jgi.p|Nanoce1779_2|669208, mRNA_2650 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|669208
Unique NamemRNA_2650
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1538
Alignment locationscaffold_5:848871..850408 -

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Properties
Property NameValue
TranscriptId669294
TrackFilteredModels2
ProteinId669208
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:848871..850408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669208gene_2650Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669208mRNA_2650-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2650CDS_2650Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2650 ID=mRNA_2650|Name=jgi.p|Nanoce1779_2|669208|organism=Nannochloropsis oceanica|type=mRNA|length=1538bp
CAGGACGATCATGGCTACTCCTGTGATCACCAGGTCGGCAGCTGCACTCG
AGGAAGGGATGCTACCCCTGCATCCACACCCACAGCGCCACTCAATAACT
CAACTGCAATGGGTCCTGCAGATGGCACACTCGGCAGAGCCCGCAGACCA
ACAGAAGGCGGCCATGGAGTTGAATATTATGATTGAAGGCACTACACTCT
TTCCCCTGGTCTCTTTTGCCCCCATGGCCCACTCCTTGTGCCGTCTTCTA
CCGAGCCAAGACCAAACAGTGGTCCACTATGCAGCTCGAGCAGTGAAAAC
GCTGCTGCTTGACGACGCATTGAGGGGACAAGCCTTGCTTGTAGGGCTAC
CCAGGGTACTCATCACTGCACTGCACACGTGGCAGGAAGAAGTGCCCTGC
TTGCGGGAAATCTTGGGCGCATTGCAGACCTTGTCATGGGACAAACACTG
TGTCAAGAGCATTGTGGCGCCGGGGACAGGGCCGGGAATAGGCCGCAGCA
GCATCAGCACCAGCGCCAGCACCAGTAGCGGCTGCGACCATAATGAGGCT
GCGATGAAAGAAAATAGTACCAGCACACCCAAACTTGATATTAGCAGCAC
CGAGGAAAGAGGCATTGCTGACACCTGTACGCCCGCGACGTCAATCACGA
CTACCTCCTGTGCGTTGCTCCCCGTCCTTGCTCTACTTCAAGCCTGCGAT
CAAGAGGTAGCAACGCTAGCCTTAGCTATCACCGCTAATCTGTGCGCCTA
TAGCGACACGCTCCTACTTGCACACCAAGATTTCATTCTTGCCGTCAATG
AGGCACTCCCTAATGTGTTACAAGCCGCGCTGAGCTGTGATCGGTTGCTG
CGATGCTATGGTGTTGCTACACTGGCCAACGCGAGTGCGAACCCGTTTTT
GGCCGGGAGGATAAAAGAGTTAGGTGGCGTGGAGGTTGTGGAAAAGATTG
AGAGGGAGTGTTTGAGGACGAATACGGTGACGTTTGGGGGGACAAGGGTG
AGTGAGTGTTGCCAGGTGGCTTTGTTGAGATTGGCGGGAAGTAGTGCGGG
TATTGACAGCTGTAGCAAGGGGGGAAAGAAGGAGGGTAGGACGTTGTTGG
GAATGAAAAATTTTAAGTTTAAGTTTGGGAATACGCCGGCGTTGGAGTTG
ACGTTGGATGGGAGCAAGAACCGGGCAAGAATTGTAGGGTGTTTGATGTT
ATGGGTGGTGGGAATTTTGTTGGTGTTGCAGCCAGTGCTTAGGCCTAATT
AATGGCGGGGGATGGAGGAAGGGGTTGGAGTGAGTGAGTGTGCAATATAA
ATTGATTGTACAGGTGTTGCGGTGGAGGGAAAATTCCATGCACACTGTGT
TTGCGGATGTATGACACCATCAAGGGACATTGTTTAACTTTCTGAGAAAT
AAGCACTCCCATTGGCAACACGGAGGATAGATAAGGGCAAAAAATAAACG
TGGAAAGAAGACATAAAGAAAGATGAACGCAAAGTACTTCCAAATGAGTA
CAGAAAAGGAAACGCAAGAAATAGCAAGGAATGTGAGA
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protein sequence of jgi.p|Nanoce1779_2|669208

>mRNA_2650-protein ID=mRNA_2650-protein|Name=jgi.p|Nanoce1779_2|669208|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MATPVITRSAAALEEGMLPLHPHPQRHSITQLQWVLQMAHSAEPADQQKA
AMELNIMIEGTTLFPLVSFAPMAHSLCRLLPSQDQTVVHYAARAVKTLLL
DDALRGQALLVGLPRVLITALHTWQEEVPCLREILGALQTLSWDKHCVKS
IVAPGTGPGIGRSSISTSASTSSGCDHNEAAMKENSTSTPKLDISSTEER
GIADTCTPATSITTTSCALLPVLALLQACDQEVATLALAITANLCAYSDT
LLLAHQDFILAVNEALPNVLQAALSCDRLLRCYGVATLANASANPFLAGR
IKELGGVEVVEKIERECLRTNTVTFGGTRVSECCQVALLRLAGSSAGIDS
CSKGGKKEGRTLLGMKNFKFKFGNTPALELTLDGSKNRARIVGCLMLWVV
GILLVLQPVLRPN*
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mRNA from alignment at scaffold_5:848871..850408-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2650 ID=mRNA_2650|Name=jgi.p|Nanoce1779_2|669208|organism=Nannochloropsis oceanica|type=mRNA|length=1538bp|location=Sequence derived from alignment at scaffold_5:848871..850408- (Nannochloropsis oceanica)
CAGGACGATCATGGCTACTCCTGTGATCACCAGGTCGGCAGCTGCACTCG
AGGAAGGGATGCTACCCCTGCATCCACACCCACAGCGCCACTCAATAACT
CAACTGCAATGGGTCCTGCAGATGGCACACTCGGCAGAGCCCGCAGACCA
ACAGAAGGCGGCCATGGAGTTGAATATTATGATTGAAGGCACTACACTCT
TTCCCCTGGTCTCTTTTGCCCCCATGGCCCACTCCTTGTGCCGTCTTCTA
CCGAGCCAAGACCAAACAGTGGTCCACTATGCAGCTCGAGCAGTGAAAAC
GCTGCTGCTTGACGACGCATTGAGGGGACAAGCCTTGCTTGTAGGGCTAC
CCAGGGTACTCATCACTGCACTGCACACGTGGCAGGAAGAAGTGCCCTGC
TTGCGGGAAATCTTGGGCGCATTGCAGACCTTGTCATGGGACAAACACTG
TGTCAAGAGCATTGTGGCGCCGGGGACAGGGCCGGGAATAGGCCGCAGCA
GCATCAGCACCAGCGCCAGCACCAGTAGCGGCTGCGACCATAATGAGGCT
GCGATGAAAGAAAATAGTACCAGCACACCCAAACTTGATATTAGCAGCAC
CGAGGAAAGAGGCATTGCTGACACCTGTACGCCCGCGACGTCAATCACGA
CTACCTCCTGTGCGTTGCTCCCCGTCCTTGCTCTACTTCAAGCCTGCGAT
CAAGAGGTAGCAACGCTAGCCTTAGCTATCACCGCTAATCTGTGCGCCTA
TAGCGACACGCTCCTACTTGCACACCAAGATTTCATTCTTGCCGTCAATG
AGGCACTCCCTAATGTGTTACAAGCCGCGCTGAGCTGTGATCGGTTGCTG
CGATGCTATGGTGTTGCTACACTGGCCAACGCGAGTGCGAACCCGTTTTT
GGCCGGGAGGATAAAAGAGTTAGGTGGCGTGGAGGTTGTGGAAAAGATTG
AGAGGGAGTGTTTGAGGACGAATACGGTGACGTTTGGGGGGACAAGGGTG
AGTGAGTGTTGCCAGGTGGCTTTGTTGAGATTGGCGGGAAGTAGTGCGGG
TATTGACAGCTGTAGCAAGGGGGGAAAGAAGGAGGGTAGGACGTTGTTGG
GAATGAAAAATTTTAAGTTTAAGTTTGGGAATACGCCGGCGTTGGAGTTG
ACGTTGGATGGGAGCAAGAACCGGGCAAGAATTGTAGGGTGTTTGATGTT
ATGGGTGGTGGGAATTTTGTTGGTGTTGCAGCCAGTGCTTAGGCCTAATT
AATGGCGGGGGATGGAGGAAGGGGTTGGAGTGAGTGAGTGTGCAATATAA
ATTGATTGTACAGGTGTTGCGGTGGAGGGAAAATTCCATGCACACTGTGT
TTGCGGATGTATGACACCATCAAGGGACATTGTTTAACTTTCTGAGAAAT
AAGCACTCCCATTGGCAACACGGAGGATAGATAAGGGCAAAAAATAAACG
TGGAAAGAAGACATAAAGAAAGATGAACGCAAAGTACTTCCAAATGAGTA
CAGAAAAGGAAACGCAAGAAATAGCAAGGAATGTGAGA
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Coding sequence (CDS) from alignment at scaffold_5:848871..850408-

>mRNA_2650 ID=mRNA_2650|Name=jgi.p|Nanoce1779_2|669208|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at scaffold_5:848871..850408- (Nannochloropsis oceanica)
ATGGCTACTCCTGTGATCACCAGGTCGGCAGCTGCACTCGAGGAAGGGAT
GCTACCCCTGCATCCACACCCACAGCGCCACTCAATAACTCAACTGCAAT
GGGTCCTGCAGATGGCACACTCGGCAGAGCCCGCAGACCAACAGAAGGCG
GCCATGGAGTTGAATATTATGATTGAAGGCACTACACTCTTTCCCCTGGT
CTCTTTTGCCCCCATGGCCCACTCCTTGTGCCGTCTTCTACCGAGCCAAG
ACCAAACAGTGGTCCACTATGCAGCTCGAGCAGTGAAAACGCTGCTGCTT
GACGACGCATTGAGGGGACAAGCCTTGCTTGTAGGGCTACCCAGGGTACT
CATCACTGCACTGCACACGTGGCAGGAAGAAGTGCCCTGCTTGCGGGAAA
TCTTGGGCGCATTGCAGACCTTGTCATGGGACAAACACTGTGTCAAGAGC
ATTGTGGCGCCGGGGACAGGGCCGGGAATAGGCCGCAGCAGCATCAGCAC
CAGCGCCAGCACCAGTAGCGGCTGCGACCATAATGAGGCTGCGATGAAAG
AAAATAGTACCAGCACACCCAAACTTGATATTAGCAGCACCGAGGAAAGA
GGCATTGCTGACACCTGTACGCCCGCGACGTCAATCACGACTACCTCCTG
TGCGTTGCTCCCCGTCCTTGCTCTACTTCAAGCCTGCGATCAAGAGGTAG
CAACGCTAGCCTTAGCTATCACCGCTAATCTGTGCGCCTATAGCGACACG
CTCCTACTTGCACACCAAGATTTCATTCTTGCCGTCAATGAGGCACTCCC
TAATGTGTTACAAGCCGCGCTGAGCTGTGATCGGTTGCTGCGATGCTATG
GTGTTGCTACACTGGCCAACGCGAGTGCGAACCCGTTTTTGGCCGGGAGG
ATAAAAGAGTTAGGTGGCGTGGAGGTTGTGGAAAAGATTGAGAGGGAGTG
TTTGAGGACGAATACGGTGACGTTTGGGGGGACAAGGGTGAGTGAGTGTT
GCCAGGTGGCTTTGTTGAGATTGGCGGGAAGTAGTGCGGGTATTGACAGC
TGTAGCAAGGGGGGAAAGAAGGAGGGTAGGACGTTGTTGGGAATGAAAAA
TTTTAAGTTTAAGTTTGGGAATACGCCGGCGTTGGAGTTGACGTTGGATG
GGAGCAAGAACCGGGCAAGAATTGTAGGGTGTTTGATGTTATGGGTGGTG
GGAATTTTGTTGGTGTTGCAGCCAGTGCTTAGGCCTAATTAA
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Synonyms
Publications