGGAGGAGGGGGGGGAGGAATGGACGGTCTCCCA
CTGGATATTAAGGCCATACCTTGCGGGGATCGCGCACCAGGATAGTGCTG
CTGCTGCGGTTGCTGCACGTGTGGTGGAGGGGAAGGATATCGACCCCCAC
CTTGCACAGAATACGGACTAGGTAGCTCCACACCAACAAAACCTTGGTTT
TCCATCCAATCCCTTCCTTCCTCCCTCCCCCCTTCTCCTCGCGTCGTCAC
CGCTAACACCGAAGCAGCAGCTGCCTGCTGTTGTTGTGCTGCCATGTGCT
CCACCCAGAACGACTCCAGTTGGCTCTCCACTTCCTGCAGGTACAAGGGA
TCCTGGTGCAAATCCGACGCACACGACGCCCCTAGATCAATTGCCTCCTC
CGAACCTCCCTCCTCCAGCTCTACCCCTGTCTCCATAAGCTCTCCTATCG
CTACTTCTTCCTCCTGCTCAAAGGCTCCTCCATCCTTCTCTTCTTTCTCT
TGTGCGTTCCCAACCTCCGACATAATTAACTCTCCTTCCTCTCCCCCCGC
AGTATGCGTTTCCCCTCTCTCCTGCTCCTCCTCCCCTCCCTCCCCTCCTC
TTTCCCCTCCCTCTTCACCCGTCTGGGGTTCGCCGGCGAAATTTTCGTGC
CGTTTTTGCTGCTCCAAGTACTCCACACCTCCCTCTTCCTTGAATCTTCG
CTGCTCTTTTTCTGCTCCTGCGTCTCCTCTGTCTCTCTCTCCATCATCTC
GGTCGTCTGCTTTCACGCTAGCTTCTCTTTCTCGCTCATCTTGCTCTTGT
TCTTCTTCTTCTTGTGTTGTGCCGCCGGCTTGCCCCTGAAGCAGTAGGGA
GGGATGGCGGGAGGGAAGAAGGGAGGCAGGCAATAAAGTAGGTGGGTACG
TACACAGACAAGACTTGCCCAACAGAATGAGTAATATCCAATGAATACGA
ACGATTATAGACACATTTAAACCAATAAGCGAGAGGAATGCAACAAAACA
TACATTCCCTTTCCCTTCATCCC
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Coding sequence (CDS) from alignment at scaffold_5:872406..873478+

>mRNA_2661 ID=mRNA_2661|Name=jgi.p|Nanoce1779_2|581098|organism=Nannochloropsis oceanica|type=CDS|length=546bp|location=Sequence derived from alignment at scaffold_5:872406..873478+ (Nannochloropsis oceanica)
ATGTGCTCCACCCAGAACGACTCCAGTTGGCTCTCCACTTCCTGCAGGTA
CAAGGGATCCTGGTGCAAATCCGACGCACACGACGCCCCTAGATCAATTG
CCTCCTCCGAACCTCCCTCCTCCAGCTCTACCCCTGTCTCCATAAGCTCT
CCTATCGCTACTTCTTCCTCCTGCTCAAAGGCTCCTCCATCCTTCTCTTC
TTTCTCTTGTGCGTTCCCAACCTCCGACATAATTAACTCTCCTTCCTCTC
CCCCCGCAGTATGCGTTTCCCCTCTCTCCTGCTCCTCCTCCCCTCCCTCC
CCTCCTCTTTCCCCTCCCTCTTCACCCGTCTGGGGTTCGCCGGCGAAATT
TTCGTGCCGTTTTTGCTGCTCCAAGTACTCCACACCTCCCTCTTCCTTGA
ATCTTCGCTGCTCTTTTTCTGCTCCTGCGTCTCCTCTGTCTCTCTCTCCA
TCATCTCGGTCGTCTGCTTTCACGCTAGCTTCTCTTTCTCGCTCATCTTG
CTCTTGTTCTTCTTCTTCTTGTGTTGTGCCGCCGGCTTGCCCCTGA
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Synonyms
Publications