jgi.p|Nanoce1779_2|581073, mRNA_2654 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581073
Unique Name	mRNA_2654
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1796
Alignment location	scaffold_5:856715..858918 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581159
Track	FilteredModels2
ProteinId	581073

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:856715..858918 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581073	gene_2654	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581073	mRNA_2654-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2654	CDS_2654	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:856715..858918+
coding sequence from alignment at scaffold_5:856715..858918+

mRNA sequence

>mRNA_2654 ID=mRNA_2654|Name=jgi.p|Nanoce1779_2|581073|organism=Nannochloropsis oceanica|type=mRNA|length=1796bp
CAAGTCGTGTCCATTTCCCCATCTCTATCGACAAGCATCCTTGAGAAGCT
CTGGAACCCTTAATAGTCTAAATCTTATCACCACGCACATTACTCGGTGT
ATGCACGCAGATAACTCTATTGCTCTGTTGCTCTCCATTTTGGAGCTGTG
TGAGGCCCATCACATGGTTGCTTGGCGCCGAACTTGACTTTGACCATCCT
TTGACAGCCTTGGCTAGGGTCGATTTAGCCAACACAACATGAAGATGTCA
AAGGTGTTGTTCTGGAAGTCTCTCCTGTTCATACTTGTGGTAAGCGTGCC
AGAGGCGCGAGGTGCTGGTCCACCCACGAGAGCTGCTGGCCTGGCGGCGT
TGTGCTCTCCAGCTGCAACTCAGTACGCACGCCGTTTCAAGTTGTTTGCC
TCAACTCACACCGCCCTGCCCCCTCCAATCTCACACCACTTCCTCATTTT
TACAGTGATGCGGCGGCTACTGTTGGTGTGCCTTGGAGGCCTGGTGGGTA
CGACTTCCTATTTCTTGCCCTTCTCGTTTAACCAGTACGCGATCGCCCGC
GCCAGCGAGCTCGCCGTTCGCAAGGCCCAGCAACAGAGCATCACCACCAA
AGCACACGACCTTCTCAATGACCTCCCAGAGCTGAGCGACTCAAGATTGG
CGGGGTGGCGTCTGAAGAAAGGTGGAGCCAACCCCACAGCCGACGGAGAA
GCCGGCGCAGTGCAGGCAGGGCAATCAGTTACGGCAGAAGAATCAACGGT
AGTCAAAGCCGCGCGAGCTGTCGATCCATCATTACCACAGCAATACGACG
TGGTTGAGTACCCGATCCCCACGCACGCTCACGGCCTCATCGAAAACGAC
GGGCGGGTGCGAGGGGTAGGAGTGCTTCTGAGCAACAACCGTGATCGTCT
CGACGCCAATCTCCTTCCAGCCGATAAAGTGGACTTATGTCAAATCGAGC
CCTTGACACTTGATCCAGAAGGACGATATGAGGGCCAAGAGGGATTGGTG
GTCTGGCAGAAGGACGAGCTTGAACCGCGTGTATTTGCCGCCTACTCGGA
CTTAAAGAAAGTGAAGAGCAAGCAAAACGGTATGGCGGACAAGTGGCGTC
GGTGGGTGCTGGACGAGGAATTGACCCCGGGTTGTGGACCACCTCCGGGC
GCAGAGGAAGAAATCATGATGTTGTAAATTGAGTTGATGAAAAAGAGAAC
GAGAAGATCTACGTAAATGAGCTAGATGGCGTACATTTTGGGGGAGGGTT
AGAAGGAGGAGGATGGGTGACTGAAGGATAAGAGGGAGAACGGAGGAGAA
GGGAATGTCATTTTTCTACTTTTGGGGTTCGCTTTTGGACTGCTTCGGTG
TTGTGAGAGGGAGAAGAAGGGAAGGAGGGCACACTCGCACGCAGAGGCCG
CACTAAGGCCGAGCAAATAAAACCCCTTGAGCATTGTAATTTTTCTTCCT
CTCCTTTTTTAAAATCTCTTCCTTCATTTATCATGCATCAAGTCAACGAA
CGACAGGGTTTGTCTCAAGTAAGCAGCAGGAAGGGCAGCAAGCGAGGATA
TCAGCAGGCCGCAGCGCCAAACCCACTTAAGCATAACACCAGCGTGTCCC
TCGGAATGTCCTCAATTCCTAACACCGATCAAAGAAAGACAATGTCTGAA
CGTTTTTTCACTTTTCTTTTCAAACAGTAGTTTTCGTGAAACGACACAAC
TTTTTGGTGTGGGTTACATTGATGGAAGGCGGGGTGATTGTACGCGCACA
GGAAGGACAAAGACGAGCGCCAAGAAAAAGAATATGCACAGGACCA

protein sequence of jgi.p|Nanoce1779_2|581073

>mRNA_2654-protein ID=mRNA_2654-protein|Name=jgi.p|Nanoce1779_2|581073|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MKMSKVLFWKSLLFILVVSVPEARGAGPPTRAAGLAALCSPAATQYARRF
KLFASTHTALPPPISHHFLIFTVMRRLLLVCLGGLVGTTSYFLPFSFNQY
AIARASELAVRKAQQQSITTKAHDLLNDLPELSDSRLAGWRLKKGGANPT
ADGEAGAVQAGQSVTAEESTVVKAARAVDPSLPQQYDVVEYPIPTHAHGL
IENDGRVRGVGVLLSNNRDRLDANLLPADKVDLCQIEPLTLDPEGRYEGQ
EGLVVWQKDELEPRVFAAYSDLKKVKSKQNGMADKWRRWVLDEELTPGCG
PPPGAEEEIMML*

mRNA from alignment at scaffold_5:856715..858918+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2654 ID=mRNA_2654|Name=jgi.p|Nanoce1779_2|581073|organism=Nannochloropsis oceanica|type=mRNA|length=2204bp|location=Sequence derived from alignment at scaffold_5:856715..858918+ (Nannochloropsis oceanica)
CAAGTCGTGTCCATTTCCCCATCTCTATCGACAAGCATCCTTGAGAAGCT
CTGGAACCCTTAATAGTCTAAATCTTATCACCACGCACATTACTCGGTGT
ATGCACGCAGATAACTCTATTGCTCTGTTGCTCTCCATTTTGGAGCTGTG
TGAGGCCCATCACATGGTTGCTTGGCGCCGAACTTGACTTTGACCATCCT
TTGACAGCCTTGGCTAGGGTCGATTTAGCCAACACAACATGAAGATGTCA
AAGGTGTTGTTCTGGAAGTCTCTCCTGTTCATACTTGTGGTAAGCGTGCC
AGAGGCGCGAGGTGCTGGTCCACCCACGAGAGCTGCTGGCCTGGCGGCGT
TGTGCTCTCCAGCTGCAACTCAGTACGCACGCCGTTTCAAGTTGTTTGCC
TCAACTCACACCGCCCTGCCCCCTCCAATCTCACACCACTTCCTCATTTT
TACAGTGATGCGGCGGCTACTGTTGGTGTGCCTTGGAGGCCTGGTGGGTA
CGACTTCCTATTTCTTGCCCTTCTCGTTTAACCAGGTACGTGCACAGAGA
CCGAGAGACGATTGGCTAGTTGTAGCTGTTCTCAGTCGCCGCTGCTGCTT
TGTGGTGCACAGCAGCAGCGACCTTGTTCTGAAAACATTAGAGGAGTGTA
TAAAAGAGAATGGGGACACTACCTTTTGTGGTGGTGTGATTTGGGGTAGC
GCTCGAGTGTTGAGCACAGGTCGAGGGGTGAGAGGGGGATGCCAACGGTG
CCCCCTGCGCTGCAACAACCACCCTGGACATGGGCACATCAAGGCTACCC
AAACATCCGGAGTCAAAACGAGCAAATATAGCAAAAAGAGGGAAACGGAT
TCGCTTGGACAAGCCATTCTGCGTCCTTTCCACGCATCATGAACCCTCCT
CACTTCTCCCTCTCCCAACCCTCCACCCCACACGACACGACAGTACGCGA
TCGCCCGCGCCAGCGAGCTCGCCGTTCGCAAGGCCCAGCAACAGAGCATC
ACCACCAAAGCACACGACCTTCTCAATGACCTCCCAGAGCTGAGCGACTC
AAGATTGGCGGGGTGGCGTCTGAAGAAAGGTGGAGCCAACCCCACAGCCG
ACGGAGAAGCCGGCGCAGTGCAGGCAGGGCAATCAGTTACGGCAGAAGAA
TCAACGGTAGTCAAAGCCGCGCGAGCTGTCGATCCATCATTACCACAGCA
ATACGACGTGGTTGAGTACCCGATCCCCACGCACGCTCACGGCCTCATCG
AAAACGACGGGCGGGTGCGAGGGGTAGGAGTGCTTCTGAGCAACAACCGT
GATCGTCTCGACGCCAATCTCCTTCCAGCCGATAAAGTGGACTTATGTCA
AATCGAGCCCTTGACACTTGATCCAGAAGGACGATATGAGGGCCAAGAGG
GATTGGTGGTCTGGCAGAAGGACGAGCTTGAACCGCGTGTATTTGCCGCC
TACTCGGACTTAAAGAAAGTGAAGAGCAAGCAAAACGGTATGGCGGACAA
GTGGCGTCGGTGGGTGCTGGACGAGGAATTGACCCCGGGTTGTGGACCAC
CTCCGGGCGCAGAGGAAGAAATCATGATGTTGTAAATTGAGTTGATGAAA
AAGAGAACGAGAAGATCTACGTAAATGAGCTAGATGGCGTACATTTTGGG
GGAGGGTTAGAAGGAGGAGGATGGGTGACTGAAGGATAAGAGGGAGAACG
GAGGAGAAGGGAATGTCATTTTTCTACTTTTGGGGTTCGCTTTTGGACTG
CTTCGGTGTTGTGAGAGGGAGAAGAAGGGAAGGAGGGCACACTCGCACGC
AGAGGCCGCACTAAGGCCGAGCAAATAAAACCCCTTGAGCATTGTAATTT
TTCTTCCTCTCCTTTTTTAAAATCTCTTCCTTCATTTATCATGCATCAAG
TCAACGAACGACAGGGTTTGTCTCAAGTAAGCAGCAGGAAGGGCAGCAAG
CGAGGATATCAGCAGGCCGCAGCGCCAAACCCACTTAAGCATAACACCAG
CGTGTCCCTCGGAATGTCCTCAATTCCTAACACCGATCAAAGAAAGACAA
TGTCTGAACGTTTTTTCACTTTTCTTTTCAAACAGTAGTTTTCGTGAAAC
GACACAACTTTTTGGTGTGGGTTACATTGATGGAAGGCGGGGTGATTGTA
CGCGCACAGGAAGGACAAAGACGAGCGCCAAGAAAAAGAATATGCACAGG
ACCA

Coding sequence (CDS) from alignment at scaffold_5:856715..858918+

>mRNA_2654 ID=mRNA_2654|Name=jgi.p|Nanoce1779_2|581073|organism=Nannochloropsis oceanica|type=CDS|length=1878bp|location=Sequence derived from alignment at scaffold_5:856715..858918+ (Nannochloropsis oceanica)
ATGAAGATGTCAAAGGTGTTGTTCTGGAAGTCTCTCCTGTTCATACTTGT
GGTAAGCGTGCCAGAGGCGCGAGGTGCTGGTCCACCCACGAGAGCTGCTG
GCCTGGCGGCGTTGTGCTCTCCAGCTGCAACTCAGTACGCACGCCGTTTC
AAGTTGTTTGCCTCAACTCACACCGCCCTGCCCCCTCCAATCTCACACCA
CTTCCTCATTTTTACAGTGATGCGGCGGCTACTGTTGGTGTGCCTTGGAG
GCCTGGTGGGTACGACTTCCTATTTCTTGCCCTTCTCGTTTAACCAGTAC
GCGATCGCCCGCGCCAGCGAGCTCGCCGTTCGCAAGGCCCAGCAACAGAG
CATCACCACCAAAGCACACGACCTTCTCAATGACCTCCCAGAGCTGAGCG
ACTCAAGATTGGCGGGGTGGCGTCTGAAGAAAGGTGGAGCCAACCCCACA
GCCGACGGAGAAGCCGGCGCAGTGCAGGCAGGGCAATCAGTTACGGCAGA
AGAATCAACGGTAGTCAAAGCCGCGCGAGCTGTCGATCCATCATTACCAC
AGCAATACGACGTGGTTGAGTACCCGATCCCCACGCACGCTCACGGCCTC
ATCGAAAACGACGGGCGGGTGCGAGGGGTAGGAGTGCTTCTGAGCAACAA
CCGTGATCGTCTCGACGCCAATCTCCTTCCAGCCGATAAAGTGGACTTAT
GTCAAATCGAGCCCTTGACACTTGATCCAGAAGGACGATATGAGGGCCAA
GAGGGATTGGTGGTCTGGCAGAAGGACGAGCTTGAACCGCGTGTATTTGC
CGCCTACTCGGACTTAAAGAAAGTGAAGAGCAAGCAAAACGGTATGGCGG
ACAAGTGGCGTCGGTGGGTGCTGGACGAGGAATTGACCCCGGGTTGTGGA
CCACCTCCGGGCGCAGAGGAAGAAATCATGATGTTGTAAATGAAGATGTC
AAAGGTGTTGTTCTGGAAGTCTCTCCTGTTCATACTTGTGGTAAGCGTGC
CAGAGGCGCGAGGTGCTGGTCCACCCACGAGAGCTGCTGGCCTGGCGGCG
TTGTGCTCTCCAGCTGCAACTCAGTACGCACGCCGTTTCAAGTTGTTTGC
CTCAACTCACACCGCCCTGCCCCCTCCAATCTCACACCACTTCCTCATTT
TTACAGTGATGCGGCGGCTACTGTTGGTGTGCCTTGGAGGCCTGGTGGGT
ACGACTTCCTATTTCTTGCCCTTCTCGTTTAACCAGTACGCGATCGCCCG
CGCCAGCGAGCTCGCCGTTCGCAAGGCCCAGCAACAGAGCATCACCACCA
AAGCACACGACCTTCTCAATGACCTCCCAGAGCTGAGCGACTCAAGATTG
GCGGGGTGGCGTCTGAAGAAAGGTGGAGCCAACCCCACAGCCGACGGAGA
AGCCGGCGCAGTGCAGGCAGGGCAATCAGTTACGGCAGAAGAATCAACGG
TAGTCAAAGCCGCGCGAGCTGTCGATCCATCATTACCACAGCAATACGAC
GTGGTTGAGTACCCGATCCCCACGCACGCTCACGGCCTCATCGAAAACGA
CGGGCGGGTGCGAGGGGTAGGAGTGCTTCTGAGCAACAACCGTGATCGTC
TCGACGCCAATCTCCTTCCAGCCGATAAAGTGGACTTATGTCAAATCGAG
CCCTTGACACTTGATCCAGAAGGACGATATGAGGGCCAAGAGGGATTGGT
GGTCTGGCAGAAGGACGAGCTTGAACCGCGTGTATTTGCCGCCTACTCGG
ACTTAAAGAAAGTGAAGAGCAAGCAAAACGGTATGGCGGACAAGTGGCGT
CGGTGGGTGCTGGACGAGGAATTGACCCCGGGTTGTGGACCACCTCCGGG
CGCAGAGGAAGAAATCATGATGTTGTAA

Synonyms

Publications