jgi.p|Nanoce1779_2|525117, mRNA_2647 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|525117
Unique NamemRNA_2647
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length963
Alignment locationscaffold_5:842012..842974 +

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Properties
Property NameValue
TranscriptId525203
TrackFilteredModels2
ProteinId525117
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:842012..842974 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525117gene_2647Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525117mRNA_2647-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2647CDS_2647Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2647 ID=mRNA_2647|Name=jgi.p|Nanoce1779_2|525117|organism=Nannochloropsis oceanica|type=mRNA|length=963bp
ATGACCCGCATTAAATCGCGCAAAGGCTCATGGGGTACGCGCGTTGCGAG
CACGCTGGCCTTGCTGGGATTGACTGCCGTCATTACCTATGTTGGACAAC
GGAAAGGGCTCGAGCTTATCGTCATTGGCGCGCAAGCAGGGGCATATAAC
GAAGTTGCCAAGCTCTTGGACAAAGGGCTTGACCTCCCCTCTAGCCTAGC
ATCACGCTGGCTCTGGTTCATCCTCGCCTTCAACACGGGCCATTCCTGGG
CGTATGGTGACACACTCATGCCTTCTTTGCTGCCTTCATGGTTGCATTGG
TACTGGCCAGGGCGCCGATTGGTCCAATATTTGGCTTACGTCTGCTTGCT
CGGAGGAGCAATCACACTTAAAGGACCGGGGGAGCAACTGCAGCGACAGG
TTGCGCATCTCGCAGGGCTGCATTTTACGTTGTTTTTGACTGTAGGGCTC
GGGTCGGGGTATATTGCTATATTGAAGCAGTGGGGGGTGAGGCCTTTTTT
GCTTTCGGTTCTGCTGGTAGTGGTGAATGACATTGGTGCGTATTTAGTAG
GGGTGCCCTTGGGCAAGACACCCTTGACGAAATTGTCGCCCAAGAAAAGC
TGGGAAGGTTTTTGGGGGGCGGCGGGATTGACTGTGTTGAGTGCTCCGTT
GATTGTACGGTTGCTAAAGGCGGTGTTGGGATCAATACCAGAGGATTCCA
AACGGGCGATGGGGGGATGGTTGAGTTTGAGTGACTGGCAGGCGTTGGTG
CTTGCAACGTTTGCGTCCTTTGGAGCCCCCTTGGGCGGAATCCTGGCGAG
TGCGGCGAAGAGGGCGACGGGAACGAAGGATTTCGGGGATAGCATCCCAG
GGCACGGGGGCGTGATGGATCGGGTGGACTGCCAGTTATTTATGTCGGCG
TTTTCATATTTGTTTTTGAGCTGTGGAGGTAATGGTGGTGGTGGTGGTGG
TGGTGGGAGGTAG
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protein sequence of jgi.p|Nanoce1779_2|525117

>mRNA_2647-protein ID=mRNA_2647-protein|Name=jgi.p|Nanoce1779_2|525117|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MTRIKSRKGSWGTRVASTLALLGLTAVITYVGQRKGLELIVIGAQAGAYN
EVAKLLDKGLDLPSSLASRWLWFILAFNTGHSWAYGDTLMPSLLPSWLHW
YWPGRRLVQYLAYVCLLGGAITLKGPGEQLQRQVAHLAGLHFTLFLTVGL
GSGYIAILKQWGVRPFLLSVLLVVVNDIGAYLVGVPLGKTPLTKLSPKKS
WEGFWGAAGLTVLSAPLIVRLLKAVLGSIPEDSKRAMGGWLSLSDWQALV
LATFASFGAPLGGILASAAKRATGTKDFGDSIPGHGGVMDRVDCQLFMSA
FSYLFLSCGGNGGGGGGGGR*
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mRNA from alignment at scaffold_5:842012..842974+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2647 ID=mRNA_2647|Name=jgi.p|Nanoce1779_2|525117|organism=Nannochloropsis oceanica|type=mRNA|length=963bp|location=Sequence derived from alignment at scaffold_5:842012..842974+ (Nannochloropsis oceanica)
ATGACCCGCATTAAATCGCGCAAAGGCTCATGGGGTACGCGCGTTGCGAG
CACGCTGGCCTTGCTGGGATTGACTGCCGTCATTACCTATGTTGGACAAC
GGAAAGGGCTCGAGCTTATCGTCATTGGCGCGCAAGCAGGGGCATATAAC
GAAGTTGCCAAGCTCTTGGACAAAGGGCTTGACCTCCCCTCTAGCCTAGC
ATCACGCTGGCTCTGGTTCATCCTCGCCTTCAACACGGGCCATTCCTGGG
CGTATGGTGACACACTCATGCCTTCTTTGCTGCCTTCATGGTTGCATTGG
TACTGGCCAGGGCGCCGATTGGTCCAATATTTGGCTTACGTCTGCTTGCT
CGGAGGAGCAATCACACTTAAAGGACCGGGGGAGCAACTGCAGCGACAGG
TTGCGCATCTCGCAGGGCTGCATTTTACGTTGTTTTTGACTGTAGGGCTC
GGGTCGGGGTATATTGCTATATTGAAGCAGTGGGGGGTGAGGCCTTTTTT
GCTTTCGGTTCTGCTGGTAGTGGTGAATGACATTGGTGCGTATTTAGTAG
GGGTGCCCTTGGGCAAGACACCCTTGACGAAATTGTCGCCCAAGAAAAGC
TGGGAAGGTTTTTGGGGGGCGGCGGGATTGACTGTGTTGAGTGCTCCGTT
GATTGTACGGTTGCTAAAGGCGGTGTTGGGATCAATACCAGAGGATTCCA
AACGGGCGATGGGGGGATGGTTGAGTTTGAGTGACTGGCAGGCGTTGGTG
CTTGCAACGTTTGCGTCCTTTGGAGCCCCCTTGGGCGGAATCCTGGCGAG
TGCGGCGAAGAGGGCGACGGGAACGAAGGATTTCGGGGATAGCATCCCAG
GGCACGGGGGCGTGATGGATCGGGTGGACTGCCAGTTATTTATGTCGGCG
TTTTCATATTTGTTTTTGAGCTGTGGAGGTAATGGTGGTGGTGGTGGTGG
TGGTGGGAGGTAG
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Coding sequence (CDS) from alignment at scaffold_5:842012..842974+

>mRNA_2647 ID=mRNA_2647|Name=jgi.p|Nanoce1779_2|525117|organism=Nannochloropsis oceanica|type=CDS|length=963bp|location=Sequence derived from alignment at scaffold_5:842012..842974+ (Nannochloropsis oceanica)
ATGACCCGCATTAAATCGCGCAAAGGCTCATGGGGTACGCGCGTTGCGAG
CACGCTGGCCTTGCTGGGATTGACTGCCGTCATTACCTATGTTGGACAAC
GGAAAGGGCTCGAGCTTATCGTCATTGGCGCGCAAGCAGGGGCATATAAC
GAAGTTGCCAAGCTCTTGGACAAAGGGCTTGACCTCCCCTCTAGCCTAGC
ATCACGCTGGCTCTGGTTCATCCTCGCCTTCAACACGGGCCATTCCTGGG
CGTATGGTGACACACTCATGCCTTCTTTGCTGCCTTCATGGTTGCATTGG
TACTGGCCAGGGCGCCGATTGGTCCAATATTTGGCTTACGTCTGCTTGCT
CGGAGGAGCAATCACACTTAAAGGACCGGGGGAGCAACTGCAGCGACAGG
TTGCGCATCTCGCAGGGCTGCATTTTACGTTGTTTTTGACTGTAGGGCTC
GGGTCGGGGTATATTGCTATATTGAAGCAGTGGGGGGTGAGGCCTTTTTT
GCTTTCGGTTCTGCTGGTAGTGGTGAATGACATTGGTGCGTATTTAGTAG
GGGTGCCCTTGGGCAAGACACCCTTGACGAAATTGTCGCCCAAGAAAAGC
TGGGAAGGTTTTTGGGGGGCGGCGGGATTGACTGTGTTGAGTGCTCCGTT
GATTGTACGGTTGCTAAAGGCGGTGTTGGGATCAATACCAGAGGATTCCA
AACGGGCGATGGGGGGATGGTTGAGTTTGAGTGACTGGCAGGCGTTGGTG
CTTGCAACGTTTGCGTCCTTTGGAGCCCCCTTGGGCGGAATCCTGGCGAG
TGCGGCGAAGAGGGCGACGGGAACGAAGGATTTCGGGGATAGCATCCCAG
GGCACGGGGGCGTGATGGATCGGGTGGACTGCCAGTTATTTATGTCGGCG
TTTTCATATTTGTTTTTGAGCTGTGGAGGTAATGGTGGTGGTGGTGGTGG
TGGTGGGAGGTAG
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Synonyms
Publications