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Properties
| Property Name | Value |
|---|
| TranscriptId | 628748 |
| Track | FilteredModels2 |
| ProteinId | 628662 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:852133..854216 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2652 ID=mRNA_2652|Name=jgi.p|Nanoce1779_2|628662|organism=Nannochloropsis oceanica|type=mRNA|length=1804bp
ACAGAGCCATCGCCATGGAAACCTTCAACGGAAGGCCCTGCTTTCAAACC
ATGCTGCTTCTCGCACTGGCGGCAGCGACGGCCACAAGGGCGGCGTCGAG
CGCCGTCGACACACTGGGTATTCCTCCTGCTGCGGCCTCTGTCTTCGGGA
TCGCCAAGCAGCAAGGGAAATTTACGTGCTTGACTGACAAGAACAAGGTC
ATCTCTTTCGACAAAGTCAACGACAATTTTTGCGATTGCCCGGATGGATC
CGACGAACCCGGCACCAGCGCCTGTGCCCCCGAAGGCCGTTTTTATTGCC
TTAACGAAGGCCACAAGGGTGCATCCATTCCCTCATCCAAGGTCAATGAC
GGCGTCTGCGAGTTTGCATGTTGCGACGGCTCTGACGAAGCCCCCGGTGT
ATGTCCCAATCGCTGCGTGCCTTTGGCGGCTGCCCGCAACGAAGAACGTA
TGGCCCGTCGGAAAGTGATCGAGGGGGGAATGGCGAAGAAGATGGAATAC
ATAAAAAATGGGGAGGCCAAAATGGAATCACGACTCAAGGAGTTGGCGTC
TCTGCAAGCGAAACGGATTCGGGTAGGAACACAAATCACCGAGGCAAGGA
CTCAGAAGGAGGTGGAAGAAGCCAAGGAAATGGTGGCGAGGCGCGAGGCA
GTACAGGAAGCGGCGGCCAAGTTGAGTGGGGAATTAGGGGTGGACGGGAT
GGAGAAGGAGAAGCTGGTTGAAGTGTATCGTCAGCTGAAGGGGAGGACAG
GAGAAGTATTGAAAGTAGTGCTCGAGGAAATCAAGCTCAAAGCCGAGATT
AAGGAGGAAAAGGAGGGGGAGAAAGAGGAGGAGGAGGAGGGAGAGGGGAA
GAGGGAGGACACGACAGAGGAGAGTAGGCAGAAGGAGGCGGCTTTGATGA
AAGAGAGGCTAATGAACAGAAGAGAGAAGGGGGGAAAGAAGGAAGATACT
TTCTTTAAGAAGCAGCTGGGCCCCGTGTTGGCTGATGATGAGGAGGAGGT
GGAGCACGATGAGAGCATCTTTGACGACCACTACGCTGAGGACGAGGATG
ACGAGGAGGACGAAGAGGGCGAGGACGAGGAGGACGAGGAAGAGGAGGAA
GAGACTTCTGGAAAGAAGGGAAATAAGGAGAAGGGGGAGGAGGTCCTCGA
AGAGCTTAATCCGATTTTGAAAGATATGTTGAGAGAAGCGGAGGAAGGGG
TGAATGAGCCATTGCCCTCCGCGGAGGCTGCTCGGAAGGCCTTGACCGAG
GCAGAAAAGGAGGAGTGGGAGTTGAATAAACGTGTGAAAGAGATCGAGTC
GGAGGGGGAGGAGGACTATGGGGGGGGATTTGAGTTTTATTTGCTGAGGG
GCAAGTGTTTCACTAAGATGGTGAATAAATATAAATATGAGATGTGTCCT
TATAAAGAGGCGCAGCAATTGGAGGGGAGTGCGGTGAGTGGGACGAAGCT
GGGGAAATGGGAGGGGATGGAGAGACTTAATGCTTCTTCGTCCATAAAAA
CGGCTGGAAGAGAAGACATATTGCACAAGTTTATTTTTCGGCATGGCGCG
AAGTGTTGGAATGGCCCGGAGCGGTCGTTAACGGTATTGGTGGGTTGTGG
GTTGGAAGATGAGGTAGTGAGTGTGAATGAACCGTCGATGTGTGAGTACG
AGATGGAATTTAGGACGCCCGCGGCGTGTTCCTCGGTCTTGTTGGATGAG
GAGGAAGAGGAGGAGGGAGGAGGGGAGGGATGGCATGCGGAATTGTAGGA
GAAGGAAGGAAGGAGGAATGGTGCGTGTGAGACGACTACACCCAAATATT
AGAA back to topprotein sequence of jgi.p|Nanoce1779_2|628662 >mRNA_2652-protein ID=mRNA_2652-protein|Name=jgi.p|Nanoce1779_2|628662|organism=Nannochloropsis oceanica|type=polypeptide|length=578bp
METFNGRPCFQTMLLLALAAATATRAASSAVDTLGIPPAAASVFGIAKQQ
GKFTCLTDKNKVISFDKVNDNFCDCPDGSDEPGTSACAPEGRFYCLNEGH
KGASIPSSKVNDGVCEFACCDGSDEAPGVCPNRCVPLAAARNEERMARRK
VIEGGMAKKMEYIKNGEAKMESRLKELASLQAKRIRVGTQITEARTQKEV
EEAKEMVARREAVQEAAAKLSGELGVDGMEKEKLVEVYRQLKGRTGEVLK
VVLEEIKLKAEIKEEKEGEKEEEEEGEGKREDTTEESRQKEAALMKERLM
NRREKGGKKEDTFFKKQLGPVLADDEEEVEHDESIFDDHYAEDEDDEEDE
EGEDEEDEEEEEETSGKKGNKEKGEEVLEELNPILKDMLREAEEGVNEPL
PSAEAARKALTEAEKEEWELNKRVKEIESEGEEDYGGGFEFYLLRGKCFT
KMVNKYKYEMCPYKEAQQLEGSAVSGTKLGKWEGMERLNASSSIKTAGRE
DILHKFIFRHGAKCWNGPERSLTVLVGCGLEDEVVSVNEPSMCEYEMEFR
TPAACSSVLLDEEEEEEGGGEGWHAEL* back to topmRNA from alignment at scaffold_5:852133..854216- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2652 ID=mRNA_2652|Name=jgi.p|Nanoce1779_2|628662|organism=Nannochloropsis oceanica|type=mRNA|length=2084bp|location=Sequence derived from alignment at scaffold_5:852133..854216- (Nannochloropsis oceanica)
ACAGAGCCATCGCCATGGAAACCTTCAACGGAAGGCCCTGCTTTCAAACC
ATGCTGCTTCTCGCACTGGCGGCAGCGACGGCCACAAGGGCGGCGTCGAG
CGCCGTCGACACACTGGGTATTCCTCCTGCTGCGGCCTCTGTCTTCGGGA
TCGCCAAGCAGCAAGGGAAATTTACGTGCTTGACTGACAAGAACAAGGTC
ATCTCTTTCGACAAAGTAAGTTAAATCTAGTGTCTGTGTATTGGTGGGAA
TATGCTCCTTCTCCTGGATGCCGACATGGAGGAGAAGTTTGAGAGTGGGC
GTGCCGCGGGACCCGTGTGTCAAACGTGCATGTCGTCCCTCGTGCATCGG
CATTGAATGAAAAGACATGAGCGTATGACACCTGAGTGTGCAAATGTTCC
CCTTTTCATCCTATTATAATCGCTTTGTATTCATCCTCTCACCGTGCACG
ACCCGCCCCTCCCTCTCTCTTCTCTTTCCCTACAATAATCTCAAGGTCAA
CGACAATTTTTGCGATTGCCCGGATGGATCCGACGAACCCGGCACCAGCG
CCTGTGCCCCCGAAGGCCGTTTTTATTGCCTTAACGAAGGCCACAAGGGT
GCATCCATTCCCTCATCCAAGGTCAATGACGGCGTCTGCGAGTTTGCATG
TTGCGACGGCTCTGACGAAGCCCCCGGTGTATGTCCCAATCGCTGCGTGC
CTTTGGCGGCTGCCCGCAACGAAGAACGTATGGCCCGTCGGAAAGTGATC
GAGGGGGGAATGGCGAAGAAGATGGAATACATAAAAAATGGGGAGGCCAA
AATGGAATCACGACTCAAGGAGTTGGCGTCTCTGCAAGCGAAACGGATTC
GGGTAGGAACACAAATCACCGAGGCAAGGACTCAGAAGGAGGTGGAAGAA
GCCAAGGAAATGGTGGCGAGGCGCGAGGCAGTACAGGAAGCGGCGGCCAA
GTTGAGTGGGGAATTAGGGGTGGACGGGATGGAGAAGGAGAAGCTGGTTG
AAGTGTATCGTCAGCTGAAGGGGAGGACAGGAGAAGTATTGAAAGTAGTG
CTCGAGGAAATCAAGCTCAAAGCCGAGATTAAGGAGGAAAAGGAGGGGGA
GAAAGAGGAGGAGGAGGAGGGAGAGGGGAAGAGGGAGGACACGACAGAGG
AGAGTAGGCAGAAGGAGGCGGCTTTGATGAAAGAGAGGCTAATGAACAGA
AGAGAGAAGGGGGGAAAGAAGGAAGATACTTTCTTTAAGAAGCAGCTGGG
CCCCGTGTTGGCTGATGATGAGGAGGAGGTGGAGCACGATGAGAGCATCT
TTGACGACCACTACGCTGAGGACGAGGATGACGAGGAGGACGAAGAGGGC
GAGGACGAGGAGGACGAGGAAGAGGAGGAAGAGACTTCTGGAAAGAAGGG
AAATAAGGAGAAGGGGGAGGAGGTCCTCGAAGAGCTTAATCCGATTTTGA
AAGATATGTTGAGAGAAGCGGAGGAAGGGGTGAATGAGCCATTGCCCTCC
GCGGAGGCTGCTCGGAAGGCCTTGACCGAGGCAGAAAAGGAGGAGTGGGA
GTTGAATAAACGTGTGAAAGAGATCGAGTCGGAGGGGGAGGAGGACTATG
GGGGGGGATTTGAGTTTTATTTGCTGAGGGGCAAGTGTTTCACTAAGATG
GTGAATAAATATAAATATGAGATGTGTCCTTATAAAGAGGCGCAGCAATT
GGAGGGGAGTGCGGTGAGTGGGACGAAGCTGGGGAAATGGGAGGGGATGG
AGAGACTTAATGCTTCTTCGTCCATAAAAACGGCTGGAAGAGAAGACATA
TTGCACAAGTTTATTTTTCGGCATGGCGCGAAGTGTTGGAATGGCCCGGA
GCGGTCGTTAACGGTATTGGTGGGTTGTGGGTTGGAAGATGAGGTAGTGA
GTGTGAATGAACCGTCGATGTGTGAGTACGAGATGGAATTTAGGACGCCC
GCGGCGTGTTCCTCGGTCTTGTTGGATGAGGAGGAAGAGGAGGAGGGAGG
AGGGGAGGGATGGCATGCGGAATTGTAGGAGAAGGAAGGAAGGAGGAATG
GTGCGTGTGAGACGACTACACCCAAATATTAGAA back to topCoding sequence (CDS) from alignment at scaffold_5:852133..854216- >mRNA_2652 ID=mRNA_2652|Name=jgi.p|Nanoce1779_2|628662|organism=Nannochloropsis oceanica|type=CDS|length=3468bp|location=Sequence derived from alignment at scaffold_5:852133..854216- (Nannochloropsis oceanica)
GTCAACGACAATTTTTGCGATTGCCCGGATGGATCCGACGAACCCGGCAC
CAGCGCCTGTGCCCCCGAAGGCCGTTTTTATTGCCTTAACGAAGGCCACA
AGGGTGCATCCATTCCCTCATCCAAGGTCAATGACGGCGTCTGCGAGTTT
GCATGTTGCGACGGCTCTGACGAAGCCCCCGGTGTATGTCCCAATCGCTG
CGTGCCTTTGGCGGCTGCCCGCAACGAAGAACGTATGGCCCGTCGGAAAG
TGATCGAGGGGGGAATGGCGAAGAAGATGGAATACATAAAAAATGGGGAG
GCCAAAATGGAATCACGACTCAAGGAGTTGGCGTCTCTGCAAGCGAAACG
GATTCGGGTAGGAACACAAATCACCGAGGCAAGGACTCAGAAGGAGGTGG
AAGAAGCCAAGGAAATGGTGGCGAGGCGCGAGGCAGTACAGGAAGCGGCG
GCCAAGTTGAGTGGGGAATTAGGGGTGGACGGGATGGAGAAGGAGAAGCT
GGTTGAAGTGTATCGTCAGCTGAAGGGGAGGACAGGAGAAGTATTGAAAG
TAGTGCTCGAGGAAATCAAGCTCAAAGCCGAGATTAAGGAGGAAAAGGAG
GGGGAGAAAGAGGAGGAGGAGGAGGGAGAGGGGAAGAGGGAGGACACGAC
AGAGGAGAGTAGGCAGAAGGAGGCGGCTTTGATGAAAGAGAGGCTAATGA
ACAGAAGAGAGAAGGGGGGAAAGAAGGAAGATACTTTCTTTAAGAAGCAG
CTGGGCCCCGTGTTGGCTGATGATGAGGAGGAGGTGGAGCACGATGAGAG
CATCTTTGACGACCACTACGCTGAGGACGAGGATGACGAGGAGGACGAAG
AGGGCGAGGACGAGGAGGACGAGGAAGAGGAGGAAGAGACTTCTGGAAAG
AAGGGAAATAAGGAGAAGGGGGAGGAGGTCCTCGAAGAGCTTAATCCGAT
TTTGAAAGATATGTTGAGAGAAGCGGAGGAAGGGGTGAATGAGCCATTGC
CCTCCGCGGAGGCTGCTCGGAAGGCCTTGACCGAGGCAGAAAAGGAGGAG
TGGGAGTTGAATAAACGTGTGAAAGAGATCGAGTCGGAGGGGGAGGAGGA
CTATGGGGGGGGATTTGAGTTTTATTTGCTGAGGGGCAAGTGTTTCACTA
AGATGGTGAATAAATATAAATATGAGATGTGTCCTTATAAAGAGGCGCAG
CAATTGGAGGGGAGTGCGGTGAGTGGGACGAAGCTGGGGAAATGGGAGGG
GATGGAGAGACTTAATGCTTCTTCGTCCATAAAAACGGCTGGAAGAGAAG
ACATATTGCACAAGTTTATTTTTCGGCATGGCGCGAAGTGTTGGAATGGC
CCGGAGCGGTCGTTAACGGTATTGGTGGGTTGTGGGTTGGAAGATGAGGT
AGTGAGTGTGAATGAACCGTCGATGTGTGAGTACGAGATGGAATTTAGGA
CGCCCGCGGCGTGTTCCTCGGTCTTGTTGGATGAGGAGGAAGAGGAGGAG
GGAGGAGGGGAGGGATGGCATGCGGAATTGTAGATGGAAACCTTCAACGG
AAGGCCCTGCTTTCAAACCATGCTGCTTCTCGCACTGGCGGCAGCGACGG
CCACAAGGGCGGCGTCGAGCGCCGTCGACACACTGGGTATTCCTCCTGCT
GCGGCCTCTGTCTTCGGGATCGCCAAGCAGCAAGGGAAATTTACGTGCTT
GACTGACAAGAACAAGGTCATCTCTTTCGACAAAGTCAACGACAATTTTT
GCGATTGCCCGGATGGATCCGACGAACCCGGCACCAGCGCCTGTGCCCCC
GAAGGCCGTTTTTATTGCCTTAACGAAGGCCACAAGGGTGCATCCATTCC
CTCATCCAAGGTCAATGACGGCGTCTGCGAGTTTGCATGTTGCGACGGCT
CTGACGAAGCCCCCGGTGTATGTCCCAATCGCTGCGTGCCTTTGGCGGCT
GCCCGCAACGAAGAACGTATGGCCCGTCGGAAAGTGATCGAGGGGGGAAT
GGCGAAGAAGATGGAATACATAAAAAATGGGGAGGCCAAAATGGAATCAC
GACTCAAGGAGTTGGCGTCTCTGCAAGCGAAACGGATTCGGGTAGGAACA
CAAATCACCGAGGCAAGGACTCAGAAGGAGGTGGAAGAAGCCAAGGAAAT
GGTGGCGAGGCGCGAGGCAGTACAGGAAGCGGCGGCCAAGTTGAGTGGGG
AATTAGGGGTGGACGGGATGGAGAAGGAGAAGCTGGTTGAAGTGTATCGT
CAGCTGAAGGGGAGGACAGGAGAAGTATTGAAAGTAGTGCTCGAGGAAAT
CAAGCTCAAAGCCGAGATTAAGGAGGAAAAGGAGGGGGAGAAAGAGGAGG
AGGAGGAGGGAGAGGGGAAGAGGGAGGACACGACAGAGGAGAGTAGGCAG
AAGGAGGCGGCTTTGATGAAAGAGAGGCTAATGAACAGAAGAGAGAAGGG
GGGAAAGAAGGAAGATACTTTCTTTAAGAAGCAGCTGGGCCCCGTGTTGG
CTGATGATGAGGAGGAGGTGGAGCACGATGAGAGCATCTTTGACGACCAC
TACGCTGAGGACGAGGATGACGAGGAGGACGAAGAGGGCGAGGACGAGGA
GGACGAGGAAGAGGAGGAAGAGACTTCTGGAAAGAAGGGAAATAAGGAGA
AGGGGGAGGAGGTCCTCGAAGAGCTTAATCCGATTTTGAAAGATATGTTG
AGAGAAGCGGAGGAAGGGGTGAATGAGCCATTGCCCTCCGCGGAGGCTGC
TCGGAAGGCCTTGACCGAGGCAGAAAAGGAGGAGTGGGAGTTGAATAAAC
GTGTGAAAGAGATCGAGTCGGAGGGGGAGGAGGACTATGGGGGGGGATTT
GAGTTTTATTTGCTGAGGGGCAAGTGTTTCACTAAGATGGTGAATAAATA
TAAATATGAGATGTGTCCTTATAAAGAGGCGCAGCAATTGGAGGGGAGTG
CGGTGAGTGGGACGAAGCTGGGGAAATGGGAGGGGATGGAGAGACTTAAT
GCTTCTTCGTCCATAAAAACGGCTGGAAGAGAAGACATATTGCACAAGTT
TATTTTTCGGCATGGCGCGAAGTGTTGGAATGGCCCGGAGCGGTCGTTAA
CGGTATTGGTGGGTTGTGGGTTGGAAGATGAGGTAGTGAGTGTGAATGAA
CCGTCGATGTGTGAGTACGAGATGGAATTTAGGACGCCCGCGGCGTGTTC
CTCGGTCTTGTTGGATGAGGAGGAAGAGGAGGAGGGAGGAGGGGAGGGAT
GGCATGCGGAATTGTAGATGGAAACCTTCAACGGAAGGCCCTGCTTTCAA
ACCATGCTGCTTCTCGCACTGGCGGCAGCGACGGCCACAAGGGCGGCGTC
GAGCGCCGTCGACACACTGGGTATTCCTCCTGCTGCGGCCTCTGTCTTCG
GGATCGCCAAGCAGCAAGGGAAATTTACGTGCTTGACTGACAAGAACAAG
GTCATCTCTTTCGACAAA back to top
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