jgi.p|Nanoce1779_2|581096, mRNA_2660 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581096
Unique Name	mRNA_2660
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2404
Alignment location	scaffold_5:869619..872022 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581182
Track	FilteredModels2
ProteinId	581096

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:869619..872022 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581096	gene_2660	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581096	mRNA_2660-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2660	CDS_2660	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:869619..872022+
coding sequence from alignment at scaffold_5:869619..872022+

mRNA sequence

>mRNA_2660 ID=mRNA_2660|Name=jgi.p|Nanoce1779_2|581096|organism=Nannochloropsis oceanica|type=mRNA|length=2404bp
ACAGGTTTCCTCACGAAGCCGCCATGGAGGCCGCCATTTCTCCCCTGGCC
ATTCCCTCCCTGCCTGCCTTTCGCCATACGTCGGCAGAAGAAGGAGGTCC
TCTCAAGAGGCGGGAGTCTAAGGTGTTGCCTCACTCCCCAACCTGCACGC
AGTGCCACGCCGAGCTGCAACCATCCGTCCGTTGGCATCCAATTATTCCG
GTCCCACTTTGCGTGGGCTGCTACGTATCGGCCACACAGACCATTCACGC
CTTCTACCGACGGCACCAGCAGCAGGCCTGGTTGGACCGACAGAGCGAGA
CCAGAAGTCAGTGTACTGGACGTCCAGAGTCCGCGGCCACTACTTCTGCT
GTTACTGCTGCTGGTACTGCCAGCGTCTGCTCGGAAGGTCCGACTATTAG
CAACGAGAGAAGTACCTCCACTTCCACCACCACCAGCAGCAACTCTCAAG
CGCCCATTACTGTCTGTATCTGGTGTCTACGCCTCGTCCAGGACGTGGAA
GCCGGTTCTAGCGTACTCCGCTGCGGGCAACAATCCTCGCCCAAACACCC
GTCGCATGTCGTCTTCTGCCAAACATGCCTGGGCTCATATTTCAACGCCC
CGACCGTCGAACATTGGTCTATGCAAAGCAAGGAAGGAGTTTGGACGTGT
TTGATTTGTGATAAAACACCATTGTTGGAGCTGGCTTGGGAGGAAGGGTG
GGGCTTGCCACATTACCCCCATGACTTGCGTTTGTCAGCTGAGATTCAAG
ACGTATTGGCCAAGGCGTTTGCTGTGCCTCACCCACGGAAACGGGAGATT
ACAATGATGAGCGTTGCGCATTCTGCCGATGAAAATGGGAGTGAAACGAC
AAGCGAAGCGTCGCGCAAACGCTTGCGGCTAGCAAAGTCGCCCACGACCA
ACTCGCCTAACTTGCCACCCTTCCTCGTGCCGCTCCCCGCCCAGCAGCAG
GAGCAGCCGCAACAGCAGCAGCAGTATCACCACGCTCAATCCCAACCCCA
CCGGCCACCACAGCGGCAGCCGCAGGAAGAGGAGAATAAGGAGCACCGCC
AGAAAGGCTCACCATTTGCCTGGCAGTCTTTTTTAGCCGAATGCGAGGGC
GACGCGACTCTCGTCGTCTTGGTCGAGCAGACGCAACAAGCCCTCTCCCT
CATCACTCGGCTCTGGCGGGAGGCAGCCGTGCAGGTCGCGGCTCGTGAAG
ATATACTGGACATGGGGCCAGGATTAACACGAAACATGATGTTGATGCAG
CAGGGACGCGTGGCGGAAGGCGAAGGGCTGACCCGTCGGCCCACTATCGA
CTACATGCTGAGCGGCACAGATCGTCCTGAAATCGGTGAAACGGATAAAC
GGAGCAATAGTAGCAGTCGAAGCGGTGGGAGTAGCAGTAGTTTGGATGGT
AGTGGTGCGGGTGGTCATGAGCTGGAGGTCCAACCTGCGACAGCGAGGAT
GAATATGGCCGAGAAAGATGCGCAGCAGGCAATTCGCAAGTCCTTAGTCG
AGCTTCGGGTGTTGTTGCAACAAATGCGGCTGATGAGCGACCAGCGCCAA
CAAGGGAGTGCTGTTGAAGCCGTCAGGCGATTCCAGCAGGAGCACGAGCA
GCAACAGCAGCTGAGAGAGGGTGCCGAAGCCTCGTCCTCCACCTCTTCCT
CCGACTTGTTTGGTCTAGACTATGAGATGAAGCGCATGGAGCAACTGCAG
GCCTGGCTCTTGTCGTCGCAGGGTGTACTAAGGTGCCTTCATAACCAAGT
TCTCGAGGTACTTAACCGGGCGCAGCTCCAACCTTCCCGCTCCTCCTCTC
CACAGACGTCAGCAGAGACAGGGCCAACAGGGTCGGAGATATTCCCGGCC
GGGAATGAGAAGAAGGCGATTAGCACGGAAATGGAGGAGCATGTAAGTGG
AAAGAAGAAGCGCAACAAGCATGTGAGGCAGGAGGGAGATTACGTGAACG
ATGTGGAGGAACATTCGGATTTCGAGCGTCGGCTACGGGCATCAGGCGAG
TCGTTGAAAGAGTTAGAGAAGGATTTAAGTCTGCGGTTGGAGGATGTGGG
ATATGCTGTCTCGATTTTGTGTCAAATGAAGGGGAAAGCTGAAGCGAGGG
AGATGGGGCAGCAGGAAGAGACGCAGCGGCAGACACACGGCAGGGTAGTG
GAGGGGCAGGAGCAAGAGCAGGAGAAAGGGAGCAAGAGCTAGATTCTGGG
CAAGAATTGAAGGTGAGTCAAATCAAAAAAGAGGAAATGGGAGATGTATG
ACCGGACAGGCCAGGGGGGGCCTGAAAAATGACTTGCAAGGTCCCCTCTT
TAACAGGCCTAAAAACATTCGTCCATGGAAAATACATGAAAAATGCACGG
GCTTCTAGCAGGAGAGAGTTCAAAATGTGAAGGAAAGGAAATGTGATGTG
AAAA

protein sequence of jgi.p|Nanoce1779_2|581096

>mRNA_2660-protein ID=mRNA_2660-protein|Name=jgi.p|Nanoce1779_2|581096|organism=Nannochloropsis oceanica|type=polypeptide|length=723bp
MEAAISPLAIPSLPAFRHTSAEEGGPLKRRESKVLPHSPTCTQCHAELQP
SVRWHPIIPVPLCVGCYVSATQTIHAFYRRHQQQAWLDRQSETRSQCTGR
PESAATTSAVTAAGTASVCSEGPTISNERSTSTSTTTSSNSQAPITVCIW
CLRLVQDVEAGSSVLRCGQQSSPKHPSHVVFCQTCLGSYFNAPTVEHWSM
QSKEGVWTCLICDKTPLLELAWEEGWGLPHYPHDLRLSAEIQDVLAKAFA
VPHPRKREITMMSVAHSADENGSETTSEASRKRLRLAKSPTTNSPNLPPF
LVPLPAQQQEQPQQQQQYHHAQSQPHRPPQRQPQEEENKEHRQKGSPFAW
QSFLAECEGDATLVVLVEQTQQALSLITRLWREAAVQVAAREDILDMGPG
LTRNMMLMQQGRVAEGEGLTRRPTIDYMLSGTDRPEIGETDKRSNSSSRS
GGSSSSLDGSGAGGHELEVQPATARMNMAEKDAQQAIRKSLVELRVLLQQ
MRLMSDQRQQGSAVEAVRRFQQEHEQQQQLREGAEASSSTSSSDLFGLDY
EMKRMEQLQAWLLSSQGVLRCLHNQVLEVLNRAQLQPSRSSSPQTSAETG
PTGSEIFPAGNEKKAISTEMEEHVSGKKKRNKHVRQEGDYVNDVEEHSDF
ERRLRASGESLKELEKDLSLRLEDVGYAVSILCQMKGKAEAREMGQQEET
QRQTHGRVVEGQEQEQEKGSKS*

mRNA from alignment at scaffold_5:869619..872022+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2660 ID=mRNA_2660|Name=jgi.p|Nanoce1779_2|581096|organism=Nannochloropsis oceanica|type=mRNA|length=2404bp|location=Sequence derived from alignment at scaffold_5:869619..872022+ (Nannochloropsis oceanica)
ACAGGTTTCCTCACGAAGCCGCCATGGAGGCCGCCATTTCTCCCCTGGCC
ATTCCCTCCCTGCCTGCCTTTCGCCATACGTCGGCAGAAGAAGGAGGTCC
TCTCAAGAGGCGGGAGTCTAAGGTGTTGCCTCACTCCCCAACCTGCACGC
AGTGCCACGCCGAGCTGCAACCATCCGTCCGTTGGCATCCAATTATTCCG
GTCCCACTTTGCGTGGGCTGCTACGTATCGGCCACACAGACCATTCACGC
CTTCTACCGACGGCACCAGCAGCAGGCCTGGTTGGACCGACAGAGCGAGA
CCAGAAGTCAGTGTACTGGACGTCCAGAGTCCGCGGCCACTACTTCTGCT
GTTACTGCTGCTGGTACTGCCAGCGTCTGCTCGGAAGGTCCGACTATTAG
CAACGAGAGAAGTACCTCCACTTCCACCACCACCAGCAGCAACTCTCAAG
CGCCCATTACTGTCTGTATCTGGTGTCTACGCCTCGTCCAGGACGTGGAA
GCCGGTTCTAGCGTACTCCGCTGCGGGCAACAATCCTCGCCCAAACACCC
GTCGCATGTCGTCTTCTGCCAAACATGCCTGGGCTCATATTTCAACGCCC
CGACCGTCGAACATTGGTCTATGCAAAGCAAGGAAGGAGTTTGGACGTGT
TTGATTTGTGATAAAACACCATTGTTGGAGCTGGCTTGGGAGGAAGGGTG
GGGCTTGCCACATTACCCCCATGACTTGCGTTTGTCAGCTGAGATTCAAG
ACGTATTGGCCAAGGCGTTTGCTGTGCCTCACCCACGGAAACGGGAGATT
ACAATGATGAGCGTTGCGCATTCTGCCGATGAAAATGGGAGTGAAACGAC
AAGCGAAGCGTCGCGCAAACGCTTGCGGCTAGCAAAGTCGCCCACGACCA
ACTCGCCTAACTTGCCACCCTTCCTCGTGCCGCTCCCCGCCCAGCAGCAG
GAGCAGCCGCAACAGCAGCAGCAGTATCACCACGCTCAATCCCAACCCCA
CCGGCCACCACAGCGGCAGCCGCAGGAAGAGGAGAATAAGGAGCACCGCC
AGAAAGGCTCACCATTTGCCTGGCAGTCTTTTTTAGCCGAATGCGAGGGC
GACGCGACTCTCGTCGTCTTGGTCGAGCAGACGCAACAAGCCCTCTCCCT
CATCACTCGGCTCTGGCGGGAGGCAGCCGTGCAGGTCGCGGCTCGTGAAG
ATATACTGGACATGGGGCCAGGATTAACACGAAACATGATGTTGATGCAG
CAGGGACGCGTGGCGGAAGGCGAAGGGCTGACCCGTCGGCCCACTATCGA
CTACATGCTGAGCGGCACAGATCGTCCTGAAATCGGTGAAACGGATAAAC
GGAGCAATAGTAGCAGTCGAAGCGGTGGGAGTAGCAGTAGTTTGGATGGT
AGTGGTGCGGGTGGTCATGAGCTGGAGGTCCAACCTGCGACAGCGAGGAT
GAATATGGCCGAGAAAGATGCGCAGCAGGCAATTCGCAAGTCCTTAGTCG
AGCTTCGGGTGTTGTTGCAACAAATGCGGCTGATGAGCGACCAGCGCCAA
CAAGGGAGTGCTGTTGAAGCCGTCAGGCGATTCCAGCAGGAGCACGAGCA
GCAACAGCAGCTGAGAGAGGGTGCCGAAGCCTCGTCCTCCACCTCTTCCT
CCGACTTGTTTGGTCTAGACTATGAGATGAAGCGCATGGAGCAACTGCAG
GCCTGGCTCTTGTCGTCGCAGGGTGTACTAAGGTGCCTTCATAACCAAGT
TCTCGAGGTACTTAACCGGGCGCAGCTCCAACCTTCCCGCTCCTCCTCTC
CACAGACGTCAGCAGAGACAGGGCCAACAGGGTCGGAGATATTCCCGGCC
GGGAATGAGAAGAAGGCGATTAGCACGGAAATGGAGGAGCATGTAAGTGG
AAAGAAGAAGCGCAACAAGCATGTGAGGCAGGAGGGAGATTACGTGAACG
ATGTGGAGGAACATTCGGATTTCGAGCGTCGGCTACGGGCATCAGGCGAG
TCGTTGAAAGAGTTAGAGAAGGATTTAAGTCTGCGGTTGGAGGATGTGGG
ATATGCTGTCTCGATTTTGTGTCAAATGAAGGGGAAAGCTGAAGCGAGGG
AGATGGGGCAGCAGGAAGAGACGCAGCGGCAGACACACGGCAGGGTAGTG
GAGGGGCAGGAGCAAGAGCAGGAGAAAGGGAGCAAGAGCTAGATTCTGGG
CAAGAATTGAAGGTGAGTCAAATCAAAAAAGAGGAAATGGGAGATGTATG
ACCGGACAGGCCAGGGGGGGCCTGAAAAATGACTTGCAAGGTCCCCTCTT
TAACAGGCCTAAAAACATTCGTCCATGGAAAATACATGAAAAATGCACGG
GCTTCTAGCAGGAGAGAGTTCAAAATGTGAAGGAAAGGAAATGTGATGTG
AAAA

Coding sequence (CDS) from alignment at scaffold_5:869619..872022+

>mRNA_2660 ID=mRNA_2660|Name=jgi.p|Nanoce1779_2|581096|organism=Nannochloropsis oceanica|type=CDS|length=2169bp|location=Sequence derived from alignment at scaffold_5:869619..872022+ (Nannochloropsis oceanica)
ATGGAGGCCGCCATTTCTCCCCTGGCCATTCCCTCCCTGCCTGCCTTTCG
CCATACGTCGGCAGAAGAAGGAGGTCCTCTCAAGAGGCGGGAGTCTAAGG
TGTTGCCTCACTCCCCAACCTGCACGCAGTGCCACGCCGAGCTGCAACCA
TCCGTCCGTTGGCATCCAATTATTCCGGTCCCACTTTGCGTGGGCTGCTA
CGTATCGGCCACACAGACCATTCACGCCTTCTACCGACGGCACCAGCAGC
AGGCCTGGTTGGACCGACAGAGCGAGACCAGAAGTCAGTGTACTGGACGT
CCAGAGTCCGCGGCCACTACTTCTGCTGTTACTGCTGCTGGTACTGCCAG
CGTCTGCTCGGAAGGTCCGACTATTAGCAACGAGAGAAGTACCTCCACTT
CCACCACCACCAGCAGCAACTCTCAAGCGCCCATTACTGTCTGTATCTGG
TGTCTACGCCTCGTCCAGGACGTGGAAGCCGGTTCTAGCGTACTCCGCTG
CGGGCAACAATCCTCGCCCAAACACCCGTCGCATGTCGTCTTCTGCCAAA
CATGCCTGGGCTCATATTTCAACGCCCCGACCGTCGAACATTGGTCTATG
CAAAGCAAGGAAGGAGTTTGGACGTGTTTGATTTGTGATAAAACACCATT
GTTGGAGCTGGCTTGGGAGGAAGGGTGGGGCTTGCCACATTACCCCCATG
ACTTGCGTTTGTCAGCTGAGATTCAAGACGTATTGGCCAAGGCGTTTGCT
GTGCCTCACCCACGGAAACGGGAGATTACAATGATGAGCGTTGCGCATTC
TGCCGATGAAAATGGGAGTGAAACGACAAGCGAAGCGTCGCGCAAACGCT
TGCGGCTAGCAAAGTCGCCCACGACCAACTCGCCTAACTTGCCACCCTTC
CTCGTGCCGCTCCCCGCCCAGCAGCAGGAGCAGCCGCAACAGCAGCAGCA
GTATCACCACGCTCAATCCCAACCCCACCGGCCACCACAGCGGCAGCCGC
AGGAAGAGGAGAATAAGGAGCACCGCCAGAAAGGCTCACCATTTGCCTGG
CAGTCTTTTTTAGCCGAATGCGAGGGCGACGCGACTCTCGTCGTCTTGGT
CGAGCAGACGCAACAAGCCCTCTCCCTCATCACTCGGCTCTGGCGGGAGG
CAGCCGTGCAGGTCGCGGCTCGTGAAGATATACTGGACATGGGGCCAGGA
TTAACACGAAACATGATGTTGATGCAGCAGGGACGCGTGGCGGAAGGCGA
AGGGCTGACCCGTCGGCCCACTATCGACTACATGCTGAGCGGCACAGATC
GTCCTGAAATCGGTGAAACGGATAAACGGAGCAATAGTAGCAGTCGAAGC
GGTGGGAGTAGCAGTAGTTTGGATGGTAGTGGTGCGGGTGGTCATGAGCT
GGAGGTCCAACCTGCGACAGCGAGGATGAATATGGCCGAGAAAGATGCGC
AGCAGGCAATTCGCAAGTCCTTAGTCGAGCTTCGGGTGTTGTTGCAACAA
ATGCGGCTGATGAGCGACCAGCGCCAACAAGGGAGTGCTGTTGAAGCCGT
CAGGCGATTCCAGCAGGAGCACGAGCAGCAACAGCAGCTGAGAGAGGGTG
CCGAAGCCTCGTCCTCCACCTCTTCCTCCGACTTGTTTGGTCTAGACTAT
GAGATGAAGCGCATGGAGCAACTGCAGGCCTGGCTCTTGTCGTCGCAGGG
TGTACTAAGGTGCCTTCATAACCAAGTTCTCGAGGTACTTAACCGGGCGC
AGCTCCAACCTTCCCGCTCCTCCTCTCCACAGACGTCAGCAGAGACAGGG
CCAACAGGGTCGGAGATATTCCCGGCCGGGAATGAGAAGAAGGCGATTAG
CACGGAAATGGAGGAGCATGTAAGTGGAAAGAAGAAGCGCAACAAGCATG
TGAGGCAGGAGGGAGATTACGTGAACGATGTGGAGGAACATTCGGATTTC
GAGCGTCGGCTACGGGCATCAGGCGAGTCGTTGAAAGAGTTAGAGAAGGA
TTTAAGTCTGCGGTTGGAGGATGTGGGATATGCTGTCTCGATTTTGTGTC
AAATGAAGGGGAAAGCTGAAGCGAGGGAGATGGGGCAGCAGGAAGAGACG
CAGCGGCAGACACACGGCAGGGTAGTGGAGGGGCAGGAGCAAGAGCAGGA
GAAAGGGAGCAAGAGCTAG

Synonyms

Publications