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Properties
| Property Name | Value |
|---|
| TranscriptId | 581170 |
| Track | FilteredModels2 |
| ProteinId | 581084 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:860816..863193 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2656 ID=mRNA_2656|Name=jgi.p|Nanoce1779_2|581084|organism=Nannochloropsis oceanica|type=mRNA|length=1479bp
ACAGCAACTCGACCACCCCCTAAAAATGTCCAACTCGCTCTTCAGTCAAC
ACACCCGCTTGTCGGAGGAGGTGTTTGCCCGCTTCATGTCCCTTCCTCAG
GGGGATGCCTACCAAGCCGAGTACATCTGGATTGGTGGCTCTGGCCAAGA
CTTGCGCTGCAAGACCCGCACACTCTATAAGGTCACGAGCAACCCCGATG
ACCTGCCCATTTGGAACTTCGATGGCTCCTCCACCGGCCAAGCTCCCGGG
GACGACTCCGAGGTACTCCTGAAGCCCCAGGCAATTTTCCCCGACCCCTT
CCGTGGCGGAAAGAACATCCTGGTCATGTGCGACTGCTACAAGCCCGACA
TGACCCCCATCAAGAACAACTCTCGTGTCCGGTGCGCGGAGGCGATGAAG
AAGGTTGAATCCCTCGTCCCCTGGTTCGGCATCGAGCAAGAGTACACCCT
GTTCGAGGCGGATGGCGTGACGCCCTTCGGCTGGCCCAAGGGAGGTTTCC
CCGGTGCCCAGGGCCCGTACTACTGCTCCATCGGGACTGAGAACGCCTAC
GGCCGCCACATCGCCGAGGCTCACTACCGCGCCTGCCTCTATGCCAATAT
TCAGATCTCCGGGATCAACGGCGAGGTGCTCCCGGGCCAGTGGGAGTATC
AGGTGGGCCCCTCCGTCGGCATTGCATCAGGTGACCAGATGTGGGTCTCT
CGTTACATCCTCCAGCGTGTCTGCGAGGCCTTTGGCGTGATCGTATCTCT
GGACCCCAAGCCCATCCCGGGTGACTGGAACGGATCGGGGTGCCATACCA
ACTTCTCAACCGAGCCCATGCGACAACCCGGGGGGTTCACCGTCATTATC
GACGCCTTGGAGAAGCTCCGTGCCCGCCACGCCGAGCACATTGCCGCCTA
CGGGGAGGGGAACGAGCGTCGTCTGACTGGAAAGCACGAGACGGCCAGCA
TGGACTCATTTTCCTATGGCGTGGCCAACCGCGGGGCATCGTGCCGGATC
CCCCGGGCGGCGGAGAAGGATGGGTGCGGCTACTTCGAGGACAGGCGTCC
GTCTTCCAACATGGACCCCTATGTCGTCACGGGCATGCTTATTGAGACGT
GCTGCTTGTAAGCTTTCTTCTCCTGTTAGGAGAGGAGGGAGGTGGATAGA
GAGGGTGTTAGAGGAGGAAAGGGGAGGACTGGAAAGAGTGTGAGCCTCGT
TTTTTAATATGGTGTGGTAGGAACAAGAGGAGAGAGTAATAAGGAAGAAG
AGGGAGCCTAAACAGCAACAGTAGATGGAAGGATATGATTGGGTCTTTCG
GCCTGCGAGTATACCTCTCCTTTCATAACCCTTCCACACGCGTACTCCGG
GGAAAGAACTGATGCGAAGATTTAAAATTTGAGACAAGAGAAATAGGGAG
GCCGAAAGAGAAAAGGTGGGTTGGCAAGAAGAAGGAACACTTAACGTGAC
AAATAAATGGGGGGGCTGATTGTTCGTGG back to topprotein sequence of jgi.p|Nanoce1779_2|581084 >mRNA_2656-protein ID=mRNA_2656-protein|Name=jgi.p|Nanoce1779_2|581084|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp
MSNSLFSQHTRLSEEVFARFMSLPQGDAYQAEYIWIGGSGQDLRCKTRTL
YKVTSNPDDLPIWNFDGSSTGQAPGDDSEVLLKPQAIFPDPFRGGKNILV
MCDCYKPDMTPIKNNSRVRCAEAMKKVESLVPWFGIEQEYTLFEADGVTP
FGWPKGGFPGAQGPYYCSIGTENAYGRHIAEAHYRACLYANIQISGINGE
VLPGQWEYQVGPSVGIASGDQMWVSRYILQRVCEAFGVIVSLDPKPIPGD
WNGSGCHTNFSTEPMRQPGGFTVIIDALEKLRARHAEHIAAYGEGNERRL
TGKHETASMDSFSYGVANRGASCRIPRAAEKDGCGYFEDRRPSSNMDPYV
VTGMLIETCCL* back to topmRNA from alignment at scaffold_5:860816..863193+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2656 ID=mRNA_2656|Name=jgi.p|Nanoce1779_2|581084|organism=Nannochloropsis oceanica|type=mRNA|length=2378bp|location=Sequence derived from alignment at scaffold_5:860816..863193+ (Nannochloropsis oceanica)
ACAGCAACTCGACCACCCCCTAAAAATGTCCAACTCGCTCTTCAGTCAAC
ACACCCGCTTGTCGGAGGAGGTGTTTGCCCGCTTCATGTCCCTTCCTCAG
GGGGATGCCTACCAAGCCGAGTACATCTGTAAGTCCAAGAGAAGGGAGTG
GACATCACCAGGCACGAGGCACGCAAGAATTGCCGCGGAAGGGTGTAGGG
CGCGGCACGCGCGGCGCGGCCCAGATATCTTCATCATTTTTTCAGTCTTG
TCTTATACTCTCTCCTCTACTACACAGGGATTGGTGGCTCTGGCCAAGAC
TTGCGCTGCAAGACCCGCACACTCTATAAGGTCACGAGCAACCCCGATGA
CCTGTAAGTACTGATCTTGGGAGCGAAATATCCCCCGCGGATGGATTTTT
TATGGGCCTTTGTTTGGCAAGGTGCCATTTTTGTATGCTTGTGTCAGTTG
TTTAGCTTACATCTTAGTGTCATGCATTTGCGCTGTATCTTTGCATCAGC
CGCAACATGTTGGTCTGTCGTGCGCAAGGCCTACAACCGACCTCCGTGTT
CCTCGGAGAGCAAACACATGATCTGCTCCTTTTTCGATTCGCACCCCATT
AGCCCTTTACTTGCCTTGTGCTGCTGTCCTTCATGCCCCAGACAACCACC
GTCCACACCCGTCATATTCATCCACTGCTCCCTCCTTTAACTCCCAACCC
CCTTCAATACGCTCAAAATTTTATCCGCCCACTTGTCCCGCTCACTTTTC
CTCTCTGAACCCCTCCATAGGCCCATTTGGAACTTCGATGGCTCCTCCAC
CGGCCAAGCTCCCGGGGACGACTCCGAGGTACTCCTGAAGCCCCAGGCAA
TTTTCCCCGACCCCTTCCGTGGCGGAAAGAACATCCTGGTCATGTGCGAC
TGCTACAAGCCCGACATGACCCCCATCAAGAACAACTCTCGTGTCCGGTG
CGCGGAGGCGATGAAGAAGGTTGAATCCCTCGTCCCCTGGTTCGGCATCG
AGCAAGAGTACACCCTGTTCGAGGCGGATGGCGTGACGCCCTTCGGCTGG
CCCAAGGGAGGTTTCCCCGGTGCCCAGGGTATGTCTAAAGGATCAGCGAG
GAAGAAGGGAGACAGGGAGGGAAGGTGGGAGGGGTTGTTGTGACCCTTGG
CGCCGACTATCATCGACTCATCTTTTCTCCCTTATACCACCTTTCCCTTA
TTTCCTCCTTCCCCACCAGGCCCGTACTACTGCTCCATCGGGACTGAGAA
CGCCTACGGCCGCCACATCGCCGAGGCTCACTACCGCGCCTGCCTCTATG
CCAATATTCAGATCTCCGGGATCAACGGCGAGGTGCTCCCGGGCCAGTGG
GAGTATCAGGTGGGCCCCTCCGTCGGCATTGCATCAGGTGACCAGATGTG
GGTCTCTCGTTACATCCTCCAGCGTGTCTGCGAGGCCTTTGGCGTGATCG
TATCTCTGGACCCCAAGCCCATCCCGGGTGACTGGAACGGATCGGGGTGC
CATACCAACTTCTCAACCGAGCCCATGCGACAACCCGGGGGGTTCACCGT
CATTATCGACGCCTTGGAGAAGCTCCGTGCCCGCCACGCCGAGCACATTG
CCGCCTACGGGGAGGGGAACGAGCGTCGTCTGACTGGAAAGCACGAGACG
GCCAGCATGGACTCATTTTCCTATGGCGTGGCCAACCGCGGGGCATCGTG
CCGGATCCCCCGGGCGGCGGAGAAGGATGGGGTAGGTTTTACTCAAAAAT
TGGGACTATGGAGATAAGAAGAGAGAGTATAGATATGTGGGCCTTGTTGT
ATGACTTTTATTTGTCTTCTTTATCGGATGGGTATGGCTACTTCTCTCCC
TCATTTTTGCTCTTGAGATATCAGCATCTAATCCTCCCTTCCTTCCTCCC
TCTTTCCCCGTACATCTTGACAGTGCGGCTACTTCGAGGACAGGCGTCCG
TCTTCCAACATGGACCCCTATGTCGTCACGGGCATGCTTATTGAGACGTG
CTGCTTGTAAGCTTTCTTCTCCTGTTAGGAGAGGAGGGAGGTGGATAGAG
AGGGTGTTAGAGGAGGAAAGGGGAGGACTGGAAAGAGTGTGAGCCTCGTT
TTTTAATATGGTGTGGTAGGAACAAGAGGAGAGAGTAATAAGGAAGAAGA
GGGAGCCTAAACAGCAACAGTAGATGGAAGGATATGATTGGGTCTTTCGG
CCTGCGAGTATACCTCTCCTTTCATAACCCTTCCACACGCGTACTCCGGG
GAAAGAACTGATGCGAAGATTTAAAATTTGAGACAAGAGAAATAGGGAGG
CCGAAAGAGAAAAGGTGGGTTGGCAAGAAGAAGGAACACTTAACGTGACA
AATAAATGGGGGGGCTGATTGTTCGTGG back to topCoding sequence (CDS) from alignment at scaffold_5:860816..863193+ >mRNA_2656 ID=mRNA_2656|Name=jgi.p|Nanoce1779_2|581084|organism=Nannochloropsis oceanica|type=CDS|length=5430bp|location=Sequence derived from alignment at scaffold_5:860816..863193+ (Nannochloropsis oceanica)
ATGTCCAACTCGCTCTTCAGTCAACACACCCGCTTGTCGGAGGAGGTGTT
TGCCCGCTTCATGTCCCTTCCTCAGGGGGATGCCTACCAAGCCGAGTACA
TCTGGATTGGTGGCTCTGGCCAAGACTTGCGCTGCAAGACCCGCACACTC
TATAAGGTCACGAGCAACCCCGATGACCTGCCCATTTGGAACTTCGATGG
CTCCTCCACCGGCCAAGCTCCCGGGGACGACTCCGAGGTACTCCTGAAGC
CCCAGGCAATTTTCCCCGACCCCTTCCGTGGCGGAAAGAACATCCTGGTC
ATGTGCGACTGCTACAAGCCCGACATGACCCCCATCAAGAACAACTCTCG
TGTCCGGTGCGCGGAGGCGATGAAGAAGGTTGAATCCCTCGTCCCCTGGT
TCGGCATCGAGCAAGAGTACACCCTGTTCGAGGCGGATGGCGTGACGCCC
TTCGGCTGGCCCAAGGGAGGTTTCCCCGGTGCCCAGGGCCCGTACTACTG
CTCCATCGGGACTGAGAACGCCTACGGCCGCCACATCGCCGAGGCTCACT
ACCGCGCCTGCCTCTATGCCAATATTCAGATCTCCGGGATCAACGGCGAG
GTGCTCCCGGGCCAGTGGGAGTATCAGGTGGGCCCCTCCGTCGGCATTGC
ATCAGGTGACCAGATGTGGGTCTCTCGTTACATCCTCCAGCGTGTCTGCG
AGGCCTTTGGCGTGATCGTATCTCTGGACCCCAAGCCCATCCCGGGTGAC
TGGAACGGATCGGGGTGCCATACCAACTTCTCAACCGAGCCCATGCGACA
ACCCGGGGGGTTCACCGTCATTATCGACGCCTTGGAGAAGCTCCGTGCCC
GCCACGCCGAGCACATTGCCGCCTACGGGGAGGGGAACGAGCGTCGTCTG
ACTGGAAAGCACGAGACGGCCAGCATGGACTCATTTTCCTATGGCGTGGC
CAACCGCGGGGCATCGTGCCGGATCCCCCGGGCGGCGGAGAAGGATGGGT
GCGGCTACTTCGAGGACAGGCGTCCGTCTTCCAACATGGACCCCTATGTC
GTCACGGGCATGCTTATTGAGACGTGCTGCTTGTAAATGTCCAACTCGCT
CTTCAGTCAACACACCCGCTTGTCGGAGGAGGTGTTTGCCCGCTTCATGT
CCCTTCCTCAGGGGGATGCCTACCAAGCCGAGTACATCTGGATTGGTGGC
TCTGGCCAAGACTTGCGCTGCAAGACCCGCACACTCTATAAGGTCACGAG
CAACCCCGATGACCTGCCCATTTGGAACTTCGATGGCTCCTCCACCGGCC
AAGCTCCCGGGGACGACTCCGAGGTACTCCTGAAGCCCCAGGCAATTTTC
CCCGACCCCTTCCGTGGCGGAAAGAACATCCTGGTCATGTGCGACTGCTA
CAAGCCCGACATGACCCCCATCAAGAACAACTCTCGTGTCCGGTGCGCGG
AGGCGATGAAGAAGGTTGAATCCCTCGTCCCCTGGTTCGGCATCGAGCAA
GAGTACACCCTGTTCGAGGCGGATGGCGTGACGCCCTTCGGCTGGCCCAA
GGGAGGTTTCCCCGGTGCCCAGGGCCCGTACTACTGCTCCATCGGGACTG
AGAACGCCTACGGCCGCCACATCGCCGAGGCTCACTACCGCGCCTGCCTC
TATGCCAATATTCAGATCTCCGGGATCAACGGCGAGGTGCTCCCGGGCCA
GTGGGAGTATCAGGTGGGCCCCTCCGTCGGCATTGCATCAGGTGACCAGA
TGTGGGTCTCTCGTTACATCCTCCAGCGTGTCTGCGAGGCCTTTGGCGTG
ATCGTATCTCTGGACCCCAAGCCCATCCCGGGTGACTGGAACGGATCGGG
GTGCCATACCAACTTCTCAACCGAGCCCATGCGACAACCCGGGGGGTTCA
CCGTCATTATCGACGCCTTGGAGAAGCTCCGTGCCCGCCACGCCGAGCAC
ATTGCCGCCTACGGGGAGGGGAACGAGCGTCGTCTGACTGGAAAGCACGA
GACGGCCAGCATGGACTCATTTTCCTATGGCGTGGCCAACCGCGGGGCAT
CGTGCCGGATCCCCCGGGCGGCGGAGAAGGATGGGTGCGGCTACTTCGAG
GACAGGCGTCCGTCTTCCAACATGGACCCCTATGTCGTCACGGGCATGCT
TATTGAGACGTGCTGCTTGTAAATGTCCAACTCGCTCTTCAGTCAACACA
CCCGCTTGTCGGAGGAGGTGTTTGCCCGCTTCATGTCCCTTCCTCAGGGG
GATGCCTACCAAGCCGAGTACATCTGGATTGGTGGCTCTGGCCAAGACTT
GCGCTGCAAGACCCGCACACTCTATAAGGTCACGAGCAACCCCGATGACC
TGCCCATTTGGAACTTCGATGGCTCCTCCACCGGCCAAGCTCCCGGGGAC
GACTCCGAGGTACTCCTGAAGCCCCAGGCAATTTTCCCCGACCCCTTCCG
TGGCGGAAAGAACATCCTGGTCATGTGCGACTGCTACAAGCCCGACATGA
CCCCCATCAAGAACAACTCTCGTGTCCGGTGCGCGGAGGCGATGAAGAAG
GTTGAATCCCTCGTCCCCTGGTTCGGCATCGAGCAAGAGTACACCCTGTT
CGAGGCGGATGGCGTGACGCCCTTCGGCTGGCCCAAGGGAGGTTTCCCCG
GTGCCCAGGGCCCGTACTACTGCTCCATCGGGACTGAGAACGCCTACGGC
CGCCACATCGCCGAGGCTCACTACCGCGCCTGCCTCTATGCCAATATTCA
GATCTCCGGGATCAACGGCGAGGTGCTCCCGGGCCAGTGGGAGTATCAGG
TGGGCCCCTCCGTCGGCATTGCATCAGGTGACCAGATGTGGGTCTCTCGT
TACATCCTCCAGCGTGTCTGCGAGGCCTTTGGCGTGATCGTATCTCTGGA
CCCCAAGCCCATCCCGGGTGACTGGAACGGATCGGGGTGCCATACCAACT
TCTCAACCGAGCCCATGCGACAACCCGGGGGGTTCACCGTCATTATCGAC
GCCTTGGAGAAGCTCCGTGCCCGCCACGCCGAGCACATTGCCGCCTACGG
GGAGGGGAACGAGCGTCGTCTGACTGGAAAGCACGAGACGGCCAGCATGG
ACTCATTTTCCTATGGCGTGGCCAACCGCGGGGCATCGTGCCGGATCCCC
CGGGCGGCGGAGAAGGATGGGTGCGGCTACTTCGAGGACAGGCGTCCGTC
TTCCAACATGGACCCCTATGTCGTCACGGGCATGCTTATTGAGACGTGCT
GCTTGTAAATGTCCAACTCGCTCTTCAGTCAACACACCCGCTTGTCGGAG
GAGGTGTTTGCCCGCTTCATGTCCCTTCCTCAGGGGGATGCCTACCAAGC
CGAGTACATCTGGATTGGTGGCTCTGGCCAAGACTTGCGCTGCAAGACCC
GCACACTCTATAAGGTCACGAGCAACCCCGATGACCTGCCCATTTGGAAC
TTCGATGGCTCCTCCACCGGCCAAGCTCCCGGGGACGACTCCGAGGTACT
CCTGAAGCCCCAGGCAATTTTCCCCGACCCCTTCCGTGGCGGAAAGAACA
TCCTGGTCATGTGCGACTGCTACAAGCCCGACATGACCCCCATCAAGAAC
AACTCTCGTGTCCGGTGCGCGGAGGCGATGAAGAAGGTTGAATCCCTCGT
CCCCTGGTTCGGCATCGAGCAAGAGTACACCCTGTTCGAGGCGGATGGCG
TGACGCCCTTCGGCTGGCCCAAGGGAGGTTTCCCCGGTGCCCAGGGCCCG
TACTACTGCTCCATCGGGACTGAGAACGCCTACGGCCGCCACATCGCCGA
GGCTCACTACCGCGCCTGCCTCTATGCCAATATTCAGATCTCCGGGATCA
ACGGCGAGGTGCTCCCGGGCCAGTGGGAGTATCAGGTGGGCCCCTCCGTC
GGCATTGCATCAGGTGACCAGATGTGGGTCTCTCGTTACATCCTCCAGCG
TGTCTGCGAGGCCTTTGGCGTGATCGTATCTCTGGACCCCAAGCCCATCC
CGGGTGACTGGAACGGATCGGGGTGCCATACCAACTTCTCAACCGAGCCC
ATGCGACAACCCGGGGGGTTCACCGTCATTATCGACGCCTTGGAGAAGCT
CCGTGCCCGCCACGCCGAGCACATTGCCGCCTACGGGGAGGGGAACGAGC
GTCGTCTGACTGGAAAGCACGAGACGGCCAGCATGGACTCATTTTCCTAT
GGCGTGGCCAACCGCGGGGCATCGTGCCGGATCCCCCGGGCGGCGGAGAA
GGATGGGTGCGGCTACTTCGAGGACAGGCGTCCGTCTTCCAACATGGACC
CCTATGTCGTCACGGGCATGCTTATTGAGACGTGCTGCTTGTAAATGTCC
AACTCGCTCTTCAGTCAACACACCCGCTTGTCGGAGGAGGTGTTTGCCCG
CTTCATGTCCCTTCCTCAGGGGGATGCCTACCAAGCCGAGTACATCTGGA
TTGGTGGCTCTGGCCAAGACTTGCGCTGCAAGACCCGCACACTCTATAAG
GTCACGAGCAACCCCGATGACCTGCCCATTTGGAACTTCGATGGCTCCTC
CACCGGCCAAGCTCCCGGGGACGACTCCGAGGTACTCCTGAAGCCCCAGG
CAATTTTCCCCGACCCCTTCCGTGGCGGAAAGAACATCCTGGTCATGTGC
GACTGCTACAAGCCCGACATGACCCCCATCAAGAACAACTCTCGTGTCCG
GTGCGCGGAGGCGATGAAGAAGGTTGAATCCCTCGTCCCCTGGTTCGGCA
TCGAGCAAGAGTACACCCTGTTCGAGGCGGATGGCGTGACGCCCTTCGGC
TGGCCCAAGGGAGGTTTCCCCGGTGCCCAGGGCCCGTACTACTGCTCCAT
CGGGACTGAGAACGCCTACGGCCGCCACATCGCCGAGGCTCACTACCGCG
CCTGCCTCTATGCCAATATTCAGATCTCCGGGATCAACGGCGAGGTGCTC
CCGGGCCAGTGGGAGTATCAGGTGGGCCCCTCCGTCGGCATTGCATCAGG
TGACCAGATGTGGGTCTCTCGTTACATCCTCCAGCGTGTCTGCGAGGCCT
TTGGCGTGATCGTATCTCTGGACCCCAAGCCCATCCCGGGTGACTGGAAC
GGATCGGGGTGCCATACCAACTTCTCAACCGAGCCCATGCGACAACCCGG
GGGGTTCACCGTCATTATCGACGCCTTGGAGAAGCTCCGTGCCCGCCACG
CCGAGCACATTGCCGCCTACGGGGAGGGGAACGAGCGTCGTCTGACTGGA
AAGCACGAGACGGCCAGCATGGACTCATTTTCCTATGGCGTGGCCAACCG
CGGGGCATCGTGCCGGATCCCCCGGGCGGCGGAGAAGGATGGGTGCGGCT
ACTTCGAGGACAGGCGTCCGTCTTCCAACATGGACCCCTATGTCGTCACG
GGCATGCTTATTGAGACGTGCTGCTTGTAA back to top
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