jgi.p|Nanoce1779_2|581041, mRNA_2646 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581041
Unique NamemRNA_2646
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length860
Alignment locationscaffold_5:840716..841575 -

Link to JBrowse

Properties
Property NameValue
TranscriptId581127
TrackFilteredModels2
ProteinId581041
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:840716..841575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581041gene_2646Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581041mRNA_2646-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2646CDS_2646Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2646 ID=mRNA_2646|Name=jgi.p|Nanoce1779_2|581041|organism=Nannochloropsis oceanica|type=mRNA|length=860bp
ACAGGGCATGTGGGGCGTCAGGAAGGCTTTCTTTATCTCCTCCATATCCG
CTGCTTCTGTTGCTGTTACTGCTCTTGCTTGTCGCATTCACACCACGACA
ACCTCCCCCCGCTTTTGCTTCACCGCCCCCCCTCCAAGCTTCTCCTTGCC
GCACTTGTGTGACTTAAGGACCACAAGGACGACGGCATTACGTCTCGGTT
TTGACTTCACTGCCGCTGCTCAACCCTATTCCTCCTCCTTTCTCTCCCGC
TCCGGTTCGACCATCGCCACGAAGAGACACATGGCGGCAAGCAGCAGCAC
CACCATCTCTCCGGCCACCGTGAAGACCAAGGTCCTCACTCTTCTCTTCG
TACGGCGCGCAAATCCCACTTCAGGGGTCAAGGAAGTCTTGCTAGGTATG
AAAAAACGAGGATTTGGGATTGGGAAATGGAATGGCTTCGGTGGGAAAGT
CGAGCCTGGGGAGACAATCGAAGCCGCCGCCTTGCGAGAGCTCGAGGAAG
AGTCGTGCGTCAAGGCCAGCGGGGTGGAGCTACGAGGGAAGATAACGTTT
ACATTTCTGACGATTCCCGAGGTGCTGAAAGTGAGTGTATTCGAGGCGGT
GGGGCCAATGACGGGGGAGCCGCAAGAGACGGAGGAGATGAAGCCACAGT
GGTATGCAGAGAGTGACATTCCGTTTGAGAAAATGTGGGCAGACGACAAG
TATTGGGTACCATTATTTTTGGAAGGAAAGCGATTTAGGGCTTTGTTTGA
GTTTGATGACGAGAGTACAATCGTGAGGTATGATTTGGATACGTTGAAGG
AGGGTGAAGAGTTGTGAGGGAGGGAGGGGGGAAGGACGGGTAGGGCCATG
AAGGCAGACA
back to top

protein sequence of jgi.p|Nanoce1779_2|581041

>mRNA_2646-protein ID=mRNA_2646-protein|Name=jgi.p|Nanoce1779_2|581041|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MWGVRKAFFISSISAASVAVTALACRIHTTTTSPRFCFTAPPPSFSLPHL
CDLRTTRTTALRLGFDFTAAAQPYSSSFLSRSGSTIATKRHMAASSSTTI
SPATVKTKVLTLLFVRRANPTSGVKEVLLGMKKRGFGIGKWNGFGGKVEP
GETIEAAALRELEEESCVKASGVELRGKITFTFLTIPEVLKVSVFEAVGP
MTGEPQETEEMKPQWYAESDIPFEKMWADDKYWVPLFLEGKRFRALFEFD
DESTIVRYDLDTLKEGEEL*
back to top

mRNA from alignment at scaffold_5:840716..841575-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2646 ID=mRNA_2646|Name=jgi.p|Nanoce1779_2|581041|organism=Nannochloropsis oceanica|type=mRNA|length=860bp|location=Sequence derived from alignment at scaffold_5:840716..841575- (Nannochloropsis oceanica)
ACAGGGCATGTGGGGCGTCAGGAAGGCTTTCTTTATCTCCTCCATATCCG
CTGCTTCTGTTGCTGTTACTGCTCTTGCTTGTCGCATTCACACCACGACA
ACCTCCCCCCGCTTTTGCTTCACCGCCCCCCCTCCAAGCTTCTCCTTGCC
GCACTTGTGTGACTTAAGGACCACAAGGACGACGGCATTACGTCTCGGTT
TTGACTTCACTGCCGCTGCTCAACCCTATTCCTCCTCCTTTCTCTCCCGC
TCCGGTTCGACCATCGCCACGAAGAGACACATGGCGGCAAGCAGCAGCAC
CACCATCTCTCCGGCCACCGTGAAGACCAAGGTCCTCACTCTTCTCTTCG
TACGGCGCGCAAATCCCACTTCAGGGGTCAAGGAAGTCTTGCTAGGTATG
AAAAAACGAGGATTTGGGATTGGGAAATGGAATGGCTTCGGTGGGAAAGT
CGAGCCTGGGGAGACAATCGAAGCCGCCGCCTTGCGAGAGCTCGAGGAAG
AGTCGTGCGTCAAGGCCAGCGGGGTGGAGCTACGAGGGAAGATAACGTTT
ACATTTCTGACGATTCCCGAGGTGCTGAAAGTGAGTGTATTCGAGGCGGT
GGGGCCAATGACGGGGGAGCCGCAAGAGACGGAGGAGATGAAGCCACAGT
GGTATGCAGAGAGTGACATTCCGTTTGAGAAAATGTGGGCAGACGACAAG
TATTGGGTACCATTATTTTTGGAAGGAAAGCGATTTAGGGCTTTGTTTGA
GTTTGATGACGAGAGTACAATCGTGAGGTATGATTTGGATACGTTGAAGG
AGGGTGAAGAGTTGTGAGGGAGGGAGGGGGGAAGGACGGGTAGGGCCATG
AAGGCAGACA
back to top

Coding sequence (CDS) from alignment at scaffold_5:840716..841575-

>mRNA_2646 ID=mRNA_2646|Name=jgi.p|Nanoce1779_2|581041|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at scaffold_5:840716..841575- (Nannochloropsis oceanica)
ATGTGGGGCGTCAGGAAGGCTTTCTTTATCTCCTCCATATCCGCTGCTTC
TGTTGCTGTTACTGCTCTTGCTTGTCGCATTCACACCACGACAACCTCCC
CCCGCTTTTGCTTCACCGCCCCCCCTCCAAGCTTCTCCTTGCCGCACTTG
TGTGACTTAAGGACCACAAGGACGACGGCATTACGTCTCGGTTTTGACTT
CACTGCCGCTGCTCAACCCTATTCCTCCTCCTTTCTCTCCCGCTCCGGTT
CGACCATCGCCACGAAGAGACACATGGCGGCAAGCAGCAGCACCACCATC
TCTCCGGCCACCGTGAAGACCAAGGTCCTCACTCTTCTCTTCGTACGGCG
CGCAAATCCCACTTCAGGGGTCAAGGAAGTCTTGCTAGGTATGAAAAAAC
GAGGATTTGGGATTGGGAAATGGAATGGCTTCGGTGGGAAAGTCGAGCCT
GGGGAGACAATCGAAGCCGCCGCCTTGCGAGAGCTCGAGGAAGAGTCGTG
CGTCAAGGCCAGCGGGGTGGAGCTACGAGGGAAGATAACGTTTACATTTC
TGACGATTCCCGAGGTGCTGAAAGTGAGTGTATTCGAGGCGGTGGGGCCA
ATGACGGGGGAGCCGCAAGAGACGGAGGAGATGAAGCCACAGTGGTATGC
AGAGAGTGACATTCCGTTTGAGAAAATGTGGGCAGACGACAAGTATTGGG
TACCATTATTTTTGGAAGGAAAGCGATTTAGGGCTTTGTTTGAGTTTGAT
GACGAGAGTACAATCGTGAGGTATGATTTGGATACGTTGAAGGAGGGTGA
AGAGTTGTGA
back to top
Synonyms
Publications