jgi.p|Nanoce1779_2|581066, mRNA_2651 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581066
Unique NamemRNA_2651
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1565
Alignment locationscaffold_5:850485..852049 +

Link to JBrowse

Properties
Property NameValue
TranscriptId581152
TrackFilteredModels2
ProteinId581066
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:850485..852049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581066gene_2651Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581066mRNA_2651-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2651CDS_2651Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2651 ID=mRNA_2651|Name=jgi.p|Nanoce1779_2|581066|organism=Nannochloropsis oceanica|type=mRNA|length=1565bp
ATGACGCCAGCCGTTTGTGGGCAGCAACAACTCCCGAGATCACACCGACC
TCCCACCTACCCCCCCTTGCCTCACAACCCAACCCACTGACCCTCCCGTA
TGCATCGACTACCGCAGCATCTTGGTCTCCTTACCCCTTCCTCCTGCCTA
TGCGCCAGTCGCTCTCGCTGCTGCTTCTTCACGTGGCCTTCCTGTCGTTC
TCCGAAGCCCTCCACCACCCCCTCTCCTCGGGTCCTTCCACCACCCCTTT
GCGCCGTTCTTGCACACGCACCGCTACGGTTCCCATGGCCTCGACTCATT
CCGGCAGCAGTGACACTCATCCCAAAGTCTTGGGAATGGGGGTCACGGGC
ATTGACTTGCTAGCCTACGTCGACGCCTACCCCGCCCCTGATGCCAAAAT
CCGGACGAGCGATTTCAAGGTCCAAGGTGGCGGCAATGCAGGCAATACGC
TGACGGCTCTCAGTCGCTTGGGCGTCCATGCCGAGATTTTTACAAAAGTG
GGCGATGATGCATATGGCAAGATGATTATTGATGAGCTTGCTGCGGACGG
ATTGGATACCCGTCGGGTCATCCGCAAGGCCGGCATCTCCTCTCCCTTCA
CCTATGTCATCGTCGACACCGCCAGTCAAACCCGCACATGCTTACACACG
CCCTCCGAAGACATGACTGAAGAGGAGGTTCTTCCCTCTCTATTAGACGG
GGTGGACTTTCTCCACCTCGACGGACGCAACACCCTTGCAGCCATCAAGC
TTGCCCGGCTCTCTCGCGAACGCGGTATTCCAGTCATGCTTGACGCCGAA
AAAGACCGACCACACTTAAAGGAACTCGTCCCCCTTTGCGATTTTCTAGT
GACCAACACAGCGTTTCCCAAGACGTTTACGGGCGCGAGGAGCACAGAGG
AAGGAATGGCGGCGCTTTTGAGTTTGGGGAAAGCGAGATTAATTTTCACA
ACGCTTGGCGCGGATGGGAGCATGGTAATGGGCCGTTCGGAAGATATGCT
GCTTGGGGGGAAGAGGGATGGGGAAGATAGGATATGGCCGATGCCTTTAG
GGATGCAGGAATCGACATACACCTGTCCGTCGGAGGCAACGGACTTAGTA
GTAATTAAGTGCAAGGCATGGCCGTTGGAGCCGAAAGAGGTTGTGGATAC
CACCGGGGCAGGGGATGCGTTTATTGCTGGAATAATATATGGGTTGACTC
ACTCACTGCCGATTCCAAGAATGCTGGTCTTGGGGGGTTATGTGGCAGCG
CAGAAACTAAAGAAGCCAGGGGCGAGGGCAGGGCTGCCAAGAAGGGAATT
TGTACCAAGGGAAGTGGGCCTGGTCGGGTAACTGAGAGAATCGAGGGAGG
GGGGAAATGACATAGATTGAACGAAATATGTTGATATTTTTTGTCCGTCC
GTTATTTTAGGGAGTGATTGTTGTCGTCATAGTTGTTGTGTGTTGCCCCT
CAAGCGAGGTTGGGCTGCCAAACGAGGTGGGGCTTGAGGACTGGGGAGTG
AACCGATTAGATTTATTATCTCATAAAATCAAAAGAAATGAATGATAATG
ACATCAGGGGTGCCA
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protein sequence of jgi.p|Nanoce1779_2|581066

>mRNA_2651-protein ID=mRNA_2651-protein|Name=jgi.p|Nanoce1779_2|581066|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MRQSLSLLLLHVAFLSFSEALHHPLSSGPSTTPLRRSCTRTATVPMASTH
SGSSDTHPKVLGMGVTGIDLLAYVDAYPAPDAKIRTSDFKVQGGGNAGNT
LTALSRLGVHAEIFTKVGDDAYGKMIIDELAADGLDTRRVIRKAGISSPF
TYVIVDTASQTRTCLHTPSEDMTEEEVLPSLLDGVDFLHLDGRNTLAAIK
LARLSRERGIPVMLDAEKDRPHLKELVPLCDFLVTNTAFPKTFTGARSTE
EGMAALLSLGKARLIFTTLGADGSMVMGRSEDMLLGGKRDGEDRIWPMPL
GMQESTYTCPSEATDLVVIKCKAWPLEPKEVVDTTGAGDAFIAGIIYGLT
HSLPIPRMLVLGGYVAAQKLKKPGARAGLPRREFVPREVGLVG*
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mRNA from alignment at scaffold_5:850485..852049+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2651 ID=mRNA_2651|Name=jgi.p|Nanoce1779_2|581066|organism=Nannochloropsis oceanica|type=mRNA|length=1565bp|location=Sequence derived from alignment at scaffold_5:850485..852049+ (Nannochloropsis oceanica)
ATGACGCCAGCCGTTTGTGGGCAGCAACAACTCCCGAGATCACACCGACC
TCCCACCTACCCCCCCTTGCCTCACAACCCAACCCACTGACCCTCCCGTA
TGCATCGACTACCGCAGCATCTTGGTCTCCTTACCCCTTCCTCCTGCCTA
TGCGCCAGTCGCTCTCGCTGCTGCTTCTTCACGTGGCCTTCCTGTCGTTC
TCCGAAGCCCTCCACCACCCCCTCTCCTCGGGTCCTTCCACCACCCCTTT
GCGCCGTTCTTGCACACGCACCGCTACGGTTCCCATGGCCTCGACTCATT
CCGGCAGCAGTGACACTCATCCCAAAGTCTTGGGAATGGGGGTCACGGGC
ATTGACTTGCTAGCCTACGTCGACGCCTACCCCGCCCCTGATGCCAAAAT
CCGGACGAGCGATTTCAAGGTCCAAGGTGGCGGCAATGCAGGCAATACGC
TGACGGCTCTCAGTCGCTTGGGCGTCCATGCCGAGATTTTTACAAAAGTG
GGCGATGATGCATATGGCAAGATGATTATTGATGAGCTTGCTGCGGACGG
ATTGGATACCCGTCGGGTCATCCGCAAGGCCGGCATCTCCTCTCCCTTCA
CCTATGTCATCGTCGACACCGCCAGTCAAACCCGCACATGCTTACACACG
CCCTCCGAAGACATGACTGAAGAGGAGGTTCTTCCCTCTCTATTAGACGG
GGTGGACTTTCTCCACCTCGACGGACGCAACACCCTTGCAGCCATCAAGC
TTGCCCGGCTCTCTCGCGAACGCGGTATTCCAGTCATGCTTGACGCCGAA
AAAGACCGACCACACTTAAAGGAACTCGTCCCCCTTTGCGATTTTCTAGT
GACCAACACAGCGTTTCCCAAGACGTTTACGGGCGCGAGGAGCACAGAGG
AAGGAATGGCGGCGCTTTTGAGTTTGGGGAAAGCGAGATTAATTTTCACA
ACGCTTGGCGCGGATGGGAGCATGGTAATGGGCCGTTCGGAAGATATGCT
GCTTGGGGGGAAGAGGGATGGGGAAGATAGGATATGGCCGATGCCTTTAG
GGATGCAGGAATCGACATACACCTGTCCGTCGGAGGCAACGGACTTAGTA
GTAATTAAGTGCAAGGCATGGCCGTTGGAGCCGAAAGAGGTTGTGGATAC
CACCGGGGCAGGGGATGCGTTTATTGCTGGAATAATATATGGGTTGACTC
ACTCACTGCCGATTCCAAGAATGCTGGTCTTGGGGGGTTATGTGGCAGCG
CAGAAACTAAAGAAGCCAGGGGCGAGGGCAGGGCTGCCAAGAAGGGAATT
TGTACCAAGGGAAGTGGGCCTGGTCGGGTAACTGAGAGAATCGAGGGAGG
GGGGAAATGACATAGATTGAACGAAATATGTTGATATTTTTTGTCCGTCC
GTTATTTTAGGGAGTGATTGTTGTCGTCATAGTTGTTGTGTGTTGCCCCT
CAAGCGAGGTTGGGCTGCCAAACGAGGTGGGGCTTGAGGACTGGGGAGTG
AACCGATTAGATTTATTATCTCATAAAATCAAAAGAAATGAATGATAATG
ACATCAGGGGTGCCA
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Coding sequence (CDS) from alignment at scaffold_5:850485..852049+

>mRNA_2651 ID=mRNA_2651|Name=jgi.p|Nanoce1779_2|581066|organism=Nannochloropsis oceanica|type=CDS|length=1182bp|location=Sequence derived from alignment at scaffold_5:850485..852049+ (Nannochloropsis oceanica)
ATGCGCCAGTCGCTCTCGCTGCTGCTTCTTCACGTGGCCTTCCTGTCGTT
CTCCGAAGCCCTCCACCACCCCCTCTCCTCGGGTCCTTCCACCACCCCTT
TGCGCCGTTCTTGCACACGCACCGCTACGGTTCCCATGGCCTCGACTCAT
TCCGGCAGCAGTGACACTCATCCCAAAGTCTTGGGAATGGGGGTCACGGG
CATTGACTTGCTAGCCTACGTCGACGCCTACCCCGCCCCTGATGCCAAAA
TCCGGACGAGCGATTTCAAGGTCCAAGGTGGCGGCAATGCAGGCAATACG
CTGACGGCTCTCAGTCGCTTGGGCGTCCATGCCGAGATTTTTACAAAAGT
GGGCGATGATGCATATGGCAAGATGATTATTGATGAGCTTGCTGCGGACG
GATTGGATACCCGTCGGGTCATCCGCAAGGCCGGCATCTCCTCTCCCTTC
ACCTATGTCATCGTCGACACCGCCAGTCAAACCCGCACATGCTTACACAC
GCCCTCCGAAGACATGACTGAAGAGGAGGTTCTTCCCTCTCTATTAGACG
GGGTGGACTTTCTCCACCTCGACGGACGCAACACCCTTGCAGCCATCAAG
CTTGCCCGGCTCTCTCGCGAACGCGGTATTCCAGTCATGCTTGACGCCGA
AAAAGACCGACCACACTTAAAGGAACTCGTCCCCCTTTGCGATTTTCTAG
TGACCAACACAGCGTTTCCCAAGACGTTTACGGGCGCGAGGAGCACAGAG
GAAGGAATGGCGGCGCTTTTGAGTTTGGGGAAAGCGAGATTAATTTTCAC
AACGCTTGGCGCGGATGGGAGCATGGTAATGGGCCGTTCGGAAGATATGC
TGCTTGGGGGGAAGAGGGATGGGGAAGATAGGATATGGCCGATGCCTTTA
GGGATGCAGGAATCGACATACACCTGTCCGTCGGAGGCAACGGACTTAGT
AGTAATTAAGTGCAAGGCATGGCCGTTGGAGCCGAAAGAGGTTGTGGATA
CCACCGGGGCAGGGGATGCGTTTATTGCTGGAATAATATATGGGTTGACT
CACTCACTGCCGATTCCAAGAATGCTGGTCTTGGGGGGTTATGTGGCAGC
GCAGAAACTAAAGAAGCCAGGGGCGAGGGCAGGGCTGCCAAGAAGGGAAT
TTGTACCAAGGGAAGTGGGCCTGGTCGGGTAA
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Synonyms
Publications