jgi.p|Nanoce1779_2|581057, mRNA_2649 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581057
Unique Name	mRNA_2649
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2012
Alignment location	scaffold_5:846227..848490 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581143
Track	FilteredModels2
ProteinId	581057

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:846227..848490 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581057	gene_2649	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581057	mRNA_2649-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2649	CDS_2649	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:846227..848490+
coding sequence from alignment at scaffold_5:846227..848490+

mRNA sequence

>mRNA_2649 ID=mRNA_2649|Name=jgi.p|Nanoce1779_2|581057|organism=Nannochloropsis oceanica|type=mRNA|length=2012bp
CAGACAGATACGCACAGCCCTCGTTATACCTCAGCCGCTAAAGTAAGTCG
GGGAGTTGATTCCACACACATCGGGACGTGCTGTCTCGCCTGCTCCTTTA
TTATCGCGAATGCAGTGTTAAACTGCCACTGACTCGGCCTCGCTCGATCC
CCATCCTCCCACGACACCCTTATACACCAACGCTCACACACAGTACTCTT
CCCCGAAAGCGACGCTGCTGCAATCGGATGATACTTGTCATTGTGGTTAA
GCATGACGACAGCTCTCCCAAGACCGTGCACCTGACCACACTCTCTCGCT
CCATTTGACCACCTCTGCTCACCACAGCCCAAGCCTCCTCCCTTATCATG
CGGCGTCACCGCAACATCTTGGTCATCGCGGCCGTGGCGATCGGTCTTGC
CTGTACAGCCTTAGCATTCGTCCCGTCCACCCTTTCCACCTCCAGCCGCT
TTGCGTCCACATCCGTGCGTCGTCCCACAAGCTCTAGAATAACCTCCCTT
CCCGCCCGCAGTACCCGCCTTGCGCTTGCGCCCGTGGACCCCGAGGCTAT
CTCCACGGCTGTCACCATTGCCGCAGCTAGCAAAGGTCCCTTGGCAGGGA
TTACCAACAATTTTACTTCTTTGTTGGTGCTGGCGATAATAGTGGCGGTG
CACGAGCTCGGGCATTTTATTGGGGCACGTTCTCAGGGAATTAAAGTCCG
TAATTTTAGCATTGGATTTGGGCCTACATTGTTGTCGTTTAAGGAGGGCC
CTGAAGAGGATGATATCGAGTACACGTTGCGAGCGATCCCGATGGGCGGG
TTTGTGTCATTTCCTCCTCACTATGAACAGGACACGGATGGGGAGCTGAT
CAGGTATGAAGACAAGGACCTGCTCCAAAACAGGCCGCCGTTGCAGCAAG
CCATCGTCATCTCCGCCGGGGTGATTGCGAACATCTTTCTCTCTTTTACC
CTGTTGCTGGGGTCAGTGGCCACGACAGGATTGCCCCGTCCTCAGTTTAG
CGAGGGACCCTACGTCATGCGCCTTGTGGAGAAAGACTGCCCGGCTGCTC
GGGCAGGCATCCAACCCGAAGACCTCATTCTGGCTGTGAATGGACAGAAG
GTCAGTGGGGACGAAAATGGACTCAATGGCGCCGTCTCCCTCATCTCGCA
AGCTGCAGGAGAGCCAGTCCAGCTCCGCCTCATGCGCAAGGGCGAGGAGA
TTACCAAGACGGTCACTCCACGGATCAACCCTGACACGGGCCGAAGCAGC
ATCGGCGTGCAAATGGCCGCTCACATCGAAAAGATAAACCTCATCAAGGC
CAAAGACCCCGCAGAAGCCCTCAAATACTCCGCGGAGGAGCTTGGGGCCA
TGCTTCGAGAAGCTTCGTCCTCCCTCCGTCGATTCTCCTCATCAGGGATG
GAAGGTCTCACAGGCCCCTTAGGCATCGTGCAAGTAGGGGCGGACCTTGC
CGCAGTGGACCAACTGGCATTGATCAAATTTGCGGCATTTATCAGCATCA
ATTTAGCGGTCGTGAACGCATTGCCTTTTCCGGGTTTGGACGGTGGGCAG
ATGATTTTTGTCTTAATCGAGGCGTTGAGAGGGAAGAGGCTCTCACCTCG
GCTGGAGAATGGTATAAACTTTGTGGCGGTCTTGTTGTTAGCATCGTTGA
GTTTGACTTTGATTGCCGGTGATATCTCACGGGGCGTCTCGAGCTTGGAA
AAGGTGATGGAGGCGAATCCGTTGATGAGCTTGCCGGGGAGGTAAATAGT
GCATAGGAGAAGGCGGCAGGGAGAGGACGGTGTACGGAGAAACCTGAGAA
AGGCGTCAAATAAACAGATATACACGCGGCAGGGATTAAGGGATAGAGGG
AGTTGTCGGTCGAAGAGGGCAGAATGTGGGGAAGGGAGGCGAGGTAGAAG
GGATTTTTCAATATTTGTTTGGCGTAGTCATGTGTGTGTGTGTGGTTATT
TGTTTTCATTGTTTACACATTTGTGAACATGCGCAGCAGTTGTTGAGGGG
AGAAGGAAGAGG

protein sequence of jgi.p|Nanoce1779_2|581057

>mRNA_2649-protein ID=mRNA_2649-protein|Name=jgi.p|Nanoce1779_2|581057|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp
MRRHRNILVIAAVAIGLACTALAFVPSTLSTSSRFASTSVRRPTSSRITS
LPARSTRLALAPVDPEAISTAVTIAAASKGPLAGITNNFTSLLVLAIIVA
VHELGHFIGARSQGIKVRNFSIGFGPTLLSFKEGPEEDDIEYTLRAIPMG
GFVSFPPHYEQDTDGELIRYEDKDLLQNRPPLQQAIVISAGVIANIFLSF
TLLLGSVATTGLPRPQFSEGPYVMRLVEKDCPAARAGIQPEDLILAVNGQ
KVSGDENGLNGAVSLISQAAGEPVQLRLMRKGEEITKTVTPRINPDTGRS
SIGVQMAAHIEKINLIKAKDPAEALKYSAEELGAMLREASSSLRRFSSSG
MEGLTGPLGIVQVGADLAAVDQLALIKFAAFISINLAVVNALPFPGLDGG
QMIFVLIEALRGKRLSPRLENGINFVAVLLLASLSLTLIAGDISRGVSSL
EKVMEANPLMSLPGR*

mRNA from alignment at scaffold_5:846227..848490+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2649 ID=mRNA_2649|Name=jgi.p|Nanoce1779_2|581057|organism=Nannochloropsis oceanica|type=mRNA|length=2264bp|location=Sequence derived from alignment at scaffold_5:846227..848490+ (Nannochloropsis oceanica)
CAGACAGATACGCACAGCCCTCGTTATACCTCAGCCGCTAAAGTAAGTCG
GGGAGTTGATTCCACACACATCGGGACGTGCTGTCTCGCCTGCTCCTTTA
TTATCGCGAATGCAGTGTTAAACTGCCACTGACTCGGCCTCGCTCGATCC
CCATCCTCCCACGACACCCTTATACACCAACGCTCACACACAGTACTCTT
CCCCGAAAGCGACGCTGCTGCAATCGGATGATACTTGTCATTGTGGTTAA
GCATGACGACAGCTCTCCCAAGACCGTGCACCTGACCACACTCTCTCGCT
CCATTTGACCACCTCTGCTCACCACAGCCCAAGCCTCCTCCCTTATCATG
CGGCGTCACCGCAACATCTTGGTCATCGCGGCCGTGGCGATCGGTCTTGC
CTGTACAGCCTTAGCATTCGTCCCGTCCACCCTTTCCACCTCCAGCCGCT
TTGCGTCCACATCCGTGCGTCGTCCCACAAGCTCTAGAATAACCTCCCTT
CCCGCCCGCAGTACCCGCCTTGCGCTTGCGCCCGTGGACCCCGAGGCTAT
CTCCACGGCTGTCACCATTGCCGCAGCTAGCAAAGGTCCCTTGGCAGGGA
TTACCAACAATTTTACTTCTTTGTTGGTGCTGGCGATAATAGTGGCGGTG
CACGAGCTCGGGCATTTTATTGGGGCACGTTCTCAGGGAATTAAAGTCCG
TAATTTTAGCATTGGATTTGGGCCTACATTGTTGTCGTTTAAGGAGGGCC
CTGAAGAGGATGATATCGAGTACACGTTGCGAGCGATCCCGATGGGCGGG
TTTGTGTCATTTCCTCCTCACTATGAACAGGACACGGATGGGGAGCTGAT
CAGGTAGGCTTTAGTGTGTATCTGTGTCCGTGTCTGTGTCTGTGAACTCG
TCTGTGTGTGTGTTCTTTTTGCTTGAAGCTCCTCCTATACTGCCTCTTTT
TGTGAGACTTTTTCTTCCATTGTCTCTATCCGATTCCTGTTTCTTTTTCC
CTCATTAGGTATGAAGACAAGGACCTGCTCCAAAACAGGCCGCCGTTGCA
GCAAGCCATCGTCATCTCCGCCGGGGTGATTGCGAACATCTTTCTCTCTT
TTACCCTGTTGCTGGGGTCAGTGGCCACGACAGGATTGCCCCGTCCTCAG
TTTAGCGAGGGACCCTACGTCATGCGCCTTGTGGAGAAAGACTGCCCGGC
TGCTCGGGCAGGCATCCAACCCGAAGACCTCATTCTGGCTGTGAATGGAC
AGAAGGTCAGTGGGGACGAAAATGGACTCAATGGCGCCGTCTCCCTCATC
TCGCAAGCTGCAGGAGAGCCAGTCCAGCTCCGCCTCATGCGCAAGGGCGA
GGAGATTACCAAGACGGTCACTCCACGGATCAACCCTGACACGGGCCGAA
GCAGCATCGGTACGTTCCCCTCGTCTCCTTTCTCAACACAGCACCAGACG
ACGGTACAATTTCACCTCTCCCTCATCGTTCCCTCCCTTATTGTCTTCCT
TCCCAGGCGTGCAAATGGCCGCTCACATCGAAAAGATAAACCTCATCAAG
GCCAAAGACCCCGCAGAAGCCCTCAAATACTCCGCGGAGGAGCTTGGGGC
CATGCTTCGAGAAGCTTCGTCCTCCCTCCGTCGATTCTCCTCATCAGGGA
TGGAAGGTCTCACAGGCCCCTTAGGCATCGTGCAAGTAGGGGCGGACCTT
GCCGCAGTGGACCAACTGGCATTGATCAAATTTGCGGCATTTATCAGCAT
CAATTTAGCGGTCGTGAACGCATTGCCTTTTCCGGGTTTGGACGGTGGGC
AGATGATTTTTGTCTTAATCGAGGCGTTGAGAGGGAAGAGGCTCTCACCT
CGGCTGGAGAATGGTATAAACTTTGTGGCGGTCTTGTTGTTAGCATCGTT
GAGTTTGACTTTGATTGCCGGTGATATCTCACGGGGCGTCTCGAGCTTGG
AAAAGGTGATGGAGGCGAATCCGTTGATGAGCTTGCCGGGGAGGTAAATA
GTGCATAGGAGAAGGCGGCAGGGAGAGGACGGTGTACGGAGAAACCTGAG
AAAGGCGTCAAATAAACAGATATACACGCGGCAGGGATTAAGGGATAGAG
GGAGTTGTCGGTCGAAGAGGGCAGAATGTGGGGAAGGGAGGCGAGGTAGA
AGGGATTTTTCAATATTTGTTTGGCGTAGTCATGTGTGTGTGTGTGGTTA
TTTGTTTTCATTGTTTACACATTTGTGAACATGCGCAGCAGTTGTTGAGG
GGAGAAGGAAGAGG

Coding sequence (CDS) from alignment at scaffold_5:846227..848490+

>mRNA_2649 ID=mRNA_2649|Name=jgi.p|Nanoce1779_2|581057|organism=Nannochloropsis oceanica|type=CDS|length=4194bp|location=Sequence derived from alignment at scaffold_5:846227..848490+ (Nannochloropsis oceanica)
ATGCGGCGTCACCGCAACATCTTGGTCATCGCGGCCGTGGCGATCGGTCT
TGCCTGTACAGCCTTAGCATTCGTCCCGTCCACCCTTTCCACCTCCAGCC
GCTTTGCGTCCACATCCGTGCGTCGTCCCACAAGCTCTAGAATAACCTCC
CTTCCCGCCCGCAGTACCCGCCTTGCGCTTGCGCCCGTGGACCCCGAGGC
TATCTCCACGGCTGTCACCATTGCCGCAGCTAGCAAAGGTCCCTTGGCAG
GGATTACCAACAATTTTACTTCTTTGTTGGTGCTGGCGATAATAGTGGCG
GTGCACGAGCTCGGGCATTTTATTGGGGCACGTTCTCAGGGAATTAAAGT
CCGTAATTTTAGCATTGGATTTGGGCCTACATTGTTGTCGTTTAAGGAGG
GCCCTGAAGAGGATGATATCGAGTACACGTTGCGAGCGATCCCGATGGGC
GGGTTTGTGTCATTTCCTCCTCACTATGAACAGGACACGGATGGGGAGCT
GATCAGGTATGAAGACAAGGACCTGCTCCAAAACAGGCCGCCGTTGCAGC
AAGCCATCGTCATCTCCGCCGGGGTGATTGCGAACATCTTTCTCTCTTTT
ACCCTGTTGCTGGGGTCAGTGGCCACGACAGGATTGCCCCGTCCTCAGTT
TAGCGAGGGACCCTACGTCATGCGCCTTGTGGAGAAAGACTGCCCGGCTG
CTCGGGCAGGCATCCAACCCGAAGACCTCATTCTGGCTGTGAATGGACAG
AAGGTCAGTGGGGACGAAAATGGACTCAATGGCGCCGTCTCCCTCATCTC
GCAAGCTGCAGGAGAGCCAGTCCAGCTCCGCCTCATGCGCAAGGGCGAGG
AGATTACCAAGACGGTCACTCCACGGATCAACCCTGACACGGGCCGAAGC
AGCATCGGCGTGCAAATGGCCGCTCACATCGAAAAGATAAACCTCATCAA
GGCCAAAGACCCCGCAGAAGCCCTCAAATACTCCGCGGAGGAGCTTGGGG
CCATGCTTCGAGAAGCTTCGTCCTCCCTCCGTCGATTCTCCTCATCAGGG
ATGGAAGGTCTCACAGGCCCCTTAGGCATCGTGCAAGTAGGGGCGGACCT
TGCCGCAGTGGACCAACTGGCATTGATCAAATTTGCGGCATTTATCAGCA
TCAATTTAGCGGTCGTGAACGCATTGCCTTTTCCGGGTTTGGACGGTGGG
CAGATGATTTTTGTCTTAATCGAGGCGTTGAGAGGGAAGAGGCTCTCACC
TCGGCTGGAGAATGGTATAAACTTTGTGGCGGTCTTGTTGTTAGCATCGT
TGAGTTTGACTTTGATTGCCGGTGATATCTCACGGGGCGTCTCGAGCTTG
GAAAAGGTGATGGAGGCGAATCCGTTGATGAGCTTGCCGGGGAGGTAAAT
GCGGCGTCACCGCAACATCTTGGTCATCGCGGCCGTGGCGATCGGTCTTG
CCTGTACAGCCTTAGCATTCGTCCCGTCCACCCTTTCCACCTCCAGCCGC
TTTGCGTCCACATCCGTGCGTCGTCCCACAAGCTCTAGAATAACCTCCCT
TCCCGCCCGCAGTACCCGCCTTGCGCTTGCGCCCGTGGACCCCGAGGCTA
TCTCCACGGCTGTCACCATTGCCGCAGCTAGCAAAGGTCCCTTGGCAGGG
ATTACCAACAATTTTACTTCTTTGTTGGTGCTGGCGATAATAGTGGCGGT
GCACGAGCTCGGGCATTTTATTGGGGCACGTTCTCAGGGAATTAAAGTCC
GTAATTTTAGCATTGGATTTGGGCCTACATTGTTGTCGTTTAAGGAGGGC
CCTGAAGAGGATGATATCGAGTACACGTTGCGAGCGATCCCGATGGGCGG
GTTTGTGTCATTTCCTCCTCACTATGAACAGGACACGGATGGGGAGCTGA
TCAGGTATGAAGACAAGGACCTGCTCCAAAACAGGCCGCCGTTGCAGCAA
GCCATCGTCATCTCCGCCGGGGTGATTGCGAACATCTTTCTCTCTTTTAC
CCTGTTGCTGGGGTCAGTGGCCACGACAGGATTGCCCCGTCCTCAGTTTA
GCGAGGGACCCTACGTCATGCGCCTTGTGGAGAAAGACTGCCCGGCTGCT
CGGGCAGGCATCCAACCCGAAGACCTCATTCTGGCTGTGAATGGACAGAA
GGTCAGTGGGGACGAAAATGGACTCAATGGCGCCGTCTCCCTCATCTCGC
AAGCTGCAGGAGAGCCAGTCCAGCTCCGCCTCATGCGCAAGGGCGAGGAG
ATTACCAAGACGGTCACTCCACGGATCAACCCTGACACGGGCCGAAGCAG
CATCGGCGTGCAAATGGCCGCTCACATCGAAAAGATAAACCTCATCAAGG
CCAAAGACCCCGCAGAAGCCCTCAAATACTCCGCGGAGGAGCTTGGGGCC
ATGCTTCGAGAAGCTTCGTCCTCCCTCCGTCGATTCTCCTCATCAGGGAT
GGAAGGTCTCACAGGCCCCTTAGGCATCGTGCAAGTAGGGGCGGACCTTG
CCGCAGTGGACCAACTGGCATTGATCAAATTTGCGGCATTTATCAGCATC
AATTTAGCGGTCGTGAACGCATTGCCTTTTCCGGGTTTGGACGGTGGGCA
GATGATTTTTGTCTTAATCGAGGCGTTGAGAGGGAAGAGGCTCTCACCTC
GGCTGGAGAATGGTATAAACTTTGTGGCGGTCTTGTTGTTAGCATCGTTG
AGTTTGACTTTGATTGCCGGTGATATCTCACGGGGCGTCTCGAGCTTGGA
AAAGGTGATGGAGGCGAATCCGTTGATGAGCTTGCCGGGGAGGTAAATGC
GGCGTCACCGCAACATCTTGGTCATCGCGGCCGTGGCGATCGGTCTTGCC
TGTACAGCCTTAGCATTCGTCCCGTCCACCCTTTCCACCTCCAGCCGCTT
TGCGTCCACATCCGTGCGTCGTCCCACAAGCTCTAGAATAACCTCCCTTC
CCGCCCGCAGTACCCGCCTTGCGCTTGCGCCCGTGGACCCCGAGGCTATC
TCCACGGCTGTCACCATTGCCGCAGCTAGCAAAGGTCCCTTGGCAGGGAT
TACCAACAATTTTACTTCTTTGTTGGTGCTGGCGATAATAGTGGCGGTGC
ACGAGCTCGGGCATTTTATTGGGGCACGTTCTCAGGGAATTAAAGTCCGT
AATTTTAGCATTGGATTTGGGCCTACATTGTTGTCGTTTAAGGAGGGCCC
TGAAGAGGATGATATCGAGTACACGTTGCGAGCGATCCCGATGGGCGGGT
TTGTGTCATTTCCTCCTCACTATGAACAGGACACGGATGGGGAGCTGATC
AGGTATGAAGACAAGGACCTGCTCCAAAACAGGCCGCCGTTGCAGCAAGC
CATCGTCATCTCCGCCGGGGTGATTGCGAACATCTTTCTCTCTTTTACCC
TGTTGCTGGGGTCAGTGGCCACGACAGGATTGCCCCGTCCTCAGTTTAGC
GAGGGACCCTACGTCATGCGCCTTGTGGAGAAAGACTGCCCGGCTGCTCG
GGCAGGCATCCAACCCGAAGACCTCATTCTGGCTGTGAATGGACAGAAGG
TCAGTGGGGACGAAAATGGACTCAATGGCGCCGTCTCCCTCATCTCGCAA
GCTGCAGGAGAGCCAGTCCAGCTCCGCCTCATGCGCAAGGGCGAGGAGAT
TACCAAGACGGTCACTCCACGGATCAACCCTGACACGGGCCGAAGCAGCA
TCGGCGTGCAAATGGCCGCTCACATCGAAAAGATAAACCTCATCAAGGCC
AAAGACCCCGCAGAAGCCCTCAAATACTCCGCGGAGGAGCTTGGGGCCAT
GCTTCGAGAAGCTTCGTCCTCCCTCCGTCGATTCTCCTCATCAGGGATGG
AAGGTCTCACAGGCCCCTTAGGCATCGTGCAAGTAGGGGCGGACCTTGCC
GCAGTGGACCAACTGGCATTGATCAAATTTGCGGCATTTATCAGCATCAA
TTTAGCGGTCGTGAACGCATTGCCTTTTCCGGGTTTGGACGGTGGGCAGA
TGATTTTTGTCTTAATCGAGGCGTTGAGAGGGAAGAGGCTCTCACCTCGG
CTGGAGAATGGTATAAACTTTGTGGCGGTCTTGTTGTTAGCATCGTTGAG
TTTGACTTTGATTGCCGGTGATATCTCACGGGGCGTCTCGAGCTTGGAAA
AGGTGATGGAGGCGAATCCGTTGATGAGCTTGCCGGGGAGGTAA

Synonyms

Publications