jgi.p|Nanoce1779_2|581088, mRNA_2658 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581088
Unique NamemRNA_2658
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length668
Alignment locationscaffold_5:864762..865429 -

Link to JBrowse

Properties
Property NameValue
TranscriptId581174
TrackFilteredModels2
ProteinId581088
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:864762..865429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581088gene_2658Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581088mRNA_2658-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2658CDS_2658Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2658 ID=mRNA_2658|Name=jgi.p|Nanoce1779_2|581088|organism=Nannochloropsis oceanica|type=mRNA|length=668bp
ACAGGCCAACGCAGATCGGCTTTTCCCCTGCTCTTCAGAAATGCGGAGGA
TATTTTCATCGAACGGCCGTAGCTGCACCGCAGCGCGTTTGCTGTTGCTG
TCGCTTCTGGCCGTGGAGTTGACGCATGCCTTTGTGGGTAAGGTTTCCTT
GGGCGAGGGCGACATTGGCAGCAGCCGGAGCAGCAGCTATGCCGGCAGAA
GACAGGAAACATGGCGCAATGCGCCCTTGTCCGCGGCGGCTGCGGCTGCC
ACCTCAGGTAAGGGAGGGCGATCCTCTTCTATGTTTGTGGGCAGGGAGTG
TGTGTCGAGTGCACGTAATCCTCCGCATATTAGTGATGTAGTCGATTAGG
CCTTGCTGTGTGGGAAGAATACCGCTGTTCGATCGGTGTTGCCCTGGTTG
TACTCGATTGTGTCTTTCTCCAACAGACAATTTCTTTCAGTGTAAACTAG
GAATGCATATTCTTGTACACGAGAGCATTAAGTGCATAGTTTTTTCTTAA
AAACTTGTTTCGCAATCATCTCTCTCTGCCCCTCCTTGACTGTTCCTCTC
TCCCCCTAACAGCCCGAGAAACCAGCACAACAACCCTCCTCAGCACCAGC
ACCAGCACCACCGCCACCAGAAGTAGCAGCAGCAGCAGCAGCAGCAGCAG
CGGCAGCAGCAGCAGCAG
back to top

protein sequence of jgi.p|Nanoce1779_2|581088

>mRNA_2658-protein ID=mRNA_2658-protein|Name=jgi.p|Nanoce1779_2|581088|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
MRRIFSSNGRSCTAARLLLLSLLAVELTHAFVGKVSLGEGDIGSSRSSSY
AGRRQETWRNAPLSAAAAAATSGKGGRSSSMFVGRECVSSARNPPHISDV
VD*
back to top

mRNA from alignment at scaffold_5:864762..865429-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2658 ID=mRNA_2658|Name=jgi.p|Nanoce1779_2|581088|organism=Nannochloropsis oceanica|type=mRNA|length=668bp|location=Sequence derived from alignment at scaffold_5:864762..865429- (Nannochloropsis oceanica)
ACAGGCCAACGCAGATCGGCTTTTCCCCTGCTCTTCAGAAATGCGGAGGA
TATTTTCATCGAACGGCCGTAGCTGCACCGCAGCGCGTTTGCTGTTGCTG
TCGCTTCTGGCCGTGGAGTTGACGCATGCCTTTGTGGGTAAGGTTTCCTT
GGGCGAGGGCGACATTGGCAGCAGCCGGAGCAGCAGCTATGCCGGCAGAA
GACAGGAAACATGGCGCAATGCGCCCTTGTCCGCGGCGGCTGCGGCTGCC
ACCTCAGGTAAGGGAGGGCGATCCTCTTCTATGTTTGTGGGCAGGGAGTG
TGTGTCGAGTGCACGTAATCCTCCGCATATTAGTGATGTAGTCGATTAGG
CCTTGCTGTGTGGGAAGAATACCGCTGTTCGATCGGTGTTGCCCTGGTTG
TACTCGATTGTGTCTTTCTCCAACAGACAATTTCTTTCAGTGTAAACTAG
GAATGCATATTCTTGTACACGAGAGCATTAAGTGCATAGTTTTTTCTTAA
AAACTTGTTTCGCAATCATCTCTCTCTGCCCCTCCTTGACTGTTCCTCTC
TCCCCCTAACAGCCCGAGAAACCAGCACAACAACCCTCCTCAGCACCAGC
ACCAGCACCACCGCCACCAGAAGTAGCAGCAGCAGCAGCAGCAGCAGCAG
CGGCAGCAGCAGCAGCAG
back to top

Coding sequence (CDS) from alignment at scaffold_5:864762..865429-

>mRNA_2658 ID=mRNA_2658|Name=jgi.p|Nanoce1779_2|581088|organism=Nannochloropsis oceanica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_5:864762..865429- (Nannochloropsis oceanica)
ATGCGGAGGATATTTTCATCGAACGGCCGTAGCTGCACCGCAGCGCGTTT
GCTGTTGCTGTCGCTTCTGGCCGTGGAGTTGACGCATGCCTTTGTGGGTA
AGGTTTCCTTGGGCGAGGGCGACATTGGCAGCAGCCGGAGCAGCAGCTAT
GCCGGCAGAAGACAGGAAACATGGCGCAATGCGCCCTTGTCCGCGGCGGC
TGCGGCTGCCACCTCAGGTAAGGGAGGGCGATCCTCTTCTATGTTTGTGG
GCAGGGAGTGTGTGTCGAGTGCACGTAATCCTCCGCATATTAGTGATGTA
GTCGATTAG
back to top
Synonyms
Publications