jgi.p|Nanoce1779_2|581086, mRNA_2657 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581086
Unique NamemRNA_2657
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1584
Alignment locationscaffold_5:863194..864777 -

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Properties
Property NameValue
TranscriptId581172
TrackFilteredModels2
ProteinId581086
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:863194..864777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581086gene_2657Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581086mRNA_2657-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2657CDS_2657Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2657 ID=mRNA_2657|Name=jgi.p|Nanoce1779_2|581086|organism=Nannochloropsis oceanica|type=mRNA|length=1584bp
GCAGCAGCAGCAGCAGCAGCATCACACTGCCTACTTCTACCCTCGGCGAT
AATCTTAAAGCTGATTTTCCTGCGTTGCATCAGGATGCCTACCCAGGCAA
ACCCCTCGTCTATCTCGACTCGGCCGCCACCTCCCAAAAACCCAAACAGG
TGCTGAATGCCATGTCCGAATATTATGAACACAGCAACGCCAATGTCCAT
CGCGGTGCCCACGCCCTTTCCATCCGCGCAACAGAAGCTTACGAAGCCAC
AAGGGACAAGGTCCAAAACTTCATTCACGCCAGCACACGCGAAGAGATCG
TCTTTACGCGCGGCGCGACTGAGGCCATTAACCTTGTGGCCAACACTTGG
GGAATCCAGAATTTGAAAGCAGGAGATGAAATTTTATTGACAGTGATGGA
GCACCATTCTAACCTGGTACCCTGGCAGTTGATCGCCAAAAAGACGGGGG
CTGTGATAAAGTTTGTGGGTTTGGATGAGGAGGAGGGATTGGACCTGCCT
CAATTTCACTCCTTGCTTTCAAGCAAGACCAAGCTGGTTGCCTTCCCTCA
CGTTAGTAACACGCTCGGATGTATCTTGCCAGTGGCAGAGATGGCGGCTG
CTGCACATGCTGTAGGTGCTCTTGTCCTGGTGGATGCCTGCCAGAGCATT
CCCCATATGAAGGTAGATGTGCAGGCGCTCGATGTCGATTTTCTCGCAGC
GAGCAGCCACAAGATGTGTGGCCCGACAGGGGCGGGATTCTTGTACGGGA
AATTGGGAGTGTTGAAGCAGATGCCACCGTGGCATGGGGGAGGAGAAATG
ATTGATGAAGTCTTCTTCGAGTACTCGACCTTTGCAGAGCCTCCGGCGAG
ATTCGAGGCGGGCACTCCCCCAATTGCCGAGGTCGTGGGTATGGGGGCGG
CGTGTGATTACTTGATGGAAGTGGGGATGGAAAAGGTGGAGGAGCATGAG
CATCAATTGGGAAAGTATTTGTATGAGCGGTTGAGTGAAGTGGAAGGGGT
GAGAATATATGGTCCGCCGCCGGGTAAGGAGGGGAAGGGAAGGGCGGCGT
TGGCCTCGTTTAATACGGACCAGGTGCATGCGAGTGATTTGGCGTTTTTC
TTGGACCACGAGGGAGTGGCAATTCGTTCGGGCCATCACTGCACGCAGCC
TCTGCATCGGATGCTGCACGCCAAAGGCAGCCTGAGGGCGAGCCTTTATG
TGTACAATACGAAGGGGGATATCGATGTTTTTATCGCCAGGTTGAAGGAG
ACAATGGAGTTTTTTGGAAACTTTCAGAGTGGAGGGGCGGGGGCAGCGAC
GATTTTGTAGGTTGTAGAAGAAGCAAAGATGGGGAGGAGTCTTGAGATGC
GGCAGAGAAATGTGATGAAATGATCAAGAACTATGAGAGGTGAAGAAGTA
GTAGTATGAGATTGATCGATCGATGATGGGCAGCAAGAGCAAGAGGAGAG
TACCGCTAGGTCGCACAAGGAAGAAAAGAAAAGAAATCACGCCAACGAGT
GCCGTTATCAGGCGAGTAAGCGAGCGGGGACATGTGCATGCGAATGTTCC
GTCATAATAAGTAACTGACGACGAGAATTTAAAT
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protein sequence of jgi.p|Nanoce1779_2|581086

>mRNA_2657-protein ID=mRNA_2657-protein|Name=jgi.p|Nanoce1779_2|581086|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MSEYYEHSNANVHRGAHALSIRATEAYEATRDKVQNFIHASTREEIVFTR
GATEAINLVANTWGIQNLKAGDEILLTVMEHHSNLVPWQLIAKKTGAVIK
FVGLDEEEGLDLPQFHSLLSSKTKLVAFPHVSNTLGCILPVAEMAAAAHA
VGALVLVDACQSIPHMKVDVQALDVDFLAASSHKMCGPTGAGFLYGKLGV
LKQMPPWHGGGEMIDEVFFEYSTFAEPPARFEAGTPPIAEVVGMGAACDY
LMEVGMEKVEEHEHQLGKYLYERLSEVEGVRIYGPPPGKEGKGRAALASF
NTDQVHASDLAFFLDHEGVAIRSGHHCTQPLHRMLHAKGSLRASLYVYNT
KGDIDVFIARLKETMEFFGNFQSGGAGAATIL*
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mRNA from alignment at scaffold_5:863194..864777-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2657 ID=mRNA_2657|Name=jgi.p|Nanoce1779_2|581086|organism=Nannochloropsis oceanica|type=mRNA|length=1584bp|location=Sequence derived from alignment at scaffold_5:863194..864777- (Nannochloropsis oceanica)
GCAGCAGCAGCAGCAGCAGCATCACACTGCCTACTTCTACCCTCGGCGAT
AATCTTAAAGCTGATTTTCCTGCGTTGCATCAGGATGCCTACCCAGGCAA
ACCCCTCGTCTATCTCGACTCGGCCGCCACCTCCCAAAAACCCAAACAGG
TGCTGAATGCCATGTCCGAATATTATGAACACAGCAACGCCAATGTCCAT
CGCGGTGCCCACGCCCTTTCCATCCGCGCAACAGAAGCTTACGAAGCCAC
AAGGGACAAGGTCCAAAACTTCATTCACGCCAGCACACGCGAAGAGATCG
TCTTTACGCGCGGCGCGACTGAGGCCATTAACCTTGTGGCCAACACTTGG
GGAATCCAGAATTTGAAAGCAGGAGATGAAATTTTATTGACAGTGATGGA
GCACCATTCTAACCTGGTACCCTGGCAGTTGATCGCCAAAAAGACGGGGG
CTGTGATAAAGTTTGTGGGTTTGGATGAGGAGGAGGGATTGGACCTGCCT
CAATTTCACTCCTTGCTTTCAAGCAAGACCAAGCTGGTTGCCTTCCCTCA
CGTTAGTAACACGCTCGGATGTATCTTGCCAGTGGCAGAGATGGCGGCTG
CTGCACATGCTGTAGGTGCTCTTGTCCTGGTGGATGCCTGCCAGAGCATT
CCCCATATGAAGGTAGATGTGCAGGCGCTCGATGTCGATTTTCTCGCAGC
GAGCAGCCACAAGATGTGTGGCCCGACAGGGGCGGGATTCTTGTACGGGA
AATTGGGAGTGTTGAAGCAGATGCCACCGTGGCATGGGGGAGGAGAAATG
ATTGATGAAGTCTTCTTCGAGTACTCGACCTTTGCAGAGCCTCCGGCGAG
ATTCGAGGCGGGCACTCCCCCAATTGCCGAGGTCGTGGGTATGGGGGCGG
CGTGTGATTACTTGATGGAAGTGGGGATGGAAAAGGTGGAGGAGCATGAG
CATCAATTGGGAAAGTATTTGTATGAGCGGTTGAGTGAAGTGGAAGGGGT
GAGAATATATGGTCCGCCGCCGGGTAAGGAGGGGAAGGGAAGGGCGGCGT
TGGCCTCGTTTAATACGGACCAGGTGCATGCGAGTGATTTGGCGTTTTTC
TTGGACCACGAGGGAGTGGCAATTCGTTCGGGCCATCACTGCACGCAGCC
TCTGCATCGGATGCTGCACGCCAAAGGCAGCCTGAGGGCGAGCCTTTATG
TGTACAATACGAAGGGGGATATCGATGTTTTTATCGCCAGGTTGAAGGAG
ACAATGGAGTTTTTTGGAAACTTTCAGAGTGGAGGGGCGGGGGCAGCGAC
GATTTTGTAGGTTGTAGAAGAAGCAAAGATGGGGAGGAGTCTTGAGATGC
GGCAGAGAAATGTGATGAAATGATCAAGAACTATGAGAGGTGAAGAAGTA
GTAGTATGAGATTGATCGATCGATGATGGGCAGCAAGAGCAAGAGGAGAG
TACCGCTAGGTCGCACAAGGAAGAAAAGAAAAGAAATCACGCCAACGAGT
GCCGTTATCAGGCGAGTAAGCGAGCGGGGACATGTGCATGCGAATGTTCC
GTCATAATAAGTAACTGACGACGAGAATTTAAAT
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Coding sequence (CDS) from alignment at scaffold_5:863194..864777-

>mRNA_2657 ID=mRNA_2657|Name=jgi.p|Nanoce1779_2|581086|organism=Nannochloropsis oceanica|type=CDS|length=1149bp|location=Sequence derived from alignment at scaffold_5:863194..864777- (Nannochloropsis oceanica)
ATGTCCGAATATTATGAACACAGCAACGCCAATGTCCATCGCGGTGCCCA
CGCCCTTTCCATCCGCGCAACAGAAGCTTACGAAGCCACAAGGGACAAGG
TCCAAAACTTCATTCACGCCAGCACACGCGAAGAGATCGTCTTTACGCGC
GGCGCGACTGAGGCCATTAACCTTGTGGCCAACACTTGGGGAATCCAGAA
TTTGAAAGCAGGAGATGAAATTTTATTGACAGTGATGGAGCACCATTCTA
ACCTGGTACCCTGGCAGTTGATCGCCAAAAAGACGGGGGCTGTGATAAAG
TTTGTGGGTTTGGATGAGGAGGAGGGATTGGACCTGCCTCAATTTCACTC
CTTGCTTTCAAGCAAGACCAAGCTGGTTGCCTTCCCTCACGTTAGTAACA
CGCTCGGATGTATCTTGCCAGTGGCAGAGATGGCGGCTGCTGCACATGCT
GTAGGTGCTCTTGTCCTGGTGGATGCCTGCCAGAGCATTCCCCATATGAA
GGTAGATGTGCAGGCGCTCGATGTCGATTTTCTCGCAGCGAGCAGCCACA
AGATGTGTGGCCCGACAGGGGCGGGATTCTTGTACGGGAAATTGGGAGTG
TTGAAGCAGATGCCACCGTGGCATGGGGGAGGAGAAATGATTGATGAAGT
CTTCTTCGAGTACTCGACCTTTGCAGAGCCTCCGGCGAGATTCGAGGCGG
GCACTCCCCCAATTGCCGAGGTCGTGGGTATGGGGGCGGCGTGTGATTAC
TTGATGGAAGTGGGGATGGAAAAGGTGGAGGAGCATGAGCATCAATTGGG
AAAGTATTTGTATGAGCGGTTGAGTGAAGTGGAAGGGGTGAGAATATATG
GTCCGCCGCCGGGTAAGGAGGGGAAGGGAAGGGCGGCGTTGGCCTCGTTT
AATACGGACCAGGTGCATGCGAGTGATTTGGCGTTTTTCTTGGACCACGA
GGGAGTGGCAATTCGTTCGGGCCATCACTGCACGCAGCCTCTGCATCGGA
TGCTGCACGCCAAAGGCAGCCTGAGGGCGAGCCTTTATGTGTACAATACG
AAGGGGGATATCGATGTTTTTATCGCCAGGTTGAAGGAGACAATGGAGTT
TTTTGGAAACTTTCAGAGTGGAGGGGCGGGGGCAGCGACGATTTTGTAG
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Synonyms
Publications