jgi.p|Nanoce1779_2|581069, mRNA_2653 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581069
Unique Name	mRNA_2653
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1327
Alignment location	scaffold_5:854797..856645 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581155
Track	FilteredModels2
ProteinId	581069

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:854797..856645 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581069	gene_2653	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581069	mRNA_2653-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2653	CDS_2653	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:854797..856645+
coding sequence from alignment at scaffold_5:854797..856645+

mRNA sequence

>mRNA_2653 ID=mRNA_2653|Name=jgi.p|Nanoce1779_2|581069|organism=Nannochloropsis oceanica|type=mRNA|length=1327bp
GGTGAATGTATCAGTGTCCCCTGCACCGCTAGAAGCCGGTAAGGTGGTCA
ACGGCGTGCGGATCATCGAAAGTGAGGAGAACTCCACTATCACCCGCCAC
AGCAAATTGGACAAGGAGCCATTGCTGAATTCGATCTACCAGGAGGTTCC
GGGAGGGGAGTCCGTCGCAGTTTTGAGTCTTTACCGATTTATGCAGGCCA
GTAAGACAGTGCTGCTTTGTGGCTTGTACATGGGCATTGGTCCCACCCTT
ATCCTCGTCAACAAGCACATCATCAAGGATCTGGATAATGGCCGTGGTTT
CAATTACCCCATGTTTCTTTCCTCCTTGGGTCTCATTTCGTCCTCAATCG
TCGCGCATCTTGTCGTCCGTGTATTCGGATATAAGCTACACAATCAAGCA
AGAATGACACGGCAGATGTATTTATGGAATGTGGTCCCCGTGGGAATTTG
CCAGGCTGCAACGCTGACATTGGGCAACGCCGTATATATGTTCTTAACCG
TCTCGTTCATCCAGATGCTCAAGGCGTTCACGCCGGTGATGGTGTTGGCG
GTGGGGGTGCTTTTGCATGTGGAGGTATCGGAGCCGCGGATCGTTATGTC
CGTGATGGGCATCTGTCTCGGCACGGCCCTTGCCTCCTTGGGCGAAGTCA
ATTTTAACCTCCCAGGGATCTTGTTGATGATGGCCGCGGAGCTCACCGAA
GCCATCCGCTTGATATTAGTCCAACACTTTTTGCAATCCCTCAGGTTTGG
GATCGTGGAGTCGCAGTTCTACATGGCGCCTGCTGGGGCCCTCTGTCTGA
TGGGTGCCAGTGTTCTCACTGAATATAAAAGCATGCATGCCAATGGGGCG
TTTTCTCAAATTTTTGCTCATCCGGCCTTGTTCTTCCTTGCGGGAACTCT
GGGGGTGGGAGTCAATTTTTCTAGCTACTTGGTTGTGCAGCAGACGAACT
CAGTGACGTTGAAGGTGTTGGGAGCGGCGAGAAATGCAGGATTGGTGTTA
TTAAGTGTTTTATACTACGGAGAGTTGGTAAGTGGGACGCAGGCGTCTGG
CTACGCGGTTAGCTTGTGCTGTTTTGGGTTGTATTCCTACCTCAAGATGA
ATAAGAACGTGTAAATAAGATGCAGAGAGAAAGGTCTCGAATGTTCGCCT
CGTCTCTTTTGTTGTGGTGAGTTGTAGGAGGGTATGCATATATATATGAA
TGTATACTGTATATTGGTATATTGGGAGGGGAGTTACTGTAGGCTCCAGC
CTCTTCACATACATTTTAGTTCTGGGATATTTGCCAATTTACGCAATCCA
AAAGGATATTAAAAGCGCCTCTTTGTA

protein sequence of jgi.p|Nanoce1779_2|581069

>mRNA_2653-protein ID=mRNA_2653-protein|Name=jgi.p|Nanoce1779_2|581069|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MQASKTVLLCGLYMGIGPTLILVNKHIIKDLDNGRGFNYPMFLSSLGLIS
SSIVAHLVVRVFGYKLHNQARMTRQMYLWNVVPVGICQAATLTLGNAVYM
FLTVSFIQMLKAFTPVMVLAVGVLLHVEVSEPRIVMSVMGICLGTALASL
GEVNFNLPGILLMMAAELTEAIRLILVQHFLQSLRFGIVESQFYMAPAGA
LCLMGASVLTEYKSMHANGAFSQIFAHPALFFLAGTLGVGVNFSSYLVVQ
QTNSVTLKVLGAARNAGLVLLSVLYYGELVSGTQASGYAVSLCCFGLYSY
LKMNKNV*

mRNA from alignment at scaffold_5:854797..856645+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2653 ID=mRNA_2653|Name=jgi.p|Nanoce1779_2|581069|organism=Nannochloropsis oceanica|type=mRNA|length=1849bp|location=Sequence derived from alignment at scaffold_5:854797..856645+ (Nannochloropsis oceanica)
GGTGAATGTATCAGTGTCCCCTGCACCGCTAGAAGCCGGTAAGGTGGTCA
ACGGCGTGCGGATCATCGAAAGTGAGGAGAACTCCACTATCACCCGCCAC
AGCAAATTGGACAAGGAGCCATTGCTGAATTCGATCTACCAGGAGGTTCC
GGGAGGGGAGTCCGTCGCAGTTTTGAGTCTTTACCGATTTATGCAGGCCA
GTAAGACAGTGCTGCTTTGTGGCTTGTACATGGGCATTGGTATGTGACAA
GTGTAGGCTATTGGTGGATCGCGAATCTCTACATTCTGTGTTTTTTTGTC
TTCCAAATTGGATCTCGTATCGGAGTGTATCTTCCACCTGTCATTTAGTC
ATAGTGTCATCATGCATTTTCCAAGTGCCTTTCGTCTATTGCTTTTACCA
ATCAACTTAATGCTAAGCACTTATCGATGTTTCCCCAACCCTCCTTCCCT
CTCCGCATCCCCACCCACTGTATAAACAGGTCCCACCCTTATCCTCGTCA
ACAAGCACATCATCAAGGATCTGGATAATGGCCGTGGTTTCAATTACCCC
ATGTTTCTTTCCTCCTTGGGTCTCATTTCGTCCTCAATCGTCGCGCATCT
TGTCGTCCGTGTATTCGGATATAAGCTACACAATCAAGCAAGAATGACAC
GGCAGATGTATTTATGGAATGTGGTCCCCGTGGGAATTTGCCAGGCTGCA
ACGCTGACATTGGGCAACGCCGTATATATGTTCTTAACCGTCTCGTTCAT
CCAGATGCTCAAGGCGTTCACGCCGGTGATGGTGTTGGCGGTGGGGGTGC
TTTTGCATGTGGAGGTATCGGAGCCGCGGGTAGGTTTCTCGGTGAATTGA
GGGGACTGGGGAAATCAGGGCGCTTATCAACGACCAAATAATCACTTCTA
CACTTTCTTTCTATTTTTTTCTTTTTCTCTCTTCTAGATCGTTATGTCCG
TGATGGGCATCTGTCTCGGCACGGCCCTTGCCTCCTTGGGCGAAGTCAAT
TTTAACCTCCCAGGGATCTTGTTGATGATGGCCGCGGAGCTCACCGAAGC
CATCCGCTTGATATTAGTCCAACACTTTTTGCAATCCCTCAGGTTTGGGA
TCGTGGAGTCGCAGTTCTACATGGCGCCTGCTGGGGCCCTCTGTCTGATG
GGTGCCAGTGTTCTCACTGAATATAAAAGCATGCATGCCAATGGGGCGTT
TTCTCAAATTTTTGCTCATCCGGCCTTGTTCTTCCTTGCGGGAACTCTGG
GGGTGGGAGTCAATTTTTCTAGCTACTTGGTTGTGCAGCAGACGAACTCA
GTGACGTTGAAGGTGTTGGGAGCGGCGAGAAATGCAGGATTGGTGTTATT
AAGTGTTTTATACTACGGAGAGTTGGTAAGTGGGACGCAGGCGTCTGGCT
ACGCGGTTAGCTTGTGCTGTTTTGGGTTGTATTCCTACCTCAAGATGAAT
AAGAACGTGTAAATAAGATGCAGAGGTGGGTGAGAAAGAAGGAGGTGTGT
AAAATGAAAGGGAAGGGAAGGAGGGCGTCTGGCAGCGTGGGACGGACGTT
TTTTTTTTGTGCGAGACCGTATGCCGTGTTGTCCGATCGAAATCTTGTGT
AGATCACTTTTGTTCTCAAACCAAGAATTATATCAATCGAATACTGCAGA
GAAAGGTCTCGAATGTTCGCCTCGTCTCTTTTGTTGTGGTGAGTTGTAGG
AGGGTATGCATATATATATGAATGTATACTGTATATTGGTATATTGGGAG
GGGAGTTACTGTAGGCTCCAGCCTCTTCACATACATTTTAGTTCTGGGAT
ATTTGCCAATTTACGCAATCCAAAAGGATATTAAAAGCGCCTCTTTGTA

Coding sequence (CDS) from alignment at scaffold_5:854797..856645+

>mRNA_2653 ID=mRNA_2653|Name=jgi.p|Nanoce1779_2|581069|organism=Nannochloropsis oceanica|type=CDS|length=2772bp|location=Sequence derived from alignment at scaffold_5:854797..856645+ (Nannochloropsis oceanica)
ATGCAGGCCAGTAAGACAGTGCTGCTTTGTGGCTTGTACATGGGCATTGG
TCCCACCCTTATCCTCGTCAACAAGCACATCATCAAGGATCTGGATAATG
GCCGTGGTTTCAATTACCCCATGTTTCTTTCCTCCTTGGGTCTCATTTCG
TCCTCAATCGTCGCGCATCTTGTCGTCCGTGTATTCGGATATAAGCTACA
CAATCAAGCAAGAATGACACGGCAGATGTATTTATGGAATGTGGTCCCCG
TGGGAATTTGCCAGGCTGCAACGCTGACATTGGGCAACGCCGTATATATG
TTCTTAACCGTCTCGTTCATCCAGATGCTCAAGGCGTTCACGCCGGTGAT
GGTGTTGGCGGTGGGGGTGCTTTTGCATGTGGAGGTATCGGAGCCGCGGA
TCGTTATGTCCGTGATGGGCATCTGTCTCGGCACGGCCCTTGCCTCCTTG
GGCGAAGTCAATTTTAACCTCCCAGGGATCTTGTTGATGATGGCCGCGGA
GCTCACCGAAGCCATCCGCTTGATATTAGTCCAACACTTTTTGCAATCCC
TCAGGTTTGGGATCGTGGAGTCGCAGTTCTACATGGCGCCTGCTGGGGCC
CTCTGTCTGATGGGTGCCAGTGTTCTCACTGAATATAAAAGCATGCATGC
CAATGGGGCGTTTTCTCAAATTTTTGCTCATCCGGCCTTGTTCTTCCTTG
CGGGAACTCTGGGGGTGGGAGTCAATTTTTCTAGCTACTTGGTTGTGCAG
CAGACGAACTCAGTGACGTTGAAGGTGTTGGGAGCGGCGAGAAATGCAGG
ATTGGTGTTATTAAGTGTTTTATACTACGGAGAGTTGGTAAGTGGGACGC
AGGCGTCTGGCTACGCGGTTAGCTTGTGCTGTTTTGGGTTGTATTCCTAC
CTCAAGATGAATAAGAACGTGTAAATGCAGGCCAGTAAGACAGTGCTGCT
TTGTGGCTTGTACATGGGCATTGGTCCCACCCTTATCCTCGTCAACAAGC
ACATCATCAAGGATCTGGATAATGGCCGTGGTTTCAATTACCCCATGTTT
CTTTCCTCCTTGGGTCTCATTTCGTCCTCAATCGTCGCGCATCTTGTCGT
CCGTGTATTCGGATATAAGCTACACAATCAAGCAAGAATGACACGGCAGA
TGTATTTATGGAATGTGGTCCCCGTGGGAATTTGCCAGGCTGCAACGCTG
ACATTGGGCAACGCCGTATATATGTTCTTAACCGTCTCGTTCATCCAGAT
GCTCAAGGCGTTCACGCCGGTGATGGTGTTGGCGGTGGGGGTGCTTTTGC
ATGTGGAGGTATCGGAGCCGCGGATCGTTATGTCCGTGATGGGCATCTGT
CTCGGCACGGCCCTTGCCTCCTTGGGCGAAGTCAATTTTAACCTCCCAGG
GATCTTGTTGATGATGGCCGCGGAGCTCACCGAAGCCATCCGCTTGATAT
TAGTCCAACACTTTTTGCAATCCCTCAGGTTTGGGATCGTGGAGTCGCAG
TTCTACATGGCGCCTGCTGGGGCCCTCTGTCTGATGGGTGCCAGTGTTCT
CACTGAATATAAAAGCATGCATGCCAATGGGGCGTTTTCTCAAATTTTTG
CTCATCCGGCCTTGTTCTTCCTTGCGGGAACTCTGGGGGTGGGAGTCAAT
TTTTCTAGCTACTTGGTTGTGCAGCAGACGAACTCAGTGACGTTGAAGGT
GTTGGGAGCGGCGAGAAATGCAGGATTGGTGTTATTAAGTGTTTTATACT
ACGGAGAGTTGGTAAGTGGGACGCAGGCGTCTGGCTACGCGGTTAGCTTG
TGCTGTTTTGGGTTGTATTCCTACCTCAAGATGAATAAGAACGTGTAAAT
GCAGGCCAGTAAGACAGTGCTGCTTTGTGGCTTGTACATGGGCATTGGTC
CCACCCTTATCCTCGTCAACAAGCACATCATCAAGGATCTGGATAATGGC
CGTGGTTTCAATTACCCCATGTTTCTTTCCTCCTTGGGTCTCATTTCGTC
CTCAATCGTCGCGCATCTTGTCGTCCGTGTATTCGGATATAAGCTACACA
ATCAAGCAAGAATGACACGGCAGATGTATTTATGGAATGTGGTCCCCGTG
GGAATTTGCCAGGCTGCAACGCTGACATTGGGCAACGCCGTATATATGTT
CTTAACCGTCTCGTTCATCCAGATGCTCAAGGCGTTCACGCCGGTGATGG
TGTTGGCGGTGGGGGTGCTTTTGCATGTGGAGGTATCGGAGCCGCGGATC
GTTATGTCCGTGATGGGCATCTGTCTCGGCACGGCCCTTGCCTCCTTGGG
CGAAGTCAATTTTAACCTCCCAGGGATCTTGTTGATGATGGCCGCGGAGC
TCACCGAAGCCATCCGCTTGATATTAGTCCAACACTTTTTGCAATCCCTC
AGGTTTGGGATCGTGGAGTCGCAGTTCTACATGGCGCCTGCTGGGGCCCT
CTGTCTGATGGGTGCCAGTGTTCTCACTGAATATAAAAGCATGCATGCCA
ATGGGGCGTTTTCTCAAATTTTTGCTCATCCGGCCTTGTTCTTCCTTGCG
GGAACTCTGGGGGTGGGAGTCAATTTTTCTAGCTACTTGGTTGTGCAGCA
GACGAACTCAGTGACGTTGAAGGTGTTGGGAGCGGCGAGAAATGCAGGAT
TGGTGTTATTAAGTGTTTTATACTACGGAGAGTTGGTAAGTGGGACGCAG
GCGTCTGGCTACGCGGTTAGCTTGTGCTGTTTTGGGTTGTATTCCTACCT
CAAGATGAATAAGAACGTGTAA

Synonyms

Publications